Name: Sphaerimonospora thailandensis NN276
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140880

Type strain:

Species: Sphaerimonospora thailandensis

Strain Designation: NN276

Culture col. no.: BCC 41490, NBRC 107569, DSM 111644, NRRL B-24806

NCBI tax ID(s): 795644 (species)

SI-ID 404468

DSM 111644

Section

Sphaerimonospora thailandensis NN276 is a spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Sphaerimonospora*
	Species	**Sphaerimonospora thailandensis**
	Full Scientific Name (LPSN)	Sphaerimonospora thailandensis (Duangmal et al. 2014) Mingma et al. 2016

Synonym

Microbispora thailandensis

Information on morphological and physiological properties Morphology

[Ref.: #43691]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43691]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67621]

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

[Ref.: #67621]

Culture medium growth

[Ref.: #67621]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67621]

Culture medium composition

expand / minimize

[Ref.: #67621]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #67621]

Culture medium growth

[Ref.: #67621]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67621]

Culture medium composition

expand / minimize

[Ref.: #67621]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #67621]

Culture medium growth

[Ref.: #67621]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67621]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43691]	growth	16-40 °C
[Ref.: #43691]	optimum	26-38 °C
[Ref.: #67621]	growth	28 °C

[Ref.: #43691]	Temperature range	mesophilic
[Ref.: #67621]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43691]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43691]	Spore description	Globose or spherical singel spores
[Ref.: #43691]	Type of spore	spore
[Ref.: #43691]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43691]		NaCl		maximum	3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43691]	(-)-D-fructose ChEBI	+	builds acid from
[Ref.: #43691]	(-)-D-fructose ChEBI	+	degradation
[Ref.: #43691]	(-)-D-rhamnose	-	degradation
[Ref.: #43691]	adenine ChEBI	-	hydrolysis
[Ref.: #43691]	beta-lactose ChEBI	+	builds acid from
[Ref.: #43691]	beta-lactose ChEBI	+	degradation
[Ref.: #43691]	casein	+	hydrolysis
[Ref.: #43691]	cellobiose ChEBI	+	builds acid from
[Ref.: #43691]	cellobiose ChEBI	+	degradation
[Ref.: #43691]	cellulose ChEBI	-	hydrolysis
[Ref.: #43691]	D-galactose ChEBI	+	degradation
[Ref.: #43691]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43691]	D-mannitol ChEBI	+	degradation
[Ref.: #43691]	D-mannose ChEBI	+/-	degradation
[Ref.: #43691]	gelatin ChEBI	-	hydrolysis
[Ref.: #43691]	glucose ChEBI	+	builds acid from
[Ref.: #43691]	glucose ChEBI	+	degradation
[Ref.: #43691]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43691]	L-arabinose ChEBI	-	degradation
[Ref.: #43691]	maltose ChEBI	+	builds acid from
[Ref.: #43691]	maltose ChEBI	+	degradation
[Ref.: #43691]	melibiose ChEBI	-	degradation
[Ref.: #43691]	myo-inositol ChEBI	+	degradation
[Ref.: #43691]	raffinose ChEBI	+/-	degradation
[Ref.: #43691]	ribose ChEBI	-	degradation
[Ref.: #43691]	sorbose ChEBI	-	degradation
[Ref.: #43691]	starch ChEBI	-	hydrolysis
[Ref.: #43691]	sucrose ChEBI	-	degradation
[Ref.: #43691]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43691]	xanthine ChEBI	-	hydrolysis
[Ref.: #43691]	xylitol ChEBI	-	degradation
[Ref.: #43691]	xylose ChEBI	+	builds acid from
[Ref.: #43691]	xylose ChEBI	+	degradation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43691]	acid phosphatase	+	3.1.3.2
[Ref.: #43691]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43691]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43691]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43691]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43691]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43691]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43691]	beta-galactosidase	+	3.2.1.23
[Ref.: #43691]	beta-glucosidase	+	3.2.1.21
[Ref.: #43691]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43691]	cystine aminopeptidase	+	3.4.11.3
[Ref.: #43691]	esterase (C 4)	+
[Ref.: #43691]	esterase Lipase (C 8)	+
[Ref.: #43691]	leucine aminopeptidase	+	3.4.1.1
[Ref.: #43691]	lipase (C 14)	-
[Ref.: #43691]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43691]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43691]	phosphoamidase	-	3.9.1.1
[Ref.: #43691]	trypsin	+	3.4.21.4
[Ref.: #43691]	valine aminopeptidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67621]	Sample type/isolated from	soil
[Ref.: #67621]	Geographic location (country and/or sea, region)	Nakhon Sawan
[Ref.: #67621]	Country	Thailand
[Ref.: #67621]	Country ISO 3 Code	THA
[Ref.: #67621]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HM043728 (>99% sequence identity) for Sphaerimonospora from Microbeatlas

Aquatic Samples	6
Soil Samples	63
Animal Samples	16
Plant Samples	12
Total Samples	97

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67621]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67621]		36_DSM_111644_900R		ENA
[Ref.: #43691]	16S rRNA gene sequence	HM043728		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphaerimonospora thailandensis NBRC 107569	GCA_016863115	contig	GenBank	795644 tax ID	*
[Ref.: #66792]	Sphaerimonospora thailandensis strain NBRC 107569	795644.3	wgs	PATRIC	795644 tax ID	*

[Ref.: #43691]

GC-content

70 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphaerimonospora thailandensis strain NBRC 107569 PATRIC: 795644.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphaerimonospora thailandensis strain NBRC 107569 PATRIC: 795644.3
[Ref.: #69480]	motile	no	93.848	no
[Ref.: #69480]	flagellated	no	98.468	yes
[Ref.: #69480]	gram-positive	yes	87.317	yes
[Ref.: #69480]	anaerobic	no	98.382	no
[Ref.: #69480]	halophile	no	93.309	no
[Ref.: #69480]	spore-forming	yes	93.248	yes
[Ref.: #69480]	thermophile	no	93.583	yes
[Ref.: #69480]	glucose-util	yes	88.863	no
[Ref.: #69480]	aerobic	yes	86.808	no
[Ref.: #69480]	glucose-ferment	no	91.807	no

Availability in culture collections External links

[Ref.: #67621]

Culture collection no.

BCC 41490, NBRC 107569, DSM 111644, NRRL B-24806

[Ref.: #96806]

SI-ID 404468

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphaerimonospora triticiradicis sp. nov., a novel actinomycete isolated from a root of wheat (Triticum aestivum L.).	Han C, Hu J, Zhao J, Tian Y, Jiang S, Guo X, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-018-1170-1	2018	*
Phylogeny	Proposal of Sphaerimonospora cavernae gen. nov., sp. nov. and transfer of Microbispora mesophila (Zhang et al., 1998) to Sphaerimonospora mesophila comb. nov. and Microbispora thailandensis (Duangmal et al., 2012) to Sphaerimonospora thailandensis comb. nov.	Mingma R, Duangmal K, Take A, Inahashi Y, O Mura S, Takahashi YK, Matsumoto A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000935	2016	*
Phylogeny	Microbispora thailandensis sp. nov., an actinomycete isolated from cave soil.	Duangmal K, Mingma R, Pathom-aree W, Niyomvong N, Inahashi Y, Matsumoto A, Thamchaipenet A, Takahashi Y	J Antibiot (Tokyo)	10.1038/ja.2012.57	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43691

Ratchanee Mingma, Kannika Duangmal, Akira Také, Yuki Inahashi, Satoshi Omura, Yoko Takahashi, Atsuko Matsumoto: Proposal of Sphaerimonospora cavernae gen. nov., sp. nov. and transfer of Microbispora mesophila (Zhang et al., 1998) to Sphaerimonospora mesophila comb. nov. and Microbispora thailandensis (Duangmal et al., 2012) to Sphaerimonospora thailandensis comb. nov.. IJSEM 66: 1735 - 1744 2016 ( DOI 10.1099/ijsem.0.000935 , PubMed 26822211 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67621

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111644

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96806

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404468.1 )

* These data were automatically processed and therefore are not curated

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Sphaerimonospora thailandensis strain NBRC 107569

Sphaerimonospora thailandensis strain NBRC 107569

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