Shewanella canadensis (DSM 18399, CCUG 54553, NCIMB 14238)

Name: Shewanella canadensis (DSM 18399, CCUG 54553, NCIMB 14238)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14080

Type strain

Strain Designation HAW-EB2

Culture col. no. DSM 18399 CCUG 54553 NCIMB 14238 CIP 109520 HAW-EB2

NCBI tax ID(s) 271096

Special Collections DSMZ CCUG CIP Literature strains

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Shewanella canadensis HAW-EB2 is an aerobe, psychrophilic, Gram-negative prokaryote that was isolated from marine sediment.

Gram-negative motile rod-shaped aerobe psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 309558

CCUG 54553,NCIMB 14238,DSM 18399,CIP 109520

@ref 20215

Last LPSN update 2025-12-16 09:50:15

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella canadensis

Full scientific name Shewanella canadensis Zhao et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31886	negative	2.5 µm	0.7 µm	rod-shaped
117125	negative			rod-shaped
125439	negative				99.6

Colony morphology

60227

Incubation period2-3 days

Pigmentation

31886

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7526	MODIFIED MEDIUM 514 (DSMZ Medium 1173)	Medium recipe at MediaDive	Name: MODIFIED MEDIUM 514 (DSMZ Medium 1173) Composition: NaCl 39.45 g/l Bacto peptone 10.0 g/l MgCl2 5.9 g/l Yeast extract 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
7526	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33305	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
117125	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7526	positive	growth	10	psychrophilic
31886	positive	growth	04-25
31886	positive	optimum	10	psychrophilic
33305	positive	growth	10	psychrophilic
60227	positive	growth	22	psychrophilic

Physiology and metabolism

Oxygen tolerance

60227

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
31886
125439		99.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31886	NaCl	positive	growth	01-03 %
31886	NaCl	positive	optimum	3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31886	30089 ChEBI	acetate	+	carbon source
31886	16449 ChEBI	alanine	+	carbon source
31886	35391 ChEBI	aspartate	+	carbon source
31886	17596 ChEBI	inosine	+	carbon source
31886	24996 ChEBI	lactate	+	carbon source
31886	25017 ChEBI	leucine	+	carbon source
31886	25115 ChEBI	malate	+	carbon source
31886	51850 ChEBI	methyl pyruvate	+	carbon source
31886	506227 ChEBI	N-acetylglucosamine	+	carbon source
31886	17632 ChEBI	nitrate	+	reduction
117125	17632 ChEBI	nitrate	+	reduction
117125	16301 ChEBI	nitrite	-	reduction
31886	26271 ChEBI	proline	+	carbon source
31886	17272 ChEBI	propionate	+	carbon source
31886	17822 ChEBI	serine	+	carbon source
31886	30031 ChEBI	succinate	+	carbon source
31886	17748 ChEBI	thymidine	+	carbon source
31886	53423 ChEBI	tween 40	+	carbon source
31886	53426 ChEBI	tween 80	+	carbon source
31886	16704 ChEBI	uridine	+	carbon source
31886	31011 ChEBI	valerate	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31886	16136 ChEBI	hydrogen sulfide
117125	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
31886	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31886	catalase	+	1.11.1.6
117125	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31886	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
31886	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
117125	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
31886	urease	+	3.5.1.5
117125	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
117125	-	+	+	-	-	+	-	-	+	+	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
7526	marine sediment		Atlantic Ocean, near Halifax harbour, Emerald Basin	Canada	CAN	North America
60227	Marine sediment	2003-06-01	near Halifax,Atlantic Ocean	Canada	CAN	North America
117125	Environment, Cold marine sediment, military waste dumping site		Emerald basin, Atlantic Ocean, Halifax	Canada	CAN	North America	2003

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7526	1	Risk group (German classification) According to TRBA 466
117125	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM396622v1 assembly for Shewanella canadensis HAW-EB2	contig	GCA_003966225	271096.3	2902540964	271096	66.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7526	Shewanella canadensis strain HAW-EB2 16S ribosomal RNA gene, partial sequence	AY579749	1285		271096

GC content

31886

GC-content (mol%)46.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shewanella canadensis HAW-EB2
NCBI: GCA_003966225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	yes	82.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	75.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella nanhaiensis sp. nov., a marine bacterium isolated from sediment of South China Sea, and emended descriptions of Shewanella woodyi, Shewanella hanedai and Shewanella canadensis.	Cao WR, Li X, Sun YY, Jiang MY, Xu XD, Li YJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005152	2021
Phylogeny	Isolation and characterization of a novel bacterial strain Shewanella marinisediminis sp. nov. from deep-sea sediments.	Kim YS, Park JS, Yang HO, Kwon HC	J Environ Biol		2013
Phylogeny	Shewanella canadensis sp. nov. and Shewanella atlantica sp. nov., manganese dioxide- and hexahydro-1,3,5-trinitro-1,3,5-triazine-reducing, psychrophilic marine bacteria.	Zhao JS, Manno D, Thiboutot S, Ampleman G, Hawari J	Int J Syst Evol Microbiol	10.1099/ijs.0.64596-0	2007

References

#7526	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18399
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28146	IJSEM 2155 2007 ( DOI 10.1099/ijs.0.64596-0 , PubMed 17766891 )
#31886	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28146
#33305	; Curators of the CIP;
#60227	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54553
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#117125	Collection of Institut Pasteur ; Curators of the CIP; CIP 109520
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella canadensis (DSM 18399, CCUG 54553, NCIMB 14238)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003966225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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