Name: Shewanella canadensis HAW-EB2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14080

Type strain:

Species: Shewanella canadensis

Strain Designation: HAW-EB2

Culture col. no.: DSM 18399, CCUG 54553, NCIMB 14238, CIP 109520

Strain history: CIP <- 2007, J. S. Zhao, Nat. Res. Council Canada, Montreal, Canada: strain HAW-EB2

NCBI tax ID(s): 271096 (species)

SI-ID 309558

CCUG 54553, NCIMB 14238, DSM 18399, CIP 109520

Section

Shewanella canadensis HAW-EB2 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella canadensis**
	Full Scientific Name (LPSN)	Shewanella canadensis Zhao et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31886]	Gram stain	negative
[Ref.: #117125]	Gram stain	negative

[Ref.: #31886]	Cell length	2.5 µm

[Ref.: #31886]	Cell width	0.7 µm

[Ref.: #31886]	Cell shape	rod-shaped
[Ref.: #117125]	Cell shape	rod-shaped

[Ref.: #31886]	Motility	yes
[Ref.: #117125]	Motility	yes

[Ref.: #60227]

Incubation period

2-3 days

[Ref.: #31886]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7526]

Culture medium

MODIFIED MEDIUM 514 (DSMZ Medium 1173)

[Ref.: #7526]

Culture medium growth

[Ref.: #7526]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7526]

Culture medium composition

expand / minimize

[Ref.: #7526]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7526]

Culture medium growth

[Ref.: #7526]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #33305]

Culture medium

Marine agar (MA)

[Ref.: #33305]

Culture medium growth

[Ref.: #33305]

Culture medium composition

expand / minimize

[Ref.: #117125]

Culture medium

CIP Medium 13

[Ref.: #117125]

Culture medium growth

[Ref.: #117125]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7526]	growth	10 °C
[Ref.: #31886]	growth	04-25 °C
[Ref.: #31886]	optimum	10 °C
[Ref.: #33305]	growth	10 °C
[Ref.: #60227]	growth	22 °C

[Ref.: #7526]	Temperature range	psychrophilic
[Ref.: #31886]	Temperature range	psychrophilic
[Ref.: #33305]	Temperature range	psychrophilic
[Ref.: #60227]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60227]

Oxygen tolerance

aerobe

[Ref.: #31886]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31886]		NaCl		growth	01-03	%
[Ref.: #31886]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31886]	acetate ChEBI	+	carbon source
[Ref.: #31886]	alanine ChEBI	+	carbon source
[Ref.: #31886]	aspartate ChEBI	+	carbon source
[Ref.: #31886]	inosine ChEBI	+	carbon source
[Ref.: #31886]	lactate ChEBI	+	carbon source
[Ref.: #31886]	leucine ChEBI	+	carbon source
[Ref.: #31886]	malate ChEBI	+	carbon source
[Ref.: #31886]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #31886]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31886]	nitrate ChEBI	+	reduction
[Ref.: #117125]	nitrate ChEBI	+	reduction
[Ref.: #117125]	nitrite ChEBI	-	reduction
[Ref.: #31886]	proline ChEBI	+	carbon source
[Ref.: #31886]	propionate ChEBI	+	carbon source
[Ref.: #31886]	serine ChEBI	+	carbon source
[Ref.: #31886]	succinate ChEBI	+	carbon source
[Ref.: #31886]	thymidine ChEBI	+	carbon source
[Ref.: #31886]	tween 40 ChEBI	+	carbon source
[Ref.: #31886]	tween 80 ChEBI	+	carbon source
[Ref.: #31886]	uridine ChEBI	+	carbon source
[Ref.: #31886]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31886]		hydrogen sulfide ChEBI	yes
[Ref.: #117125]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #31886]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31886]	catalase	+	1.11.1.6
[Ref.: #117125]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31886]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #31886]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #117125]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #31886]	urease	+	3.5.1.5
[Ref.: #117125]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117125]	11926	-	+	+	-	-	+	-	-	+	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7526]	Sample type/isolated from	marine sediment
[Ref.: #7526]	Geographic location (country and/or sea, region)	Atlantic Ocean, near Halifax harbour, Emerald Basin
[Ref.: #7526]	Country	Canada
[Ref.: #7526]	Country ISO 3 Code	CAN
[Ref.: #7526]	Continent	North America

[Ref.: #60227]	Sample type/isolated from	Marine sediment
[Ref.: #60227]	Sampling date	2003-06-01
[Ref.: #60227]	Geographic location (country and/or sea, region)	near Halifax,Atlantic Ocean
[Ref.: #60227]	Country	Canada
[Ref.: #60227]	Country ISO 3 Code	CAN
[Ref.: #60227]	Continent	North America

[Ref.: #117125]	Sample type/isolated from	Environment, Cold marine sediment, military waste dumping site
[Ref.: #117125]	Geographic location (country and/or sea, region)	Emerald basin, Atlantic Ocean, Halifax
[Ref.: #117125]	Country	Canada
[Ref.: #117125]	Country ISO 3 Code	CAN
[Ref.: #117125]	Continent	North America
[Ref.: #117125]	Isolation date	2003
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7526]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117125]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7526]	Shewanella canadensis strain HAW-EB2 16S ribosomal RNA gene, partial sequence	AY579749	1285	ENA	271096 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella canadensis HAW-EB2	GCA_003966225	contig	GenBank	271096 tax ID	*
[Ref.: #66792]	Shewanella canadensis HAW-EB2	2902540964	draft	JGI IMG/M	271096 tax ID	*

[Ref.: #31886]

GC-content

46.4 mol%

Availability in culture collections External links

[Ref.: #7526]

Culture collection no.

DSM 18399, CCUG 54553, NCIMB 14238, CIP 109520

[Ref.: #83249]

SI-ID 309558

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella nanhaiensis sp. nov., a marine bacterium isolated from sediment of South China Sea, and emended descriptions of Shewanella woodyi, Shewanella hanedai and Shewanella canadensis.	Cao WR, Li X, Sun YY, Jiang MY, Xu XD, Li YJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005152	2021	*
Phylogeny	Isolation and characterization of a novel bacterial strain Shewanella marinisediminis sp. nov. from deep-sea sediments.	Kim YS, Park JS, Yang HO, Kwon HC	J Environ Biol		2013	*
Phylogeny	Shewanella canadensis sp. nov. and Shewanella atlantica sp. nov., manganese dioxide- and hexahydro-1,3,5-trinitro-1,3,5-triazine-reducing, psychrophilic marine bacteria.	Zhao JS, Manno D, Thiboutot S, Ampleman G, Hawari J	Int J Syst Evol Microbiol	10.1099/ijs.0.64596-0	2007	*

References

#7526

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18399

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31886

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28146 (see below)

#33305 ; Curators of the CIP;
#60227 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54553

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#83249

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID309558.1 )

#117125 Collection of Institut Pasteur ; Curators of the CIP; CIP 109520

#28146

IJSEM 2155 2007 ( DOI 10.1099/ijs.0.64596-0 , PubMed 17766891 )

* These data were automatically processed and therefore are not curated

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