Name: Shewanella atlantica HAW-EB5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14081

Type strain:

Species: Shewanella atlantica

Strain Designation: HAW-EB5

Culture col. no.: CIP 109519, DSM 18400, CCUG 54554, NCIMB 14239

Strain history: <- J.-S. Zhao, Biotechnol. Res. Inst., Natl. Res. Council of Canada, Montreal; HAW-EB5

NCBI tax ID(s): 271099 (species)

SI-ID 407346

DSM 18400, CCUG 54554

Section

Shewanella atlantica HAW-EB5 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella atlantica**
	Full Scientific Name (LPSN)	Shewanella atlantica Zhao et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31886]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #31886]	Cell length	3.5 µm

[Ref.: #31886]	Cell width	0.55 µm

[Ref.: #31886]	Cell shape	rod-shaped

[Ref.: #31886]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.687

[Ref.: #60228]

Incubation period

2-3 days

[Ref.: #31886]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7527]

Culture medium

MODIFIED MEDIUM 514 (DSMZ Medium 1173)

[Ref.: #7527]

Culture medium growth

[Ref.: #7527]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7527]

Culture medium composition

expand / minimize

[Ref.: #7527]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7527]

Culture medium growth

[Ref.: #7527]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7527]	growth	10 °C
[Ref.: #31886]	growth	04-25 °C
[Ref.: #31886]	optimum	10 °C
[Ref.: #60228]	growth	22 °C

[Ref.: #7527]	Temperature range	psychrophilic
[Ref.: #31886]	Temperature range	psychrophilic
[Ref.: #60228]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60228]

Oxygen tolerance

aerobe

[Ref.: #31886]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31886]		NaCl		growth	01-04	%
[Ref.: #31886]		NaCl		optimum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31886]	acetate ChEBI	+	carbon source
[Ref.: #31886]	alanine ChEBI	+	carbon source
[Ref.: #31886]	aspartate ChEBI	+	carbon source
[Ref.: #31886]	fructose ChEBI	+	carbon source
[Ref.: #31886]	inosine ChEBI	+	carbon source
[Ref.: #31886]	lactate ChEBI	+	carbon source
[Ref.: #31886]	leucine ChEBI	+	carbon source
[Ref.: #31886]	malate ChEBI	+	carbon source
[Ref.: #31886]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #31886]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31886]	nitrate ChEBI	+	reduction
[Ref.: #31886]	proline ChEBI	+	carbon source
[Ref.: #31886]	serine ChEBI	+	carbon source
[Ref.: #31886]	succinate ChEBI	+	carbon source
[Ref.: #31886]	sucrose ChEBI	+	carbon source
[Ref.: #31886]	threonine ChEBI	+	carbon source
[Ref.: #31886]	thymidine ChEBI	+	carbon source
[Ref.: #31886]	tween 40 ChEBI	+	carbon source
[Ref.: #31886]	tween 80 ChEBI	+	carbon source
[Ref.: #31886]	uridine ChEBI	+	carbon source
[Ref.: #31886]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31886]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #31886]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31886]	catalase	+	1.11.1.6
[Ref.: #31886]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31886]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7527]	Sample type/isolated from	marine sediment
[Ref.: #7527]	Geographic location (country and/or sea, region)	Atlantic Ocean, near Halifax harbour, Emerald Basin
[Ref.: #7527]	Country	Canada
[Ref.: #7527]	Country ISO 3 Code	CAN
[Ref.: #7527]	Continent	North America

[Ref.: #60228]	Sample type/isolated from	Marine sediment
[Ref.: #60228]	Sampling date	2003-06-01
[Ref.: #60228]	Geographic location (country and/or sea, region)	near Halifax,Atlantic Ocean
[Ref.: #60228]	Country	Canada
[Ref.: #60228]	Country ISO 3 Code	CAN
[Ref.: #60228]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7527]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7527]	Shewanella atlantica strain HAW-EB5 16S ribosomal RNA gene, partial sequence	AY579752	1295	ENA	271099 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella atlantica HAW-EB5	GCA_003966265	scaffold	GenBank	271099 tax ID	*
[Ref.: #66792]	Shewanella atlantica HAW-EB5	2900429846	draft	JGI IMG/M	271099 tax ID	*

[Ref.: #31886]

GC-content

46.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shewanella atlantica HAW-EB5 NCBI: GCA_003966265.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella atlantica HAW-EB5 NCBI: GCA_003966265.1
[Ref.: #69480]	motile	yes	92.621	yes
[Ref.: #69480]	flagellated	yes	91.505	no
[Ref.: #69480]	gram-positive	no	98.949	yes
[Ref.: #69480]	anaerobic	no	95.469	yes
[Ref.: #69480]	aerobic	no	73.89	no
[Ref.: #69480]	halophile	yes	59.127	no
[Ref.: #69480]	spore-forming	no	94.556	yes
[Ref.: #69480]	glucose-util	yes	90.655	no
[Ref.: #69480]	thermophile	no	99.548	yes
[Ref.: #69480]	glucose-ferment	no	58.292	no

Availability in culture collections External links

[Ref.: #7527]

Culture collection no.

CIP 109519, DSM 18400, CCUG 54554, NCIMB 14239

[Ref.: #83250]

SI-ID 407346

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella canadensis sp. nov. and Shewanella atlantica sp. nov., manganese dioxide- and hexahydro-1,3,5-trinitro-1,3,5-triazine-reducing, psychrophilic marine bacteria.	Zhao JS, Manno D, Thiboutot S, Ampleman G, Hawari J	Int J Syst Evol Microbiol	10.1099/ijs.0.64596-0	2007	*

References

#7527

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18400

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31886

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28146 (see below)

#60228 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54554

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83250

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407346.1 )

#28146

IJSEM 2155 2007 ( DOI 10.1099/ijs.0.64596-0 , PubMed 17766891 )

* These data were automatically processed and therefore are not curated

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