Nesterenkonia pannonica (NCAIM B 02606, DSM 29786, BV-35)

Name: Nesterenkonia pannonica (NCAIM B 02606, DSM 29786, BV-35)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140783

Type strain

Strain Designation BV-35

Culture col. no. NCAIM B 02606 DSM 29786 BV-35

NCBI tax ID(s) 1548602

Special Collections DSMZ Literature strains

History DSMZ <- A. K. Borsodi, Eötvös Loránd Univ. Budapest, Hungary; BV-35

Links

Nesterenkonia pannonica BV-35 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from the water of the Böddi-szék soda pan.

Gram-negative rod-shaped colony-forming obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400779

NCAIM B 02606,DSM 29786

@ref 20215

Last LPSN update 2026-05-29 08:39:48

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Nesterenkonia

Species Nesterenkonia pannonica

Full scientific name Nesterenkonia pannonica Borsodi et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
43561	negative	0.6-0.8 µm	0.4-0.6 µm	rod-shaped
125439	positive					92.995

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
43561	Orange	circular	1-2 days	modified R2A

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43561	modified R2A
64899	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
43561	positive	growth	10-40
43561	positive	optimum	25-28
64899	positive	growth	20

Culture pH

@ref	Ability	Type	PH	PH range
43561	positive	optimum	9-10
43561	positive	growth	6-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43561	obligate aerobe
125439	facultative anaerobe	90.277

Spore formation

43561

Spore formationno

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43561		NaCl	positive	growth	0-15 %(w/v)
43561	moderately halophilic	NaCl	positive	optimum	5-7 %(w/v)

Murein

@ref	Murein short key	Type
64899	A11.54	A4alpha L-Lys-L-Glu

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43561		casein	-	hydrolysis
43561	16947 ChEBI	citrate	-	assimilation
43561	17634 ChEBI	D-glucose	-	builds acid from
43561	17634 ChEBI	D-glucose	-	builds gas from
43561	4853 ChEBI	esculin	+	hydrolysis
43561	5291 ChEBI	gelatin	-	hydrolysis
43561	17234 ChEBI	glucose	-	fermentation
43561	17632 ChEBI	nitrate	-	reduction
43561	28017 ChEBI	starch	-	hydrolysis
43561	53426 ChEBI	tween 80	-	hydrolysis
43561	16199 ChEBI	urea	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite
43561	15688 ChEBI	acetoin
43561	16136 ChEBI	hydrogen sulfide
43561	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
43561	15688 ChEBI	acetoin	-
43561	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
43561	acid phosphatase	-	3.1.3.2
43561	alkaline phosphatase	+	3.1.3.1
43561	alpha-chymotrypsin	-	3.4.21.1
43561	alpha-fucosidase	-	3.2.1.51
43561	alpha-galactosidase	-	3.2.1.22
43561	alpha-glucosidase	-	3.2.1.20
43561	alpha-mannosidase	-	3.2.1.24
43561	beta-galactosidase	-	3.2.1.23
43561	beta-glucosidase	-	3.2.1.21
43561	beta-glucuronidase	-	3.2.1.31
43561	catalase	+	1.11.1.6
43561	cystine arylamidase	-	3.4.11.3
43561	cytochrome oxidase	-	1.9.3.1
43561	esterase (C 4)	+
43561	esterase Lipase (C 8)	+
43561	leucine arylamidase	+	3.4.11.1
43561	lipase (C 14)	-
43561	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43561	naphthol-AS-BI-phosphohydrolase	+
43561	trypsin	-	3.4.21.4
43561	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Condition	#Alkaline
#Condition	#Saline
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43561	the water of the Böddi-szék soda pan	Ksikunság National Park	Hungary	HUN	Europe	46.766	19.15 46.766/19.15
64899	water of soda pan	Kiskunság National Park, Böddi-szék soda pan (46° 46' N 019° 09' E)	Hungary	HUN	Europe	46.7667	19.15 46.7667/19.15

Taxonmaps

69479

Global distribution of 16S sequence LN610504 (>99% sequence identity) for Nesterenkonia pannonica subclade from Microbeatlas

Aquatic Samples	64
Soil Samples	45
Animal Samples	468
Plant Samples	31
Total Samples	608

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64899	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	Nesterenkonia pannonica strain DSM 29786	complete		1548602.3	1548602	71.47
66792	ASM1957595v1 assembly for Nesterenkonia pannonica DSM 29786	complete	GCA_019575955	1548602.4	1548602	52.66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64899	Nesterenkonia sp. BV-35 partial 16S rRNA gene, strain BV-35	LN610504	1457		1548602

GC content

64899

GC-content (mol%)65.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nesterenkonia pannonica strain DSM 29786
BV-BRC: 1548602.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.28	no
125439	motility	BacteriaNetⓘ	no	88.04	no
125439	gram_stain	BacteriaNetⓘ	positive	93.00	no
125439	spore_formation	BacteriaNetⓘ	no	89.21	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nesterenkonia pannonica DSM 29786
NCBI: GCA_019575955.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.33	yes
125438	anaerobic	anaerobicⓘ	no	93.80	no
125438	aerobic	aerobicⓘ	yes	84.39	no
125438	spore-forming	spore-formingⓘ	no	75.92	yes
125438	thermophilic	thermophileⓘ	no	95.30	yes
125438	flagellated	motile2+ⓘ	no	71.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nesterenkonia pannonica sp. nov., a novel alkaliphilic and moderately halophilic actinobacterium.	Borsodi AK, Szili-Kovacs T, Schumann P, Sproer C, Marialigeti K, Toth E	Int J Syst Evol Microbiol	10.1099/ijsem.0.002263	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43561	Andrea K. Borsodi, Tibor Szili-Kovacs, Peter Schumann, Cathrin Spröer, Karoly Marialigeti, Erika Tóth: Nesterenkonia pannonica sp. nov., a novel alkaliphilic and moderately halophilic actinobacterium. IJSEM 67: 4116 - 4120 2017 ( DOI 10.1099/ijsem.0.002263 , PubMed 28905704 )
#64899	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29786
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nesterenkonia pannonica (NCAIM B 02606, DSM 29786, BV-35)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_019575955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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