Name: Nocardioides agrisoli djl-8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140784

Type strain:

Species: Nocardioides agrisoli

Strain Designation: djl-8

Culture col. no.: KCTC 39844, CCTCC AB 2017058

Strain history: <- Qing Hong, Nanjing Agricultural Univ.

NCBI tax ID(s): 1882242 (species)

Special Collections

Section

Nocardioides agrisoli djl-8 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from pesticide-contaminated farmland soil.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides agrisoli**
	Full Scientific Name (LPSN)	Nocardioides agrisoli Wang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43562]	Gram stain	positive

[Ref.: #43562]	Cell length	0.9-1.3 µm

[Ref.: #43562]	Cell width	0.4-0.6 µm

[Ref.: #43562]	Cell shape	rod-shaped

[Ref.: #43562]	Motility	no

[Ref.: #43562]	Colony size	0.5-1 mm
[Ref.: #43562]	Colony color	milky white
[Ref.: #43562]	Colony shape	circular
[Ref.: #43562]	Incubation period	5 days
[Ref.: #43562]	Cultivation medium used	Luria Bertani agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43562]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43562]

Culture medium growth

		Temperature
[Ref.: #43562]	growth	25-37 °C
[Ref.: #43562]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43562]			optimum	6.5
[Ref.: #43562]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43562]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43562]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43562]		NaCl		growth	0.5-4	%(w/v)
[Ref.: #43562]		NaCl		optimum	1.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43562]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43562]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43562]	adipate ChEBI	+	assimilation
[Ref.: #43562]	amygdalin ChEBI	-	assimilation
[Ref.: #43562]	arbutin ChEBI	-	assimilation
[Ref.: #43562]	casein	+	hydrolysis
[Ref.: #43562]	cellobiose ChEBI	+	assimilation
[Ref.: #43562]	citrate ChEBI	-	assimilation
[Ref.: #43562]	D-arabinose ChEBI	+	assimilation
[Ref.: #43562]	D-arabitol ChEBI	+	assimilation
[Ref.: #43562]	D-fructose ChEBI	-	assimilation
[Ref.: #43562]	D-fucose ChEBI	+	assimilation
[Ref.: #43562]	D-galactose ChEBI	-	assimilation
[Ref.: #43562]	D-glucose ChEBI	+	assimilation
[Ref.: #43562]	D-lyxose ChEBI	-	assimilation
[Ref.: #43562]	D-mannose ChEBI	+	assimilation
[Ref.: #43562]	D-ribose ChEBI	-	assimilation
[Ref.: #43562]	D-tagatose ChEBI	-	assimilation
[Ref.: #43562]	D-xylose ChEBI	-	assimilation
[Ref.: #43562]	decanoate ChEBI	-	assimilation
[Ref.: #43562]	erythritol ChEBI	-	assimilation
[Ref.: #43562]	esculin ChEBI	-	assimilation
[Ref.: #43562]	esculin ChEBI	-	hydrolysis
[Ref.: #43562]	galactitol ChEBI	+	assimilation
[Ref.: #43562]	gelatin ChEBI	+	hydrolysis
[Ref.: #43562]	gentiobiose ChEBI	-	assimilation
[Ref.: #43562]	gluconate ChEBI	+	assimilation
[Ref.: #43562]	glycerol ChEBI	-	assimilation
[Ref.: #43562]	glycogen ChEBI	+	assimilation
[Ref.: #43562]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43562]	inulin ChEBI	-	assimilation
[Ref.: #43562]	L-arabinose ChEBI	-	assimilation
[Ref.: #43562]	L-arabitol ChEBI	+	assimilation
[Ref.: #43562]	L-fucose ChEBI	+	assimilation
[Ref.: #43562]	L-rhamnose ChEBI	+	assimilation
[Ref.: #43562]	L-sorbose ChEBI	-	assimilation
[Ref.: #43562]	L-xylose ChEBI	-	assimilation
[Ref.: #43562]	lactose ChEBI	+	assimilation
[Ref.: #43562]	malate ChEBI	+	assimilation
[Ref.: #43562]	maltose ChEBI	+	assimilation
[Ref.: #43562]	mannitol ChEBI	-	assimilation
[Ref.: #43562]	melezitose ChEBI	+	assimilation
[Ref.: #43562]	melibiose ChEBI	-	assimilation
[Ref.: #43562]	methyl alpha-D-mannoside ChEBI	+	assimilation
[Ref.: #43562]	methyl beta-D-xylopyranoside ChEBI	-	assimilation
[Ref.: #43562]	methyl D-glucoside ChEBI	+	assimilation
[Ref.: #43562]	myo-inositol ChEBI	-	assimilation
[Ref.: #43562]	nitrate ChEBI	-	reduction
[Ref.: #43562]	phenylacetate ChEBI	-	assimilation
[Ref.: #43562]	raffinose ChEBI	-	assimilation
[Ref.: #43562]	ribitol ChEBI	+	assimilation
[Ref.: #43562]	salicin ChEBI	-	assimilation
[Ref.: #43562]	sorbitol ChEBI	+	assimilation
[Ref.: #43562]	starch ChEBI	+	hydrolysis
[Ref.: #43562]	sucrose ChEBI	+	assimilation
[Ref.: #43562]	trehalose ChEBI	+	assimilation
[Ref.: #43562]	turanose ChEBI	-	assimilation
[Ref.: #43562]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43562]	urea ChEBI	-	hydrolysis
[Ref.: #43562]	xanthine ChEBI	-	hydrolysis
[Ref.: #43562]	xylitol ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43562]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43562]	acid phosphatase	-	3.1.3.2
[Ref.: #43562]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43562]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43562]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43562]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43562]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43562]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43562]	beta-galactosidase	-	3.2.1.23
[Ref.: #43562]	beta-glucosidase	-	3.2.1.21
[Ref.: #43562]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43562]	catalase	+	1.11.1.6
[Ref.: #43562]	cystine arylamidase	+	3.4.11.3
[Ref.: #43562]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43562]	esterase (C 4)	-
[Ref.: #43562]	esterase Lipase (C 8)	-
[Ref.: #43562]	leucine arylamidase	-	3.4.11.1
[Ref.: #43562]	lipase (C 14)	-
[Ref.: #43562]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43562]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43562]	trypsin	-	3.4.21.4
[Ref.: #43562]	urease	-	3.5.1.5
[Ref.: #43562]	valine aminopeptidase	-
[Ref.: #43562]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43562]	Sample type/isolated from	pesticide-contaminated farmland soil
[Ref.: #43562]	Geographic location (country and/or sea, region)	Nanjing, Jiangsu Province
[Ref.: #43562]	Country	China
[Ref.: #43562]	Country ISO 3 Code	CHN
[Ref.: #43562]	Continent	Asia
[Ref.: #43562]	Geographic location	32.0330°/119.2830°

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Nanjing, Jiangsu Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43562]	Nocardioides agrisoli strain djl-8 16S ribosomal RNA gene, partial sequence	KX380192		GenBank ENA

[Ref.: #43562]

GC-content

69.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43562]

Culture collection no.

KCTC 39844, CCTCC AB 2017058

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides mangrovi sp. nov., a novel endophytic actinobacterium isolated from root of Kandelia candel.	Chen MS, Chen F, Chen XH, Zheng ZQ, Ma X, Tuo L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005295	2022	*
Phylogeny	Nocardioides agrisoli sp. nov., isolated from farmland soil.	Wang X, Jiang WK, Cui MD, Yang ZG, Yu X, Hu G, Zhang H, Hong Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.002158	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43562

Xiang Wang, Wan-Kui Jiang, Meng-Di Cui, Zhan-Gong Yang, Xing Yu, Gang Hu, Hao Zhang, Qing Hong: Nocardioides agrisoli sp. nov., isolated from farmland soil. IJSEM 67: 3722 - 3727 2017 ( DOI 10.1099/ijsem.0.002158 , PubMed 28875902 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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