Nocardioides agrisoli (KCTC 39844, CCTCC AB 2017058, djl-8)

Name: Nocardioides agrisoli (KCTC 39844, CCTCC AB 2017058, djl-8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140784

Type strain

Strain Designation djl-8

Culture col. no. KCTC 39844 CCTCC AB 2017058 djl-8

NCBI tax ID(s) 1882242

Special Collections KCTC Literature strains

History <- Qing Hong, Nanjing Agricultural Univ.

Links

Nocardioides agrisoli djl-8 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from pesticide-contaminated farmland soil.

Gram-positive rod-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 285825

KCTC 39844

@ref 20215

Last LPSN update 2026-02-09 11:33:42

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Nocardioides

Species Nocardioides agrisoli

Full scientific name Nocardioides agrisoli Wang et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43562	positive	0.9-1.3 µm	0.4-0.6 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43562	0.5-1 mm	milky white	circular	5 days	Luria Bertani agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43562	LB (Luria-Bertani) MEDIUM

Culture temp

@ref	Growth	Type	Temperature (°C)
43562	positive	growth	25-37
43562	positive	optimum	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
43562	positive	optimum	6.5
43562	positive	growth	5.5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43562	aerobe
67771	aerobe

Spore formation

43562

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43562	NaCl	positive	growth	0.5-4 %(w/v)
43562	NaCl	positive	optimum	1.5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43562	16808 ChEBI	2-dehydro-D-gluconate	-	assimilation
43562	58143 ChEBI	5-dehydro-D-gluconate	-	assimilation
43562	17128 ChEBI	adipate	+	assimilation
43562	27613 ChEBI	amygdalin	-	assimilation
43562	18305 ChEBI	arbutin	-	assimilation
43562		casein	+	hydrolysis
43562	17057 ChEBI	cellobiose	+	assimilation
43562	16947 ChEBI	citrate	-	assimilation
43562	17108 ChEBI	D-arabinose	+	assimilation
43562	18333 ChEBI	D-arabitol	+	assimilation
43562	15824 ChEBI	D-fructose	-	assimilation
43562	28847 ChEBI	D-fucose	+	assimilation
43562	12936 ChEBI	D-galactose	-	assimilation
43562	17634 ChEBI	D-glucose	+	assimilation
43562	62318 ChEBI	D-lyxose	-	assimilation
43562	16024 ChEBI	D-mannose	+	assimilation
43562	16988 ChEBI	D-ribose	-	assimilation
43562	16443 ChEBI	D-tagatose	-	assimilation
43562	65327 ChEBI	D-xylose	-	assimilation
43562	27689 ChEBI	decanoate	-	assimilation
43562	17113 ChEBI	erythritol	-	assimilation
43562	4853 ChEBI	esculin	-	assimilation
43562	4853 ChEBI	esculin	-	hydrolysis
43562	16813 ChEBI	galactitol	+	assimilation
43562	5291 ChEBI	gelatin	+	hydrolysis
43562	28066 ChEBI	gentiobiose	-	assimilation
43562	24265 ChEBI	gluconate	+	assimilation
43562	17754 ChEBI	glycerol	-	assimilation
43562	28087 ChEBI	glycogen	+	assimilation
43562	17368 ChEBI	hypoxanthine	-	hydrolysis
43562	15443 ChEBI	inulin	-	assimilation
43562	30849 ChEBI	L-arabinose	-	assimilation
43562	18403 ChEBI	L-arabitol	+	assimilation
43562	18287 ChEBI	L-fucose	+	assimilation
43562	62345 ChEBI	L-rhamnose	+	assimilation
43562	17266 ChEBI	L-sorbose	-	assimilation
43562	65328 ChEBI	L-xylose	-	assimilation
43562	17716 ChEBI	lactose	+	assimilation
43562	25115 ChEBI	malate	+	assimilation
43562	17306 ChEBI	maltose	+	assimilation
43562	29864 ChEBI	mannitol	-	assimilation
43562	6731 ChEBI	melezitose	+	assimilation
43562	28053 ChEBI	melibiose	-	assimilation
43562	43943 ChEBI	methyl alpha-D-mannoside	+	assimilation
43562	74863 ChEBI	methyl beta-D-xylopyranoside	-	assimilation
43562	37657 ChEBI	methyl D-glucoside	+	assimilation
43562	17268 ChEBI	myo-inositol	-	assimilation
43562	17632 ChEBI	nitrate	-	reduction
43562	18401 ChEBI	phenylacetate	-	assimilation
43562	16634 ChEBI	raffinose	-	assimilation
43562	15963 ChEBI	ribitol	+	assimilation
43562	17814 ChEBI	salicin	-	assimilation
43562	30911 ChEBI	sorbitol	+	assimilation
43562	28017 ChEBI	starch	+	hydrolysis
43562	17992 ChEBI	sucrose	+	assimilation
43562	27082 ChEBI	trehalose	+	assimilation
43562	32528 ChEBI	turanose	-	assimilation
43562	53426 ChEBI	tween 80	+	hydrolysis
43562	16199 ChEBI	urea	-	hydrolysis
43562	15318 ChEBI	xanthine	-	hydrolysis
43562	17151 ChEBI	xylitol	+	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43562	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43562	acid phosphatase	-	3.1.3.2
43562	alkaline phosphatase	-	3.1.3.1
43562	alpha-chymotrypsin	-	3.4.21.1
43562	alpha-fucosidase	-	3.2.1.51
43562	alpha-galactosidase	-	3.2.1.22
43562	alpha-glucosidase	-	3.2.1.20
43562	alpha-mannosidase	-	3.2.1.24
43562	beta-galactosidase	-	3.2.1.23
43562	beta-glucosidase	-	3.2.1.21
43562	beta-glucuronidase	-	3.2.1.31
43562	catalase	+	1.11.1.6
43562	cystine arylamidase	+	3.4.11.3
43562	cytochrome oxidase	+	1.9.3.1
43562	esterase (C 4)	-
43562	esterase Lipase (C 8)	-
43562	leucine arylamidase	-	3.4.11.1
43562	lipase (C 14)	-
43562	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43562	naphthol-AS-BI-phosphohydrolase	+/-
43562	trypsin	-	3.4.21.4
43562	urease	-	3.5.1.5
43562	valine aminopeptidase	-
43562	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	-
#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43562	pesticide-contaminated farmland soil	Nanjing, Jiangsu Province	China	CHN	Asia	32.033	119.283 32.033/119.283
67771	From soil	Nanjing, Jiangsu Province	China	CHN	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43562	Nocardioides agrisoli strain djl-8 16S ribosomal RNA gene, partial sequence	KX380192

GC content

@ref	GC-content (mol%)	Method
43562	69.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides mangrovi sp. nov., a novel endophytic actinobacterium isolated from root of Kandelia candel.	Chen MS, Chen F, Chen XH, Zheng ZQ, Ma X, Tuo L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005295	2022
Phylogeny	Nocardioides agrisoli sp. nov., isolated from farmland soil.	Wang X, Jiang WK, Cui MD, Yang ZG, Yu X, Hu G, Zhang H, Hong Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.002158	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43562	Xiang Wang, Wan-Kui Jiang, Meng-Di Cui, Zhan-Gong Yang, Xing Yu, Gang Hu, Hao Zhang, Qing Hong: Nocardioides agrisoli sp. nov., isolated from farmland soil. IJSEM 67: 3722 - 3727 2017 ( DOI 10.1099/ijsem.0.002158 , PubMed 28875902 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Nocardioides agrisoli (KCTC 39844, CCTCC AB 2017058, djl-8)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media