Larkinella ripae (KCTC 42996, JCM 31657, 15J11-11)

Name: Larkinella ripae (KCTC 42996, JCM 31657, 15J11-11)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140767

Type strain

Strain Designation 15J11-11

Culture col. no. KCTC 42996 JCM 31657 15J11-11

NCBI tax ID(s) 1892557

Special Collections JCM KCTC Literature strains

History H.-Y. Jung; Kyungpook Natl. Univ., South Korea; 15J11-11. <- Myung Kyum, Kim, Seoul Womens Univ.

Links

Larkinella ripae 15J11-11 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from a soil sample collected from the seashore.

Gram-negative motile rod-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27243

KCTC 42996,JCM 31657

@ref 20215

Last LPSN update 2026-02-09 11:33:42

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Spirosomataceae

Genus Larkinella

Species Larkinella ripae

Full scientific name Larkinella ripae Lee et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
43545	negative	1.3-2.4 µm	0.8-1.1 µm	rod-shaped		gliding

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43545	0.5-1.5 mm	pale pink, translucent	circular	3 days	R2A plates

Pigmentation

@ref	Production	Name
43545		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
43545	R2A plates

Culture temp

@ref	Growth	Type	Temperature (°C)
43545	positive	growth	15-30
43545	positive	optimum	25
67770	positive	growth	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH
43545	positive	optimum	7
43545	positive	growth	6-7

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43545		NaCl	positive	growth	0-2 %(w/v)
43545	non-halophilic	NaCl	positive	optimum	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43545	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
43545	16808 ChEBI	2-dehydro-D-gluconate	+/-	assimilation
43545	16193 ChEBI	3-hydroxybenzoate	-	assimilation
43545	37054 ChEBI	3-hydroxybutyrate	-	assimilation
43545	17879 ChEBI	4-hydroxybenzoate	-	assimilation
43545	58143 ChEBI	5-dehydro-D-gluconate	+/-	assimilation
43545	58143 ChEBI	5-dehydro-D-gluconate	+/-	builds acid from
43545	30089 ChEBI	acetate	-	assimilation
43545	17128 ChEBI	adipate	-	assimilation
43545	27613 ChEBI	amygdalin	+/-	builds acid from
43545	18305 ChEBI	arbutin	+	builds acid from
43545	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43545		casein	-	hydrolysis
43545	17057 ChEBI	cellobiose	+	builds acid from
43545	17029 ChEBI	chitin	-	hydrolysis
43545	16947 ChEBI	citrate	-	assimilation
43545	17108 ChEBI	D-arabinose	+	builds acid from
43545	18333 ChEBI	D-arabitol	-	builds acid from
43545	15824 ChEBI	D-fructose	+	builds acid from
43545	28847 ChEBI	D-fucose	+/-	builds acid from
43545	12936 ChEBI	D-galactose	+	builds acid from
43545	17634 ChEBI	D-glucose	+	assimilation
43545	17634 ChEBI	D-glucose	+	builds acid from
43545	62318 ChEBI	D-lyxose	+	builds acid from
43545	16899 ChEBI	D-mannitol	-	assimilation
43545	16899 ChEBI	D-mannitol	-	builds acid from
43545	16024 ChEBI	D-mannose	+	assimilation
43545	16024 ChEBI	D-mannose	+	builds acid from
43545	16988 ChEBI	D-ribose	+/-	assimilation
43545	16988 ChEBI	D-ribose	+/-	builds acid from
43545	17924 ChEBI	D-sorbitol	-	assimilation
43545	17924 ChEBI	D-sorbitol	-	builds acid from
43545	16443 ChEBI	D-tagatose	+	builds acid from
43545	65327 ChEBI	D-xylose	+	builds acid from
43545	27689 ChEBI	decanoate	-	assimilation
43545	17113 ChEBI	erythritol	-	builds acid from
43545	4853 ChEBI	esculin	+	builds acid from
43545	4853 ChEBI	esculin	+	hydrolysis
43545	16813 ChEBI	galactitol	-	builds acid from
43545	5291 ChEBI	gelatin	-	hydrolysis
43545	28066 ChEBI	gentiobiose	+	builds acid from
43545	24265 ChEBI	gluconate	-	builds acid from
43545	24265 ChEBI	gluconate	+	assimilation
43545	17754 ChEBI	glycerol	-	builds acid from
43545	28087 ChEBI	glycogen	-	assimilation
43545	28087 ChEBI	glycogen	-	builds acid from
43545	15443 ChEBI	inulin	-	builds acid from
43545	17240 ChEBI	itaconate	-	assimilation
43545	16977 ChEBI	L-alanine	-	assimilation
43545	30849 ChEBI	L-arabinose	-	assimilation
43545	30849 ChEBI	L-arabinose	+/-	builds acid from
43545	18403 ChEBI	L-arabitol	-	builds acid from
43545	18287 ChEBI	L-fucose	-	assimilation
43545	18287 ChEBI	L-fucose	+/-	builds acid from
43545	15971 ChEBI	L-histidine	-	assimilation
43545	15589 ChEBI	L-malate	-	assimilation
43545	17203 ChEBI	L-proline	+/-	assimilation
43545	62345 ChEBI	L-rhamnose	-	assimilation
43545	62345 ChEBI	L-rhamnose	+/-	builds acid from
43545	17115 ChEBI	L-serine	-	assimilation
43545	17266 ChEBI	L-sorbose	-	builds acid from
43545	24996 ChEBI	lactate	-	assimilation
43545	17716 ChEBI	lactose	+	builds acid from
43545	17306 ChEBI	maltose	+	builds acid from
43545		maltose hydrate	+	assimilation
43545	6731 ChEBI	melezitose	+/-	builds acid from
43545	28053 ChEBI	melibiose	+	assimilation
43545	28053 ChEBI	melibiose	+	builds acid from
43545	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
43545	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from
43545	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43545	17268 ChEBI	myo-inositol	-	assimilation
43545	17268 ChEBI	myo-inositol	-	builds acid from
43545	506227 ChEBI	N-acetylglucosamine	+	assimilation
43545	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43545	17632 ChEBI	nitrate	-	reduction
43545	17309 ChEBI	pectin	-	hydrolysis
43545	18401 ChEBI	phenylacetate	-	assimilation
43545	17272 ChEBI	propionate	-	assimilation
43545	16634 ChEBI	raffinose	+	builds acid from
43545	15963 ChEBI	ribitol	-	builds acid from
43545	17814 ChEBI	salicin	+	assimilation
43545	17814 ChEBI	salicin	+	builds acid from
43545	62983 ChEBI	sodium malonate	-	assimilation
43545	28017 ChEBI	starch	-	builds acid from
43545	28017 ChEBI	starch	+	hydrolysis
43545	9300 ChEBI	suberic acid	-	assimilation
43545	17992 ChEBI	sucrose	+	assimilation
43545	17992 ChEBI	sucrose	+	builds acid from
43545	27082 ChEBI	trehalose	+	builds acid from
43545	32528 ChEBI	turanose	+	builds acid from
43545	53424 ChEBI	tween 20	-	hydrolysis
43545	53426 ChEBI	tween 80	-	hydrolysis
43545	16199 ChEBI	urea	-	hydrolysis
43545	31011 ChEBI	valerate	-	assimilation
43545	17151 ChEBI	xylitol	-	builds acid from
43545	18222 ChEBI	xylose	+/-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43545	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43545	acid phosphatase	+	3.1.3.2
43545	alkaline phosphatase	+	3.1.3.1
43545	alpha-chymotrypsin	-	3.4.21.1
43545	alpha-fucosidase	-	3.2.1.51
43545	alpha-galactosidase	-	3.2.1.22
43545	alpha-glucosidase	+	3.2.1.20
43545	alpha-mannosidase	-	3.2.1.24
43545	arginine dihydrolase	-	3.5.3.6
43545	beta-galactosidase	-	3.2.1.23
43545	beta-glucosidase	+/-	3.2.1.21
43545	beta-glucuronidase	-	3.2.1.31
43545	cystine arylamidase	+	3.4.11.3
43545	esterase (C 4)	+/-
43545	esterase Lipase (C 8)	+/-
43545	leucine arylamidase	+	3.4.11.1
43545	lipase (C 14)	+/-
43545	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43545	naphthol-AS-BI-phosphohydrolase	+
43545	trypsin	-	3.4.21.4
43545	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43545

Fatty acid	Percentage
C15:0 anteiso	62
C14:0 iso	9.2
C15:0 iso	9.2
C17:0 anteiso	7.9
C16:0 iso	7
C16:0	1.7
C15:0	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Coast
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43545	a soil sample collected from the seashore	Jeju Island	Republic of Korea	KOR	Asia	33.498	126.452 33.498/126.452
67770	Soil from the seashore in Jeju		Republic of Korea	KOR	Asia
67771	From soil(Yongdam coastal road under a stone wall	Jeju Island)	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43545	Larkinella ripae gene for 16S ribosomal RNA, partial sequence	LC177338

GC content

@ref	GC-content (mol%)	Method
43545	53.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Larkinella roseus sp. nov., a species of the family Cytophagaceae isolated from beach soil.	Lee JB, Hong S, Lee SY, Park SJ, Park KI, Choi SG, Kim MK, Ten LN, Jung HY	J Microbiol	10.1007/s12275-018-7476-x	2018
Phylogeny	Larkinella ripae sp. nov., isolated from seashore soil.	Lee YH, Lee JJ, Lee SY, Lee DS, Kim MK, Ten LN, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002188	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43545	Yeon-Hee Lee, Jae-Jin Lee, Seung-Yeo Lee, Dae Sung Lee, Myung Kyum Kim, Leonid N. Ten, Hee-Young Jung: Larkinella ripae sp. nov., isolated from seashore soil. IJSEM 67: 3759 - 3764 2017 ( DOI 10.1099/ijsem.0.002188 , PubMed 28879840 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Larkinella ripae (KCTC 42996, JCM 31657, 15J11-11)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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