Name: Larkinella ripae 15J11-11
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140767

Type strain:

Species: Larkinella ripae

Strain Designation: 15J11-11

Culture col. no.: KCTC 42996, JCM 31657

Strain history: <- Myung Kyum, Kim, Seoul Womens Univ.

NCBI tax ID(s): 1892557 (species)

Special Collections

Section

Larkinella ripae 15J11-11 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from a soil sample collected from the seashore.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Larkinella*
	Species	**Larkinella ripae**
	Full Scientific Name (LPSN)	Larkinella ripae Lee et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43545]	Gram stain	negative

[Ref.: #43545]	Cell length	1.3-2.4 µm

[Ref.: #43545]	Cell width	0.8-1.1 µm

[Ref.: #43545]	Cell shape	rod-shaped

[Ref.: #43545]	Motility	yes

[Ref.: #43545]	Flagellum arrangement	gliding

[Ref.: #43545]	Colony size	0.5-1.5 mm
[Ref.: #43545]	Colony color	pale pink, translucent
[Ref.: #43545]	Colony shape	circular
[Ref.: #43545]	Incubation period	3 days
[Ref.: #43545]	Cultivation medium used	R2A plates

[Ref.: #43545]	Pigment production	no
[Ref.: #43545]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43545]

Culture medium

R2A plates

[Ref.: #43545]

Culture medium growth

		Temperature
[Ref.: #43545]	growth	15-30 °C
[Ref.: #43545]	optimum	25 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #43545]			optimum	7
[Ref.: #43545]			growth	6-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #43545]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43545]		NaCl		growth	0-2	%(w/v)
[Ref.: #43545]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43545]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43545]	2-dehydro-D-gluconate ChEBI	+/-	assimilation
[Ref.: #43545]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43545]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43545]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43545]	5-dehydro-D-gluconate ChEBI	+/-	assimilation
[Ref.: #43545]	5-dehydro-D-gluconate ChEBI	+/-	builds acid from
[Ref.: #43545]	acetate ChEBI	-	assimilation
[Ref.: #43545]	adipate ChEBI	-	assimilation
[Ref.: #43545]	amygdalin ChEBI	+/-	builds acid from
[Ref.: #43545]	arbutin ChEBI	+	builds acid from
[Ref.: #43545]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43545]	casein	-	hydrolysis
[Ref.: #43545]	cellobiose ChEBI	+	builds acid from
[Ref.: #43545]	chitin ChEBI	-	hydrolysis
[Ref.: #43545]	citrate ChEBI	-	assimilation
[Ref.: #43545]	D-arabinose ChEBI	+	builds acid from
[Ref.: #43545]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43545]	D-fructose ChEBI	+	builds acid from
[Ref.: #43545]	D-fucose ChEBI	+/-	builds acid from
[Ref.: #43545]	D-galactose ChEBI	+	builds acid from
[Ref.: #43545]	D-glucose ChEBI	+	assimilation
[Ref.: #43545]	D-glucose ChEBI	+	builds acid from
[Ref.: #43545]	D-lyxose ChEBI	+	builds acid from
[Ref.: #43545]	D-mannitol ChEBI	-	assimilation
[Ref.: #43545]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43545]	D-mannose ChEBI	+	assimilation
[Ref.: #43545]	D-mannose ChEBI	+	builds acid from
[Ref.: #43545]	D-ribose ChEBI	+/-	assimilation
[Ref.: #43545]	D-ribose ChEBI	+/-	builds acid from
[Ref.: #43545]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43545]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43545]	D-tagatose ChEBI	+	builds acid from
[Ref.: #43545]	D-xylose ChEBI	+	builds acid from
[Ref.: #43545]	decanoate ChEBI	-	assimilation
[Ref.: #43545]	erythritol ChEBI	-	builds acid from
[Ref.: #43545]	esculin ChEBI	+	builds acid from
[Ref.: #43545]	esculin ChEBI	+	hydrolysis
[Ref.: #43545]	galactitol ChEBI	-	builds acid from
[Ref.: #43545]	gelatin ChEBI	-	hydrolysis
[Ref.: #43545]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43545]	gluconate ChEBI	-	builds acid from
[Ref.: #43545]	gluconate ChEBI	+	assimilation
[Ref.: #43545]	glycerol ChEBI	-	builds acid from
[Ref.: #43545]	glycogen ChEBI	-	assimilation
[Ref.: #43545]	glycogen ChEBI	-	builds acid from
[Ref.: #43545]	inulin ChEBI	-	builds acid from
[Ref.: #43545]	itaconate ChEBI	-	assimilation
[Ref.: #43545]	L-alanine ChEBI	-	assimilation
[Ref.: #43545]	L-arabinose ChEBI	-	assimilation
[Ref.: #43545]	L-arabinose ChEBI	+/-	builds acid from
[Ref.: #43545]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43545]	L-fucose ChEBI	-	assimilation
[Ref.: #43545]	L-fucose ChEBI	+/-	builds acid from
[Ref.: #43545]	L-histidine ChEBI	-	assimilation
[Ref.: #43545]	L-malate ChEBI	-	assimilation
[Ref.: #43545]	L-proline ChEBI	+/-	assimilation
[Ref.: #43545]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43545]	L-rhamnose ChEBI	+/-	builds acid from
[Ref.: #43545]	L-serine ChEBI	-	assimilation
[Ref.: #43545]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43545]	lactate ChEBI	-	assimilation
[Ref.: #43545]	lactose ChEBI	+	builds acid from
[Ref.: #43545]	maltose ChEBI	+	builds acid from
[Ref.: #43545]	maltose hydrate	+	assimilation
[Ref.: #43545]	melezitose ChEBI	+/-	builds acid from
[Ref.: #43545]	melibiose ChEBI	+	assimilation
[Ref.: #43545]	melibiose ChEBI	+	builds acid from
[Ref.: #43545]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43545]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #43545]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43545]	myo-inositol ChEBI	-	assimilation
[Ref.: #43545]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43545]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43545]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43545]	nitrate ChEBI	-	reduction
[Ref.: #43545]	pectin ChEBI	-	hydrolysis
[Ref.: #43545]	phenylacetate ChEBI	-	assimilation
[Ref.: #43545]	propionate ChEBI	-	assimilation
[Ref.: #43545]	raffinose ChEBI	+	builds acid from
[Ref.: #43545]	ribitol ChEBI	-	builds acid from
[Ref.: #43545]	salicin ChEBI	+	assimilation
[Ref.: #43545]	salicin ChEBI	+	builds acid from
[Ref.: #43545]	sodium malonate ChEBI	-	assimilation
[Ref.: #43545]	starch ChEBI	-	builds acid from
[Ref.: #43545]	starch ChEBI	+	hydrolysis
[Ref.: #43545]	suberic acid ChEBI	-	assimilation
[Ref.: #43545]	sucrose ChEBI	+	assimilation
[Ref.: #43545]	sucrose ChEBI	+	builds acid from
[Ref.: #43545]	trehalose ChEBI	+	builds acid from
[Ref.: #43545]	turanose ChEBI	+	builds acid from
[Ref.: #43545]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43545]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43545]	urea ChEBI	-	hydrolysis
[Ref.: #43545]	valerate ChEBI	-	assimilation
[Ref.: #43545]	xylitol ChEBI	-	builds acid from
[Ref.: #43545]	xylose ChEBI	+/-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43545]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43545]	acid phosphatase	+	3.1.3.2
[Ref.: #43545]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43545]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43545]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43545]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43545]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43545]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43545]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43545]	beta-galactosidase	-	3.2.1.23
[Ref.: #43545]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #43545]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43545]	cystine arylamidase	+	3.4.11.3
[Ref.: #43545]	esterase (C 4)	+/-
[Ref.: #43545]	esterase Lipase (C 8)	+/-
[Ref.: #43545]	leucine arylamidase	+	3.4.11.1
[Ref.: #43545]	lipase (C 14)	+/-
[Ref.: #43545]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43545]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43545]	trypsin	-	3.4.21.4
[Ref.: #43545]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43545]

Fatty acid	Percentage
C15:0 anteiso	62
C14:0 iso	9.2
C15:0 iso	9.2
C17:0 anteiso	7.9
C16:0 iso	7
C16:0	1.7
C15:0	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43545]	Sample type/isolated from	a soil sample collected from the seashore
[Ref.: #43545]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #43545]	Country	Republic of Korea
[Ref.: #43545]	Country ISO 3 Code	KOR
[Ref.: #43545]	Continent	Asia
[Ref.: #43545]	Geographic location	33.4980°/126.4520°

[Ref.: #67770]	Sample type/isolated from	Soil from the seashore in Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil(Yongdam coastal road under a stone wall
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju Island)
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43545]	Larkinella ripae gene for 16S ribosomal RNA, partial sequence	LC177338		GenBank ENA

[Ref.: #43545]

GC-content

53.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43545]

Culture collection no.

KCTC 42996, JCM 31657

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Larkinella roseus sp. nov., a species of the family Cytophagaceae isolated from beach soil.	Lee JB, Hong S, Lee SY, Park SJ, Park KI, Choi SG, Kim MK, Ten LN, Jung HY	J Microbiol	10.1007/s12275-018-7476-x	2018	*
Phylogeny	Larkinella ripae sp. nov., isolated from seashore soil.	Lee YH, Lee JJ, Lee SY, Lee DS, Kim MK, Ten LN, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002188	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43545

Yeon-Hee Lee, Jae-Jin Lee, Seung-Yeo Lee, Dae Sung Lee, Myung Kyum Kim, Leonid N. Ten, Hee-Young Jung: Larkinella ripae sp. nov., isolated from seashore soil. IJSEM 67: 3759 - 3764 2017 ( DOI 10.1099/ijsem.0.002188 , PubMed 28879840 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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