Polynucleobacter sphagniphilus (CIP 111099, DSM 24018, MWH-Weng1-1)

Name: Polynucleobacter sphagniphilus (CIP 111099, DSM 24018, MWH-Weng1-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140723

Type strain

Strain Designation MWH-Weng1-1

Culture col. no. CIP 111099 DSM 24018 MWH-Weng1-1

NCBI tax ID(s) 1743169

Special Collections DSMZ CIP Literature strains

Links

Polynucleobacter sphagniphilus MWH-Weng1-1 is an aerobe, chemoorganotroph, rod-shaped prokaryote that forms circular colonies and was isolated from small acidic freshwater bog pond located at the edge of the Wenger Moor.

rod-shaped colony-forming aerobe chemoorganotroph genome sequence

Name and taxonomic classification

SI-ID 401906

DSM 24018,CIP 111099

@ref 20215

Last LPSN update 2025-12-16 10:03:40

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Polynucleobacter

Species Polynucleobacter sphagniphilus

Full scientific name Polynucleobacter sphagniphilus Hahn et al. 2017

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Gram stain	Confidence
43501	0.6-1 µm	0.3-0.5 µm	rod-shaped
125439				negative	99.8
123256			rod-shaped	negative

Colony morphology

@ref	Colony color	Colony shape	Medium used
43501	Colourless	circular	NSY agar plates

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
43501	NSY agar plates
64880	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
123256	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43501	positive	growth	5-31
64880	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43501	aerobe
125439	obligate aerobe	96.7

Nutrition type

43501

Typechemoorganotroph

Spore formation

@ref	Spore formation	Confidence
125439		99.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43501	NaCl	positive	growth	0-0.4 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43501	39150 ChEBI	4-oxopentanoate	+/-	assimilation
43501	30089 ChEBI	acetate	+	assimilation
43501	17750 ChEBI	betaine	-	assimilation
43501	16947 ChEBI	citrate	-	assimilation
43501	12936 ChEBI	D-galactose	-	assimilation
43501	18024 ChEBI	D-galacturonic acid	+	assimilation
43501	17634 ChEBI	D-glucose	-	assimilation
43501	62318 ChEBI	D-lyxose	-	assimilation
43501	28757 ChEBI	fructose	+/-	assimilation
43501	29806 ChEBI	fumarate	+	assimilation
43501	29805 ChEBI	glycolate	-	assimilation
43501	36655 ChEBI	glyoxylate	-	assimilation
43501	16977 ChEBI	L-alanine	+	assimilation
43501	17196 ChEBI	L-asparagine	-	assimilation
43501	29991 ChEBI	L-aspartate	-	assimilation
43501	18287 ChEBI	L-fucose	+/-	assimilation
43501	29985 ChEBI	L-glutamate	+	assimilation
43501	15971 ChEBI	L-histidine	-	assimilation
43501	15603 ChEBI	L-leucine	-	assimilation
43501	17115 ChEBI	L-serine	-	assimilation
43501	25115 ChEBI	malate	+	assimilation
43501	15792 ChEBI	malonate	+	assimilation
43501	37684 ChEBI	mannose	+/-	assimilation
43501	30623 ChEBI	oxalate	-	assimilation
43501	16452 ChEBI	oxaloacetate	-	assimilation
43501	17272 ChEBI	propionate	+/-	assimilation
43501	15361 ChEBI	pyruvate	+	assimilation
43501	30911 ChEBI	sorbitol	+/-	assimilation
43501	30031 ChEBI	succinate	+	assimilation

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Condition	#Acidic	-
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Pond (small)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
43501	small acidic freshwater bog pond located at the edge of the Wenger Moor	Salzburg	Austria	AUT	Europe
64880	freshwater, pond in ombrotrophic bog ecosystem	Wenger Moor, near lake Wallersee	Austria	AUT	Europe
123256	Environment, Freshwater from pond in ombrotrophic bag	Mondsee, Austria	Austria	AUT	Europe	2007-12-03

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64880	1	Risk group (German classification)
123256	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM195335v1 assembly for Polynucleobacter sphagniphilus MWH-Weng1-1	contig	GCA_001953355	2574179738	1743169	71.56

GC content

@ref	GC-content (mol%)	Method
43501	45.6
64880	45.6	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Polynucleobacter sphagniphilus MWH-Weng1-1
NCBI: GCA_001953355

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	yes	80.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polynucleobacter sphagniphilus sp. nov. a planktonic freshwater bacterium isolated from an acidic and humic freshwater habitat.	Hahn MW, Karbon G, Koll U, Schmidt J, Lang E	Int J Syst Evol Microbiol	10.1099/ijsem.0.002096	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43501	Martin W. Hahn, Gerlinde Karbon, Ulrike Koll, Johanna Schmidt, Elke Lang: Polynucleobacter sphagniphilus sp. nov. a planktonic freshwater bacterium isolated from an acidic and humic freshwater habitat. IJSEM 67: 3261 - 3267 2017 ( DOI 10.1099/ijsem.0.002096 , PubMed 28829016 )
#64880	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24018
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#123256	Collection of Institut Pasteur ; Curators of the CIP; CIP 111099
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Polynucleobacter sphagniphilus (CIP 111099, DSM 24018, MWH-Weng1-1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001953355

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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