Name: Silanimonas algicola M23
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140724

Type strain:

Species: Silanimonas algicola

Strain Designation: M23

Culture col. no.: KCTC 52219, JCM 31889

Strain history: <- Seong-Jun Chun(Dr. Hyung-gwan Lee), KRIBB

NCBI tax ID(s): 2029864 (species)

Section

Silanimonas algicola M23 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from laboratory culture of a bloom-forming cyanobacterium, Microcystis aeruginosa, which was isolated from the eutrophic lake Seo.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Silanimonas*
	Species	**Silanimonas algicola**
	Full Scientific Name (LPSN)	Silanimonas algicola Chun et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43502]	Gram stain	negative

[Ref.: #43502]	Cell length	0.8-1.3 µm

[Ref.: #43502]	Cell width	0.2-0.3 µm

[Ref.: #43502]	Cell shape	rod-shaped

[Ref.: #43502]	Motility	yes

[Ref.: #43502]	Flagellum arrangement	monotrichous, polar

[Ref.: #43502]	Colony size	1-2 mm
[Ref.: #43502]	Colony color	non-glossy pale yellow
[Ref.: #43502]	Colony shape	circular
[Ref.: #43502]	Incubation period	3 days
[Ref.: #43502]	Cultivation medium used	R2A agar plates

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43502]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43502]

Culture medium growth

		Temperature
[Ref.: #43502]	growth	15-42 °C
[Ref.: #43502]	optimum	25-30 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #43502]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43502]			optimum	9-10
[Ref.: #43502]			growth	7-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43502]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #43502]	NaCl		growth	0-1	%(w/v)
[Ref.: #43502]	NaCl	no	growth	1.5	%(w/v)
[Ref.: #43502]	NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43502]	adipate ChEBI	+	assimilation
[Ref.: #43502]	amygdalin ChEBI	-	builds acid from
[Ref.: #43502]	arbutin ChEBI	-	builds acid from
[Ref.: #43502]	cellobiose ChEBI	-	builds acid from
[Ref.: #43502]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43502]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43502]	D-fructose ChEBI	-	builds acid from
[Ref.: #43502]	D-fucose ChEBI	-	builds acid from
[Ref.: #43502]	D-galactose ChEBI	-	builds acid from
[Ref.: #43502]	D-glucose ChEBI	+	assimilation
[Ref.: #43502]	D-glucose ChEBI	+	builds acid from
[Ref.: #43502]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43502]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43502]	D-mannitol ChEBI	+	assimilation
[Ref.: #43502]	D-mannose ChEBI	-	builds acid from
[Ref.: #43502]	D-mannose ChEBI	+	assimilation
[Ref.: #43502]	D-ribose ChEBI	-	builds acid from
[Ref.: #43502]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43502]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43502]	D-xylose ChEBI	-	builds acid from
[Ref.: #43502]	decanoate ChEBI	-	assimilation
[Ref.: #43502]	erythritol ChEBI	-	builds acid from
[Ref.: #43502]	esculin ChEBI	+	builds acid from
[Ref.: #43502]	galactitol ChEBI	-	builds acid from
[Ref.: #43502]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43502]	glucose ChEBI	-	builds acid from
[Ref.: #43502]	glycerol ChEBI	-	builds acid from
[Ref.: #43502]	glycogen ChEBI	+	builds acid from
[Ref.: #43502]	inulin ChEBI	-	builds acid from
[Ref.: #43502]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43502]	L-arabinose ChEBI	+	assimilation
[Ref.: #43502]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43502]	L-fucose ChEBI	-	builds acid from
[Ref.: #43502]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43502]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43502]	L-xylose ChEBI	-	builds acid from
[Ref.: #43502]	lactose ChEBI	-	builds acid from
[Ref.: #43502]	malate ChEBI	+	assimilation
[Ref.: #43502]	maltose ChEBI	+	assimilation
[Ref.: #43502]	maltose ChEBI	+	builds acid from
[Ref.: #43502]	melezitose ChEBI	-	builds acid from
[Ref.: #43502]	melibiose ChEBI	-	builds acid from
[Ref.: #43502]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43502]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43502]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43502]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43502]	nitrate ChEBI	+	reduction
[Ref.: #43502]	phenylacetate ChEBI	+	assimilation
[Ref.: #43502]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43502]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43502]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43502]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43502]	raffinose ChEBI	-	builds acid from
[Ref.: #43502]	ribitol ChEBI	-	builds acid from
[Ref.: #43502]	salicin ChEBI	-	builds acid from
[Ref.: #43502]	sodium citrate ChEBI	+	assimilation
[Ref.: #43502]	starch ChEBI	+	builds acid from
[Ref.: #43502]	sucrose ChEBI	-	builds acid from
[Ref.: #43502]	trehalose ChEBI	-	builds acid from
[Ref.: #43502]	turanose ChEBI	-	builds acid from
[Ref.: #43502]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43502]	ampicillin ChEBI	yes	50	µg (disc)
[Ref.: #43502]	bacitracin ChEBI				yes	20	µg (disc)
[Ref.: #43502]	kanamycin ChEBI				yes	50	µg (disc)
[Ref.: #43502]	rifampicin ChEBI	yes	25	µg (disc)
[Ref.: #43502]	spectinomycin ChEBI				yes	20	µg (disc)
[Ref.: #43502]	streptomycin ChEBI				yes	100	µg (disc)
[Ref.: #43502]	tetracycline ChEBI				yes	40	µg (disc)
[Ref.: #43502]	vancomycin ChEBI	yes	20	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #43502]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43502]	acid phosphatase	-	3.1.3.2
[Ref.: #43502]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43502]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43502]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43502]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43502]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43502]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43502]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43502]	beta-galactosidase	-	3.2.1.23
[Ref.: #43502]	beta-glucosidase	+	3.2.1.21
[Ref.: #43502]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43502]	catalase	+	1.11.1.6
[Ref.: #43502]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43502]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43502]	esterase (C 4)	-
[Ref.: #43502]	esterase Lipase (C 8)	-
[Ref.: #43502]	leucine arylamidase	-	3.4.11.1
[Ref.: #43502]	lipase (C 14)	+/-
[Ref.: #43502]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43502]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43502]	protease	-
[Ref.: #43502]	trypsin	-	3.4.21.4
[Ref.: #43502]	urease	-	3.5.1.5
[Ref.: #43502]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43502]	Sample type/isolated from	laboratory culture of a bloom-forming cyanobacterium, Microcystis aeruginosa, which was isolated from the eutrophic lake Seo
[Ref.: #43502]	Geographic location (country and/or sea, region)	South Korea
[Ref.: #43502]	Country	Republic of Korea
[Ref.: #43502]	Country ISO 3 Code	KOR
[Ref.: #43502]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Laboratory culture of a bloom-forming cyanobacterium, Microcystis, which was isolated from a eutrophic lake in Korea
[Ref.: #67770]	Host species	Microcystis

[Ref.: #67771]	Sample type/isolated from	From fresh water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Seoho, Suwon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Lake (large)
#Host	#Microbial	#Bacteria

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY363638 (>99% sequence identity) for Silanimonas from Microbeatlas

Aquatic Samples	796
Soil Samples	69
Animal Samples	187
Plant Samples	28
Total Samples	1080

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43502]	16S rRNA gene sequence	KY363638		GenBank

[Ref.: #43502]

GC-content

69.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43502]

Culture collection no.

KCTC 52219, JCM 31889

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Silanimonas algicola sp. nov., isolated from laboratory culture of a bloom-forming cyanobacterium, Microcystis.	Chun SJ, Cui Y, Ko SR, Lee HG, Oh HM, Ahn CY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002102	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43502

Seong-Jun Chun, Yingshun Cui, So-Ra Ko, Hyung-Gwan Lee, Hee-Mock Oh, Chi-Yong Ahn: Silanimonas algicola sp. nov., isolated from laboratory culture of a bloom-forming cyanobacterium, Microcystis. IJSEM 67: 3274 - 3278 2017 ( DOI 10.1099/ijsem.0.002102 , PubMed 28829021 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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