Name: Pelagibacterium lentulum B2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140722

Type strain:

Species: Pelagibacterium lentulum

Strain Designation: B2

Culture col. no.: MCCC 1K03218, CGMCC 1.15896, KCTC 52551

NCBI tax ID(s): 2029865 (species)

Section

Pelagibacterium lentulum B2 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from culture broth of a marine microalga, Picochlorum sp.. 122.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Devosiaceae*
	Genus	*Pelagibacterium*
	Species	**Pelagibacterium lentulum**
	Full Scientific Name (LPSN)	Pelagibacterium lentulum Wang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43500]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #43500]	Cell length	1.2-2.5 µm

[Ref.: #43500]	Cell width	0.5-0.6 µm

[Ref.: #43500]	Cell shape	rod-shaped

[Ref.: #43500]	Motility	yes

[Ref.: #43500]	Flagellum arrangement	polar

[Ref.: #43500]	Colony color	Yellowish
[Ref.: #43500]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #43500]			growth	4-45 °C
[Ref.: #43500]			optimum	33 °C

[Ref.: #43500]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43500]			optimum	8
[Ref.: #43500]			growth	7-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43500]

Oxygen tolerance

aerobe

[Ref.: #43500]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43500]		NaCl		growth	0-7	%(w/v)
[Ref.: #43500]		NaCl		optimum	1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43500]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #43500]	acetate ChEBI	+	growth
[Ref.: #43500]	arabinose ChEBI	+	growth
[Ref.: #43500]	arbutin ChEBI	+	builds acid from
[Ref.: #43500]	butyrate ChEBI	+	growth
[Ref.: #43500]	casein	-	hydrolysis
[Ref.: #43500]	cellobiose ChEBI	+	growth
[Ref.: #43500]	citrate ChEBI	+	growth
[Ref.: #43500]	D-arabitol ChEBI	+	growth
[Ref.: #43500]	D-fructose ChEBI	+	growth
[Ref.: #43500]	D-galactose ChEBI	+	growth
[Ref.: #43500]	D-glucose ChEBI	+	growth
[Ref.: #43500]	D-mannitol ChEBI	+	growth
[Ref.: #43500]	D-sorbitol ChEBI	+	growth
[Ref.: #43500]	esculin ChEBI	-	hydrolysis
[Ref.: #43500]	gelatin ChEBI	-	hydrolysis
[Ref.: #43500]	gentiobiose ChEBI	+	growth
[Ref.: #43500]	glycerol ChEBI	+	growth
[Ref.: #43500]	inosine ChEBI	+	growth
[Ref.: #43500]	L-fucose ChEBI	+	growth
[Ref.: #43500]	L-histidine ChEBI	+	growth
[Ref.: #43500]	L-rhamnose ChEBI	+	growth
[Ref.: #43500]	malate ChEBI	+	growth
[Ref.: #43500]	maltose ChEBI	+	growth
[Ref.: #43500]	mannose ChEBI	+	growth
[Ref.: #43500]	melibiose ChEBI	+	growth
[Ref.: #43500]	myo-inositol ChEBI	+	growth
[Ref.: #43500]	N-acetylgalactosamine ChEBI	+	growth
[Ref.: #43500]	N-acetylglucosamine ChEBI	+	growth
[Ref.: #43500]	nitrate ChEBI	+	reduction
[Ref.: #43500]	salicin ChEBI	+	growth
[Ref.: #43500]	stachyose ChEBI	+	growth
[Ref.: #43500]	starch ChEBI	-	hydrolysis
[Ref.: #43500]	sucrose ChEBI	+	growth
[Ref.: #43500]	trehalose ChEBI	+	growth
[Ref.: #43500]	turanose ChEBI	+	growth
[Ref.: #43500]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43500]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43500]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43500]	chloramphenicol ChEBI				yes	10	µg (disc)
[Ref.: #43500]	erythromycin ChEBI	yes	10	µg (disc)
[Ref.: #43500]	fosfomycin ChEBI				yes	30	µg (disc)
[Ref.: #43500]	gentamicin ChEBI				yes	30	µg (disc)
[Ref.: #43500]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43500]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43500]	penicillin ChEBI	yes	10	Unit (disc)
[Ref.: #43500]	polymyxin b ChEBI				yes	300	Unit (disc)
[Ref.: #43500]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #43500]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43500]	vancomycin ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43500]		hydrogen sulfide ChEBI	no
[Ref.: #43500]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43500]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43500]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43500]	beta-galactosidase	+	3.2.1.23
[Ref.: #43500]	beta-glucosidase	+	3.2.1.21
[Ref.: #43500]	catalase	+	1.11.1.6
[Ref.: #43500]	cystine arylamidase	+	3.4.11.3
[Ref.: #43500]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43500]	esterase (C 4)	+
[Ref.: #43500]	esterase Lipase (C 8)	+
[Ref.: #43500]	leucine arylamidase	+	3.4.11.1
[Ref.: #43500]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43500]	trypsin	+	3.4.21.4
[Ref.: #43500]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43500]	Sample type/isolated from	culture broth of a marine microalga, Picochlorum sp.. 122
[Ref.: #43500]	Geographic location (country and/or sea, region)	Guangzhou
[Ref.: #43500]	Country	China
[Ref.: #43500]	Country ISO 3 Code	CHN
[Ref.: #43500]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Marine
#Host	#Algae	#Green algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX989461 (>99% sequence identity) for Pelagibacterium lentulum subclade from Microbeatlas

Aquatic Samples	435
Soil Samples	21
Animal Samples	66
Plant Samples	13
Total Samples	535

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43500]	16S rRNA gene sequence	KX989461		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pelagibacterium lentulum CGMCC 1.15896	GCA_014643755	contig	GenBank	2029865 tax ID	*
[Ref.: #66792]	Pelagibacterium lentulum B2	GCA_003992625	scaffold	GenBank	2029865 tax ID	*
[Ref.: #66792]	Pelagibacterium lentulum strain CGMCC 1.15896	2029865.4	wgs	PATRIC	2029865 tax ID	*
[Ref.: #66792]	Pelagibacterium lentulum B2	2881943295	draft	JGI IMG/M	2029865 tax ID	*

[Ref.: #43500]

GC-content

58.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pelagibacterium lentulum strain CGMCC 1.15896 PATRIC: 2029865.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pelagibacterium lentulum B2 NCBI: GCA_003992625.1
[Ref.: #69480]	motile	yes	85.77	no
[Ref.: #69480]	flagellated	yes	60.72	yes
[Ref.: #69480]	gram-positive	no	97.194	no
[Ref.: #69480]	anaerobic	no	98.948	yes
[Ref.: #69480]	aerobic	yes	92.376	yes
[Ref.: #69480]	halophile	no	88.758	yes
[Ref.: #69480]	spore-forming	no	96.455	yes
[Ref.: #69480]	thermophile	no	98.673	yes
[Ref.: #69480]	glucose-util	yes	89.338	no
[Ref.: #69480]	glucose-ferment	no	92.183	no

Availability in culture collections External links

[Ref.: #43500]

Culture collection no.

MCCC 1K03218, CGMCC 1.15896, KCTC 52551

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pelagibacterium lentulum sp. nov., a marine bacterium from the culture broth of Picochlorum sp. 122.	Wang G, Yu K, Wang Y, Su H, Wu H, Li T, Liang J, Huang W, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002054	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43500

Guanghua Wang, Kefu Yu, Yinghui Wang, Hongfei Su, Hualian Wu, Tao Li, Jiayuan Liang, Wen Huang, Wenzhou Xiang: Pelagibacterium lentulum sp. nov., a marine bacterium from the culture broth of Picochlorum sp. 122. IJSEM 67: 3182 - 3185 2017 ( DOI 10.1099/ijsem.0.002054 , PubMed 28840801 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Pelagibacterium lentulum strain CGMCC 1.15896

Pelagibacterium lentulum B2

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