Name: Mucilaginibacter rubeus EF23
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140679

Type strain:

Species: Mucilaginibacter rubeus

Strain Designation: EF23

Culture col. no.: CGMCC 1.15913, KCTC 52516

Strain history: <- Leni Sun, Anhui Agricultural Univ.

NCBI tax ID(s): 2027860 (species)

Section

Mucilaginibacter rubeus EF23 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from rhizosphere soil of cultivated watermelon collected from Hefei.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter rubeus**
	Full Scientific Name (LPSN)	Mucilaginibacter rubeus Wei et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43443]	Gram stain	negative

[Ref.: #43443]	Cell length	1.5-2.8 µm

[Ref.: #43443]	Cell width	0.4-0.8 µm

[Ref.: #43443]	Cell shape	rod-shaped

[Ref.: #43443]	Motility	no

[Ref.: #43443]	Colony size	3-5 mm
[Ref.: #43443]	Colony color	pale pink
[Ref.: #43443]	Colony shape	circular
[Ref.: #43443]	Incubation period	2 days
[Ref.: #43443]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43443]

Culture medium

Nutrient agar (NA)

[Ref.: #43443]

Culture medium growth

[Ref.: #43443]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43443]

Culture medium growth

[Ref.: #43443]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43443]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43443]			growth	10-37 °C
[Ref.: #67771]			growth	28-30 °C

[Ref.: #67771]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43443]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43443]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43443]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43443]		NaCl		growth	0-0.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43443]	2-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43443]	2-oxobutanoate ChEBI	-	assimilation
[Ref.: #43443]	2-oxoglutarate ChEBI	-	assimilation
[Ref.: #43443]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43443]	3-O-methyl-D-glucose ChEBI	-	assimilation
[Ref.: #43443]	4-hydroxyphenylacetic acid ChEBI	-	assimilation
[Ref.: #43443]	acetate ChEBI	-	assimilation
[Ref.: #43443]	acetoacetate ChEBI	-	assimilation
[Ref.: #43443]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43443]	alpha-lactose ChEBI	+	carbon source
[Ref.: #43443]	bromosuccinate ChEBI	-	assimilation
[Ref.: #43443]	casein	-	hydrolysis
[Ref.: #43443]	cellobiose ChEBI	+	carbon source
[Ref.: #43443]	citrate ChEBI	-	assimilation
[Ref.: #43443]	D-arabitol ChEBI	-	assimilation
[Ref.: #43443]	D-aspartate ChEBI	-	assimilation
[Ref.: #43443]	D-fructose ChEBI	+	carbon source
[Ref.: #43443]	D-fructose 6-phosphate ChEBI	-	assimilation
[Ref.: #43443]	D-fucose ChEBI	-	assimilation
[Ref.: #43443]	D-galactose ChEBI	+	carbon source
[Ref.: #43443]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #43443]	D-gluconate ChEBI	+	carbon source
[Ref.: #43443]	D-glucose 6-phosphate ChEBI	-	assimilation
[Ref.: #43443]	D-glucuronate ChEBI	+/-	carbon source
[Ref.: #43443]	D-mannitol ChEBI	-	assimilation
[Ref.: #43443]	D-mannose ChEBI	+	carbon source
[Ref.: #43443]	D-saccharate ChEBI	-	assimilation
[Ref.: #43443]	D-serine ChEBI	-	assimilation
[Ref.: #43443]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43443]	dextrin ChEBI	+	carbon source
[Ref.: #43443]	esculin ChEBI	-	hydrolysis
[Ref.: #43443]	formate ChEBI	-	assimilation
[Ref.: #43443]	galactarate ChEBI	-	assimilation
[Ref.: #43443]	gamma-aminobutyric acid ChEBI	-	assimilation
[Ref.: #43443]	gelatin ChEBI	-	hydrolysis
[Ref.: #43443]	gelatin ChEBI	+/-	carbon source
[Ref.: #43443]	gentiobiose ChEBI	+	carbon source
[Ref.: #43443]	glucose ChEBI	-	fermentation
[Ref.: #43443]	glucuronamide ChEBI	-	assimilation
[Ref.: #43443]	glycerol ChEBI	+/-	carbon source
[Ref.: #43443]	glycine-proline ChEBI	+	carbon source
[Ref.: #43443]	inosine ChEBI	-	assimilation
[Ref.: #43443]	L-alanine ChEBI	-	assimilation
[Ref.: #43443]	L-arginine ChEBI	-	assimilation
[Ref.: #43443]	L-aspartate ChEBI	+/-	carbon source
[Ref.: #43443]	L-fucose ChEBI	+	carbon source
[Ref.: #43443]	L-galactonic acid gamma-lactone ChEBI	+	carbon source
[Ref.: #43443]	L-glutamate ChEBI	+/-	carbon source
[Ref.: #43443]	L-histidine ChEBI	-	assimilation
[Ref.: #43443]	L-pyroglutamic acid ChEBI	-	assimilation
[Ref.: #43443]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43443]	L-serine ChEBI	+/-	carbon source
[Ref.: #43443]	lactate ChEBI	-	assimilation
[Ref.: #43443]	malate ChEBI	-	assimilation
[Ref.: #43443]	maltose ChEBI	+	carbon source
[Ref.: #43443]	melibiose ChEBI	+	carbon source
[Ref.: #43443]	methyl (R)-lactate ChEBI	-	assimilation
[Ref.: #43443]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #43443]	methyl pyruvate ChEBI	-	assimilation
[Ref.: #43443]	myo-inositol ChEBI	-	assimilation
[Ref.: #43443]	N-acetyl-beta-D-mannosamine ChEBI	+/-	carbon source
[Ref.: #43443]	N-acetylgalactosamine ChEBI	-	assimilation
[Ref.: #43443]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43443]	n-acetylneuraminate ChEBI	-	assimilation
[Ref.: #43443]	nitrate ChEBI	+	reduction
[Ref.: #43443]	pectin ChEBI	-	assimilation
[Ref.: #43443]	propionate ChEBI	-	assimilation
[Ref.: #43443]	quinate ChEBI	-	assimilation
[Ref.: #43443]	raffinose ChEBI	+	carbon source
[Ref.: #43443]	salicin ChEBI	+	carbon source
[Ref.: #43443]	stachyose ChEBI	+	carbon source
[Ref.: #43443]	starch ChEBI	-	hydrolysis
[Ref.: #43443]	sucrose ChEBI	+	carbon source
[Ref.: #43443]	trehalose ChEBI	+	carbon source
[Ref.: #43443]	turanose ChEBI	+	carbon source
[Ref.: #43443]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43443]	tween 40 ChEBI	-	assimilation
[Ref.: #43443]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #43443]	aztreonam ChEBI		yes
[Ref.: #43443]	d-serine ChEBI	yes
[Ref.: #43443]	fusidate ChEBI	yes
[Ref.: #43443]	guanidinium chloride ChEBI	yes
[Ref.: #43443]	lincomycin ChEBI	yes
[Ref.: #43443]	lithium chloride ChEBI	yes
[Ref.: #43443]	minocycline ChEBI	yes
[Ref.: #43443]	nalidixic acid ChEBI		yes
[Ref.: #43443]	niaproof ChEBI	yes
[Ref.: #43443]	potassium tellurite ChEBI	yes
[Ref.: #43443]	rifamycin sv ChEBI		yes
[Ref.: #43443]	sodium bromate ChEBI	yes
[Ref.: #43443]	sodium butyrate ChEBI	yes
[Ref.: #43443]	tetrazolium blue ChEBI		yes
[Ref.: #43443]	tetrazolium violet ChEBI	yes
[Ref.: #43443]	troleandomycin ChEBI		yes
[Ref.: #43443]	vancomycin ChEBI		yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43443]	acetoin ChEBI	no
[Ref.: #43443]	hydrogen sulfide ChEBI	no
[Ref.: #43443]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43443]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43443]	acid phosphatase	+	3.1.3.2
[Ref.: #43443]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43443]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43443]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43443]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43443]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43443]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43443]	beta-galactosidase	+	3.2.1.23
[Ref.: #43443]	beta-glucosidase	+	3.2.1.21
[Ref.: #43443]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43443]	catalase	+	1.11.1.6
[Ref.: #43443]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43443]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43443]	esterase (C 4)	+/-
[Ref.: #43443]	esterase Lipase (C 8)	+/-
[Ref.: #43443]	leucine arylamidase	+	3.4.11.1
[Ref.: #43443]	lipase (C 14)	-
[Ref.: #43443]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43443]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43443]	trypsin	+/-	3.4.21.4
[Ref.: #43443]	urease	-	3.5.1.5
[Ref.: #43443]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43443]	Sample type/isolated from	rhizosphere soil of cultivated watermelon (Citrullus lanatus) collected from Hefei
[Ref.: #43443]	Geographic location (country and/or sea, region)	Hefei
[Ref.: #43443]	Country	China
[Ref.: #43443]	Country ISO 3 Code	CHN
[Ref.: #43443]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Hefei, Anhui
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX792140 (>99% sequence identity) for Mucilaginibacter from Microbeatlas

Aquatic Samples	27
Soil Samples	325
Animal Samples	44
Plant Samples	936
Total Samples	1332

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43443]	16S rRNA gene sequence	KX792140		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mucilaginibacter rubeus CGMCC 1.15913	GCA_014643835	scaffold	GenBank	2027860 tax ID	*
[Ref.: #66792]	Mucilaginibacter rubeus strain CGMCC 1.15913	2027860.7	wgs	PATRIC	2027860 tax ID	*

[Ref.: #43443]

GC-content

43.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mucilaginibacter rubeus CGMCC 1.15913 NCBI: GCA_014643835.1
[Ref.: #69480]	flagellated	no	96.918	no
[Ref.: #69480]	gram-positive	no	96.794	no
[Ref.: #69480]	anaerobic	no	99.519	no
[Ref.: #69480]	aerobic	yes	86.866	yes
[Ref.: #69480]	halophile	no	97.512	no
[Ref.: #69480]	spore-forming	no	92.514	yes
[Ref.: #69480]	glucose-util	yes	88.312	yes
[Ref.: #69480]	thermophile	no	98.788	yes
[Ref.: #69480]	motile	no	90.302	yes
[Ref.: #69480]	glucose-ferment	no	90.141	yes

Availability in culture collections External links

[Ref.: #43443]

Culture collection no.

CGMCC 1.15913, KCTC 52516

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter rubeus sp. nov., isolated from rhizosphere soil.	Wei JC, Sun LN, Yuan ZX, Hou XT, Yang ED, Cao YY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002101	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43443

Jie-Chao Wei, Le-Ni Sun, Zhuo-Xin Yuan, Xue-Ting Hou, En-Dong Yang, Yuan-Yuan Cao: Mucilaginibacter rubeus sp. nov., isolated from rhizosphere soil. IJSEM 67: 3099 - 3104 2017 ( DOI 10.1099/ijsem.0.002101 , PubMed 28820117 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Mucilaginibacter rubeus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Mucilaginibacter rubeus CGMCC 1.15913

Change proposal

Change proposal