Zunongwangia endophytica (CECT 9128, LMG 29517, CPA58)

Name: Zunongwangia endophytica (CECT 9128, LMG 29517, CPA58)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140678

Type strain

Strain Designation CPA58

Culture col. no. CECT 9128 LMG 29517 CPA58 UCCCB46

NCBI tax ID(s) 1808945

Special Collections Literature strains UCCCB

History Fidalgo, C. University of Aveiro

Links

Zunongwangia endophytica CPA58 is a microaerophile, Gram-negative, rod-shaped bacterium that was isolated from surface-sterilized aboveground tissues of the halophyte Halimione portulacoides, collected from a salt marsh in Ria de Aveiro.

Gram-negative rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 272322

LMG 29517,CECT 9128

@ref 20215

Last LPSN update 2026-02-09 11:33:41

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Zunongwangia

Species Zunongwangia endophytica

Full scientific name Zunongwangia endophytica Fidalgo et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43442	negative	1.38-3.4 µm	0.55-1.13 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Incubation period	Medium used
43442	0.6-2.2 mm	creamy-yellow	2 days	Marine agar

Pigmentation

@ref	Production	Name
43442		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
43442	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
43442	positive	growth	4-30
43442	positive	optimum	26
67772	positive	minimum	4
67772	positive	optimum	26
67772	positive	maximum	30

Culture pH

@ref	Ability	Type	PH	PH range
67772	positive	maximum	9.0
67772	positive	minimum	6.0
43442	positive	optimum	6-8
67772	positive	optimum	6.0-8.0
43442	positive	growth	6-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

43442

Oxygen tolerancemicroaerophile

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43442	NaCl	positive	growth	2-10 %(w/v)
43442	NaCl	positive	optimum	2-3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43442	17128 ChEBI	adipate	-	assimilation
43442	27613 ChEBI	amygdalin	-	builds acid from
43442	18305 ChEBI	arbutin	-	builds acid from
43442	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43442		casein	-	hydrolysis
43442	17057 ChEBI	cellobiose	-	builds acid from
43442	16947 ChEBI	citrate	-	assimilation
43442	17108 ChEBI	D-arabinose	-	builds acid from
43442	18333 ChEBI	D-arabitol	-	builds acid from
43442	15824 ChEBI	D-fructose	-	builds acid from
43442	28847 ChEBI	D-fucose	-	builds acid from
43442	12936 ChEBI	D-galactose	-	builds acid from
43442	17634 ChEBI	D-glucose	-	assimilation
43442	17634 ChEBI	D-glucose	-	builds acid from
43442	17634 ChEBI	D-glucose	-	fermentation
43442	62318 ChEBI	D-lyxose	-	builds acid from
43442	16899 ChEBI	D-mannitol	-	assimilation
43442	16899 ChEBI	D-mannitol	-	builds acid from
43442	16024 ChEBI	D-mannose	-	assimilation
43442	16024 ChEBI	D-mannose	-	builds acid from
43442	16988 ChEBI	D-ribose	-	builds acid from
43442	17924 ChEBI	D-sorbitol	-	builds acid from
43442	16443 ChEBI	D-tagatose	-	builds acid from
43442	65327 ChEBI	D-xylose	-	builds acid from
43442	27689 ChEBI	decanoate	-	assimilation
43442	16991 ChEBI	dna	-	hydrolysis
43442	17113 ChEBI	erythritol	-	builds acid from
43442	4853 ChEBI	esculin	+	hydrolysis
43442		esculin ferric citrate	+	builds acid from
43442	16813 ChEBI	galactitol	-	builds acid from
43442	5291 ChEBI	gelatin	+	hydrolysis
43442	28066 ChEBI	gentiobiose	-	builds acid from
43442	17754 ChEBI	glycerol	-	builds acid from
43442	28087 ChEBI	glycogen	-	builds acid from
43442	15443 ChEBI	inulin	-	builds acid from
43442	30849 ChEBI	L-arabinose	-	assimilation
43442	30849 ChEBI	L-arabinose	-	builds acid from
43442	18403 ChEBI	L-arabitol	-	builds acid from
43442	18287 ChEBI	L-fucose	-	builds acid from
43442	62345 ChEBI	L-rhamnose	-	builds acid from
43442	17266 ChEBI	L-sorbose	-	builds acid from
43442	65328 ChEBI	L-xylose	-	builds acid from
43442	17716 ChEBI	lactose	-	builds acid from
43442	25115 ChEBI	malate	-	assimilation
43442	17306 ChEBI	maltose	-	assimilation
43442	17306 ChEBI	maltose	-	builds acid from
43442	6731 ChEBI	melezitose	-	builds acid from
43442	28053 ChEBI	melibiose	-	builds acid from
43442	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43442	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43442	37657 ChEBI	methyl D-glucoside	-	builds acid from
43442	17268 ChEBI	myo-inositol	-	builds acid from
43442	506227 ChEBI	N-acetylglucosamine	-	assimilation
43442	506227 ChEBI	N-acetylglucosamine	-	builds acid from
43442	17632 ChEBI	nitrate	-	reduction
43442		O-nitrophenyl-beta-D-galactopyranosid	+	hydrolysis
43442	18401 ChEBI	phenylacetate	-	assimilation
43442		potassium 2-dehydro-D-gluconate	-	builds acid from
43442		potassium 5-dehydro-D-gluconate	-	builds acid from
43442	32032 ChEBI	potassium gluconate	-	assimilation
43442	32032 ChEBI	potassium gluconate	-	builds acid from
43442	16634 ChEBI	raffinose	-	builds acid from
43442	15963 ChEBI	ribitol	-	builds acid from
43442	17814 ChEBI	salicin	-	builds acid from
43442	53258 ChEBI	sodium citrate	-	assimilation
43442	28017 ChEBI	starch	-	builds acid from
43442	28017 ChEBI	starch	-	hydrolysis
43442	17992 ChEBI	sucrose	-	builds acid from
43442	27082 ChEBI	trehalose	-	builds acid from
43442	32528 ChEBI	turanose	-	builds acid from
43442	53424 ChEBI	tween 20	+	hydrolysis
43442	37166 ChEBI	xylan	+	hydrolysis
43442	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43442	16136 ChEBI	hydrogen sulfide
43442	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43442	acid phosphatase	+	3.1.3.2
43442	alkaline phosphatase	+	3.1.3.1
43442	alpha-chymotrypsin	+/-	3.4.21.1
43442	alpha-fucosidase	-	3.2.1.51
43442	alpha-galactosidase	+/-	3.2.1.22
43442	alpha-glucosidase	+	3.2.1.20
43442	alpha-mannosidase	-	3.2.1.24
43442	arginine dihydrolase	-	3.5.3.6
43442	beta-galactosidase	+/-	3.2.1.23
43442	beta-galactosidase	+	3.2.1.23
43442	beta-glucosidase	+	3.2.1.21
43442	beta-glucuronidase	-	3.2.1.31
43442	catalase	+	1.11.1.6
43442	cystine arylamidase	+/-	3.4.11.3
43442	cytochrome oxidase	-	1.9.3.1
43442	esterase (C 4)	+
43442	esterase Lipase (C 8)	+
43442	leucine arylamidase	+	3.4.11.1
43442	lipase (C 14)	-
43442	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43442	naphthol-AS-BI-phosphohydrolase	+
43442	protease	+
43442	trypsin	+	3.4.21.4
43442	urease	-	3.5.1.5
43442	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43442

Fatty acid	Percentage	ECL
C15:0 iso	20.8
C16:17c / iso-C15:02-OH	13.5
C17:0 iso 3OH	11.7
C15:0 anteiso	8.4
Unknown ECL 13.563	7.6	13563
C15:1 iso G	7.4
C15:0	6.6
iso-C17:9c / 10-methyl-C16:0	3.8
C15:0 iso 3OH	2.8
C15:0 2OH	2
C17:1ω6c	1.9
C17:0 2OH	1.6
C16:0 iso 3OH	1.4
C15:1ω6c	1.4
C17:1 anteiso ω9c	1.4
C16:0 iso	1.3
Unknown ECL 15.938	1.2
Unknown ECL 13.652	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Salt marsh
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43442	surface-sterilized aboveground tissues of the halophyte Halimione portulacoides, collected from a salt marsh in Ria de Aveiro		Ria de Aveiro	Portugal	PRT	Europe
67772	Surface-sterilized aboveground tissues of the halophyte Halimione portulacoides, collected from a salt marsh	2012	Aveiro, Aveiro	Portugal	PRT	Europe	40.6582	-8.68905 40.6582/-8.68905

Taxonmaps

69479

Global distribution of 16S sequence KY310594 (>99% sequence identity) for Zunongwangia endophytica subclade from Microbeatlas

Aquatic Samples	56
Soil Samples	4
Animal Samples	2
Plant Samples	7
Total Samples	69

Interaction and safety

Risk assessment

67772

Biosafety level1

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3040950v1 assembly for Zunongwangia endophytica CECT 9128	contig	GCA_030409505	1808945.4	8046521685	1808945	77.16
124043	ASM4265020v1 assembly for Zunongwangia endophytica CECT 9128	contig	GCA_042650205			1808945	66.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43442	Zunongwangia endophytica strain CPA58 16S ribosomal RNA gene, partial sequence	KY310594
124043	Zunongwangia endophytica strain CECT 9128 16S ribosomal RNA gene, partial sequence.	MT760316	1320		1808945

GC content

@ref	GC-content (mol%)	Method
43442	35.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zunongwangia endophytica sp. nov., an endophyte isolated from the salt marsh plant, Halimione portulacoides, and emended description of the genus Zunongwangia.	Fidalgo C, Martins R, Proenca DN, Morais PV, Alves A, Henriques I	Int J Syst Evol Microbiol	10.1099/ijsem.0.002069	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43442	Catia Fidalgo, Ricardo Martins, Diogo Neves Proença, Paula V. Morais, Artur Alves, Isabel Henriques: Zunongwangia endophytica sp. nov., an endophyte isolated from the salt marsh plant, Halimione portulacoides, and emended description of the genus Zunongwangia. IJSEM 67: 3004 - 3009 2017 ( DOI 10.1099/ijsem.0.002069 , PubMed 28853694 )
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Zunongwangia endophytica (CECT 9128, LMG 29517, CPA58)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030409505

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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