Name: Zunongwangia endophytica CPA58
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140678

Type strain:

Species: Zunongwangia endophytica

Strain Designation: CPA58

Culture col. no.: CECT 9128, LMG 29517, UCCCB46

Strain history: Fidalgo, C. University of Aveiro

NCBI tax ID(s): 1808945 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Zunongwangia endophytica CPA58 is a microaerophile, Gram-negative, rod-shaped bacterium that was isolated from surface-sterilized aboveground tissues of the halophyte Halimione portulacoides, collected from a salt marsh in Ria de Aveiro.

Gram-negative
rod-shaped
microaerophile
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Zunongwangia*
	Species	**Zunongwangia endophytica**
	Full Scientific Name (LPSN)	Zunongwangia endophytica Fidalgo et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43442]	Gram stain	negative

[Ref.: #43442]	Cell length	1.38-3.4 µm

[Ref.: #43442]	Cell width	0.55-1.13 µm

[Ref.: #43442]	Cell shape	rod-shaped

[Ref.: #43442]	Motility	no

[Ref.: #43442]	Colony size	0.6-2.2 mm
[Ref.: #43442]	Colony color	creamy-yellow
[Ref.: #43442]	Incubation period	2 days
[Ref.: #43442]	Cultivation medium used	Marine agar

[Ref.: #43442]	Pigment production	no
[Ref.: #43442]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43442]

Culture medium

Marine agar (MA)

[Ref.: #43442]

Culture medium growth

		Temperature
[Ref.: #43442]	growth	4-30 °C
[Ref.: #43442]	optimum	26 °C
[Ref.: #67772]	minimum	4 °C
[Ref.: #67772]	optimum	26 °C
[Ref.: #67772]	maximum	30 °C

		pH
[Ref.: #67772]	maximum	9.0
[Ref.: #67772]	minimum	6.0
[Ref.: #43442]	optimum	6-8
[Ref.: #67772]	optimum	6.0-8.0
[Ref.: #43442]	growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43442]

Oxygen tolerance

microaerophile

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43442]		NaCl		growth	2-10	%(w/v)
[Ref.: #43442]		NaCl		optimum	2-3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43442]	adipate ChEBI	-	assimilation
[Ref.: #43442]	amygdalin ChEBI	-	builds acid from
[Ref.: #43442]	arbutin ChEBI	-	builds acid from
[Ref.: #43442]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43442]	casein	-	hydrolysis
[Ref.: #43442]	cellobiose ChEBI	-	builds acid from
[Ref.: #43442]	citrate ChEBI	-	assimilation
[Ref.: #43442]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43442]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43442]	D-fructose ChEBI	-	builds acid from
[Ref.: #43442]	D-fucose ChEBI	-	builds acid from
[Ref.: #43442]	D-galactose ChEBI	-	builds acid from
[Ref.: #43442]	D-glucose ChEBI	-	assimilation
[Ref.: #43442]	D-glucose ChEBI	-	builds acid from
[Ref.: #43442]	D-glucose ChEBI	-	fermentation
[Ref.: #43442]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43442]	D-mannitol ChEBI	-	assimilation
[Ref.: #43442]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43442]	D-mannose ChEBI	-	assimilation
[Ref.: #43442]	D-mannose ChEBI	-	builds acid from
[Ref.: #43442]	D-ribose ChEBI	-	builds acid from
[Ref.: #43442]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43442]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43442]	D-xylose ChEBI	-	builds acid from
[Ref.: #43442]	decanoate ChEBI	-	assimilation
[Ref.: #43442]	dna ChEBI	-	hydrolysis
[Ref.: #43442]	erythritol ChEBI	-	builds acid from
[Ref.: #43442]	esculin ChEBI	+	hydrolysis
[Ref.: #43442]	esculin ferric citrate	+	builds acid from
[Ref.: #43442]	galactitol ChEBI	-	builds acid from
[Ref.: #43442]	gelatin ChEBI	+	hydrolysis
[Ref.: #43442]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43442]	glycerol ChEBI	-	builds acid from
[Ref.: #43442]	glycogen ChEBI	-	builds acid from
[Ref.: #43442]	inulin ChEBI	-	builds acid from
[Ref.: #43442]	L-arabinose ChEBI	-	assimilation
[Ref.: #43442]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43442]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43442]	L-fucose ChEBI	-	builds acid from
[Ref.: #43442]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43442]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43442]	L-xylose ChEBI	-	builds acid from
[Ref.: #43442]	lactose ChEBI	-	builds acid from
[Ref.: #43442]	malate ChEBI	-	assimilation
[Ref.: #43442]	maltose ChEBI	-	assimilation
[Ref.: #43442]	maltose ChEBI	-	builds acid from
[Ref.: #43442]	melezitose ChEBI	-	builds acid from
[Ref.: #43442]	melibiose ChEBI	-	builds acid from
[Ref.: #43442]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43442]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43442]	methyl D-glucoside ChEBI	-	builds acid from
[Ref.: #43442]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43442]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43442]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43442]	nitrate ChEBI	-	reduction
[Ref.: #43442]	O-nitrophenyl-beta-D-galactopyranosid	+	hydrolysis
[Ref.: #43442]	phenylacetate ChEBI	-	assimilation
[Ref.: #43442]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43442]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #43442]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43442]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43442]	raffinose ChEBI	-	builds acid from
[Ref.: #43442]	ribitol ChEBI	-	builds acid from
[Ref.: #43442]	salicin ChEBI	-	builds acid from
[Ref.: #43442]	sodium citrate ChEBI	-	assimilation
[Ref.: #43442]	starch ChEBI	-	builds acid from
[Ref.: #43442]	starch ChEBI	-	hydrolysis
[Ref.: #43442]	sucrose ChEBI	-	builds acid from
[Ref.: #43442]	trehalose ChEBI	-	builds acid from
[Ref.: #43442]	turanose ChEBI	-	builds acid from
[Ref.: #43442]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43442]	xylan ChEBI	+	hydrolysis
[Ref.: #43442]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43442]		hydrogen sulfide ChEBI	no
[Ref.: #43442]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43442]	acid phosphatase	+	3.1.3.2
[Ref.: #43442]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43442]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #43442]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43442]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #43442]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43442]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43442]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43442]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #43442]	beta-galactosidase	+	3.2.1.23
[Ref.: #43442]	beta-glucosidase	+	3.2.1.21
[Ref.: #43442]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43442]	catalase	+	1.11.1.6
[Ref.: #43442]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43442]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43442]	esterase (C 4)	+
[Ref.: #43442]	esterase Lipase (C 8)	+
[Ref.: #43442]	leucine arylamidase	+	3.4.11.1
[Ref.: #43442]	lipase (C 14)	-
[Ref.: #43442]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43442]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43442]	protease	+
[Ref.: #43442]	trypsin	+	3.4.21.4
[Ref.: #43442]	urease	-	3.5.1.5
[Ref.: #43442]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43442]

Fatty acid	Percentage	ECL
C15:0 iso	20.8
C16:17c / iso-C15:02-OH	13.5
C17:0 iso 3OH	11.7
C15:0 anteiso	8.4
Unknown ECL 13.563	7.6	13563
C15:1 iso G	7.4
C15:0	6.6
iso-C17:9c / 10-methyl-C16:0	3.8
C15:0 iso 3OH	2.8
C15:0 2OH	2
C17:1ω6c	1.9
C17:0 2OH	1.6
C16:0 iso 3OH	1.4
C15:1ω6c	1.4
C17:1 anteiso ω9c	1.4
C16:0 iso	1.3
Unknown ECL 15.938	1.2
Unknown ECL 13.652	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43442]	Sample type/isolated from	surface-sterilized aboveground tissues of the halophyte Halimione portulacoides, collected from a salt marsh in Ria de Aveiro
[Ref.: #43442]	Geographic location (country and/or sea, region)	Ria de Aveiro
[Ref.: #43442]	Country	Portugal
[Ref.: #43442]	Country ISO 3 Code	PRT
[Ref.: #43442]	Continent	Europe

[Ref.: #67772]	Sample type/isolated from	Surface-sterilized aboveground tissues of the halophyte Halimione portulacoides, collected from a salt marsh
[Ref.: #67772]	Sampling date	2012
[Ref.: #67772]	Geographic location (country and/or sea, region)	Aveiro, Aveiro
[Ref.: #67772]	Country	Portugal
[Ref.: #67772]	Country ISO 3 Code	PRT
[Ref.: #67772]	Continent	Europe
[Ref.: #67772]	Geographic location	40.6582°/-8.6890°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Salt marsh
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY310594 (>99% sequence identity) for Zunongwangia endophytica subclade from Microbeatlas

Aquatic Samples	56
Soil Samples	4
Animal Samples	2
Plant Samples	7
Total Samples	69

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67772]

Biosafety level

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43442]	Zunongwangia endophytica strain CPA58 16S ribosomal RNA gene, partial sequence	KY310594		GenBank ENA

[Ref.: #43442]

GC-content

35.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43442]

Culture collection no.

CECT 9128, LMG 29517, UCCCB46

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zunongwangia endophytica sp. nov., an endophyte isolated from the salt marsh plant, Halimione portulacoides, and emended description of the genus Zunongwangia.	Fidalgo C, Martins R, Proenca DN, Morais PV, Alves A, Henriques I	Int J Syst Evol Microbiol	10.1099/ijsem.0.002069	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43442

Catia Fidalgo, Ricardo Martins, Diogo Neves Proença, Paula V. Morais, Artur Alves, Isabel Henriques: Zunongwangia endophytica sp. nov., an endophyte isolated from the salt marsh plant, Halimione portulacoides, and emended description of the genus Zunongwangia. IJSEM 67: 3004 - 3009 2017 ( DOI 10.1099/ijsem.0.002069 , PubMed 28853694 )

#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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