Name: Shewanella gelidimarina DSM 12621
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14067

Type strain:

Species: Shewanella gelidimarina

Culture col. no.: DSM 12621, ACAM 456, CIP 105516

Strain history: <- ACAM <- J. P. Bowman <- D. Nichols

NCBI tax ID(s): 56813 (species)

SI-ID 11994

LMG 18395, LMG 18458, LMG 18918, LMG 19476, ATCC 700752, DSM 12621, CIP 105516, CECT 5097

Section

Shewanella gelidimarina DSM 12621 is a psychrophilic bacterium that was isolated from sea ice core.

psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella gelidimarina**
	Full Scientific Name (LPSN)	Shewanella gelidimarina Bowman et al. 1997

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42114]

Culture medium

Marine agar (MA)

[Ref.: #42114]

Culture medium growth

[Ref.: #42114]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42114]			growth	18 °C

[Ref.: #42114]

Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4773]	Sample type/isolated from	sea ice core
[Ref.: #4773]	Geographic location (country and/or sea, region)	Ellis Fjord, 68°35'S, 78°02'E
[Ref.: #4773]	Continent	Australia and Oceania
[Ref.: #4773]	Geographic location	-68.5833°/78.0333°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Ice
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U85907 (>99% sequence identity) for Shewanella from Microbeatlas

Aquatic Samples	57
Soil Samples
Animal Samples	33
Plant Samples
Total Samples	90

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4773]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Shewanella gelidimarina ACAM456 16S ribosomal RNA gene, partial sequence	U85907	1507	ENA	56813 tax ID	*

Availability in culture collections External links

[Ref.: #4773]

Culture collection no.

DSM 12621, ACAM 456, CIP 105516

[Ref.: #83236]

SI-ID 11994

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5 omega 3) and grow anaerobically by dissimilatory Fe(III) reduction.	Bowman JP, McCammon SA, Nichols DS, Skerratt JH, Rea SM, Nichols PD, McMeekin TA	Int J Syst Bacteriol	10.1099/00207713-47-4-1040	1997	*
Metabolism	Polyunsaturated fatty acids in the psychrophilic bacterium Shewanella gelidimarina ACAM 456T: molecular species analysis of major phospholipids and biosynthesis of eicosapentaenoic acid.	Nichols DS, Nichols PD, Russell NJ, Davies NW, McMeekin TA	Biochim Biophys Acta	10.1016/s0005-2760(97)00068-4	1997	*

References

#4773

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12621

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42114 ; Curators of the CIP;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83236

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID11994.1 )

* These data were automatically processed and therefore are not curated

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