Strain identifier
BacDive ID: 14067
Type strain: 
Species: Shewanella gelidimarina
Strain history: <- ACAM <- J. P. Bowman <- D. Nichols
NCBI tax ID(s): 56813 (species)
version 8.1 (current version)
General
@ref: 4773
BacDive-ID: 14067
DSM-Number: 12621
keywords: 16S sequence, Bacteria, psychrophilic
description: Shewanella gelidimarina DSM 12621 is a psychrophilic bacterium that was isolated from sea ice core.
NCBI tax id
- NCBI tax id: 56813
- Matching level: species
strain history
- @ref: 4773
- history: <- ACAM <- J. P. Bowman <- D. Nichols
doi: 10.13145/bacdive14067.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella gelidimarina
- full scientific name: Shewanella gelidimarina Bowman et al. 1997
@ref: 4773
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella gelidimarina
full scientific name: Shewanella gelidimarina Bowman et al. 1997
type strain: yes
Culture and growth conditions
culture medium
- @ref: 42114
- name: Marine agar (MA)
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
culture temp
- @ref: 42114
- growth: positive
- type: growth
- temperature: 18
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 4773
- sample type: sea ice core
- geographic location: Ellis Fjord, 68°35'S, 78°02'E
- continent: Australia and Oceania
- latitude: -68.5833
- longitude: 78.0333
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Ice |
| #Environmental | #Aquatic | #Marine |
taxonmaps
- @ref: 69479
- File name: preview.99_29176.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_759;97_997;98_14905;99_29176&stattab=map
- Last taxonomy: Shewanella
- 16S sequence: U85907
- Sequence Identity:
- Total samples: 90
- aquatic counts: 57
- animal counts: 33
Safety information
risk assessment
- @ref: 4773
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Shewanella gelidimarina ACAM456 16S ribosomal RNA gene, partial sequence
- accession: U85907
- length: 1507
- database: ena
- NCBI tax ID: 56813
External links
@ref: 4773
culture collection no.: DSM 12621, ACAM 456, CIP 105516
straininfo link
- @ref: 83236
- straininfo: 11994
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 9295160 | Polyunsaturated fatty acids in the psychrophilic bacterium Shewanella gelidimarina ACAM 456T: molecular species analysis of major phospholipids and biosynthesis of eicosapentaenoic acid. | Nichols DS, Nichols PD, Russell NJ, Davies NW, McMeekin TA | Biochim Biophys Acta | 10.1016/s0005-2760(97)00068-4 | 1997 | Carbon Radioisotopes, Eicosapentaenoic Acid/*analysis, Fatty Acids/analysis, Fatty Acids, Unsaturated/*biosynthesis, Gram-Negative Facultatively Anaerobic Rods/growth & development/*metabolism, Mass Spectrometry, Phospholipids/*analysis/isolation & purification, Serine, Sodium Acetate, Temperature | Enzymology |
| Phylogeny | 9336903 | Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5 omega 3) and grow anaerobically by dissimilatory Fe(III) reduction. | Bowman JP, McCammon SA, Nichols DS, Skerratt JH, Rea SM, Nichols PD, McMeekin TA | Int J Syst Bacteriol | 10.1099/00207713-47-4-1040 | 1997 | Antarctic Regions, Base Composition, DNA, Bacterial/*analysis, Eicosapentaenoic Acid/biosynthesis, Fatty Acids/analysis, Gram-Negative Facultatively Anaerobic Rods/chemistry/*classification/*genetics/metabolism, Iron/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/*analysis, Water Microbiology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4773 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12621) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12621 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 42114 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17544 | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 83236 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID11994.1 | StrainInfo: A central database for resolving microbial strain identifiers |