Shewanella baltica DSM 9439 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from oil-brine.
Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Alteromonadales |
| Family Shewanellaceae |
| Genus Shewanella |
| Species Shewanella baltica |
| Full scientific name Shewanella baltica Ziemke et al. 1998 |
| BacDive ID | Other strains from Shewanella baltica (5) | Type strain |
|---|---|---|
| 14065 | S. baltica OS155, DSM 16281 | |
| 134815 | S. baltica CIP 69.31 | |
| 135744 | S. baltica OS155, CIP 108313 | |
| 135775 | S. baltica CIP 69.34, NCIMB 1734 | |
| 137144 | S. baltica CIP 69.29, NCIMB 1735 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3572 | OXOID NUTRIENT BROTH (DSMZ Medium 948) | Medium recipe at MediaDive | Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water | ||
| 40255 | Marine agar (MA) | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |||
| 116723 | CIP Medium 13 | Medium recipe at CIP | |||
| 3572 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | Medium recipe at MediaDive | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 97.8 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 116723 | 16947 ChEBI | citrate | + | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68374 | 18024 ChEBI | D-galacturonic acid | - | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | - | builds acid from | from API ID32E |
| 68371 | 17634 ChEBI | D-glucose | - | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68374 | 16899 ChEBI | D-mannitol | - | builds acid from | from API ID32E |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 116723 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68374 | 30849 ChEBI | L-arabinose | - | builds acid from | from API ID32E |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68374 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API ID32E |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68374 | 25094 ChEBI | lysine | - | degradation | from API ID32E |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68374 | 17306 ChEBI | maltose | - | builds acid from | from API ID32E |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 116723 | 17632 ChEBI | nitrate | + | reduction | |
| 116723 | 17632 ChEBI | nitrate | + | respiration | |
| 116723 | 16301 ChEBI | nitrite | + | reduction | |
| 68374 | 18257 ChEBI | ornithine | - | degradation | from API ID32E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68374 | Potassium 5-ketogluconate | - | builds acid from | from API ID32E | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68374 | 30911 ChEBI | sorbitol | - | builds acid from | from API ID32E |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68374 | 17992 ChEBI | sucrose | - | builds acid from | from API ID32E |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68374 | 27082 ChEBI | trehalose | - | builds acid from | from API ID32E |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68374 | 27897 ChEBI | tryptophan | - | energy source | from API ID32E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 116723 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 116723 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68374 | alpha-galactosidase | - | 3.2.1.22 | from API ID32E |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 116723 | amylase | - | ||
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 116723 | beta-galactosidase | - | 3.2.1.23 | |
| 68374 | beta-galactosidase | - | 3.2.1.23 | from API ID32E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68374 | beta-glucosidase | - | 3.2.1.21 | from API ID32E |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68374 | beta-glucuronidase | - | 3.2.1.31 | from API ID32E |
| 116723 | caseinase | + | 3.4.21.50 | |
| 116723 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 116723 | gelatinase | +/- | ||
| 68374 | L-aspartate arylamidase | + | 3.4.11.21 | from API ID32E |
| 116723 | lecithinase | + | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 116723 | lipase | + | ||
| 68374 | lipase | - | from API ID32E | |
| 116723 | lysine decarboxylase | - | 4.1.1.18 | |
| 68374 | lysine decarboxylase | - | 4.1.1.18 | from API ID32E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68374 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API ID32E |
| 116723 | ornithine decarboxylase | + | 4.1.1.17 | |
| 68374 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32E |
| 116723 | oxidase | + | ||
| 116723 | protease | + | ||
| 116723 | tryptophan deaminase | - | ||
| 116723 | tween esterase | + | ||
| 116723 | urease | - | 3.5.1.5 | |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116723 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54761 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
Global distribution of 16S sequence AJ000214 (>99% sequence identity) for Shewanella from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | 50884_G01 assembly for Shewanella baltica NCTC10735 | contig | 62322 | 78.81 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 97.80 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 81.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.10 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 94.16 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 89.55 | no |
| 125438 | aerobic | aerobicⓘ | yes | 55.23 | no |
| 125438 | thermophilic | thermophileⓘ | no | 100.00 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 89.47 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Cold-Active Shewanella glacialimarina TZS-4T nov. Features a Temperature-Dependent Fatty Acid Profile and Putative Sialic Acid Metabolism. | Qasim MS, Lampi M, Heinonen MK, Garrido-Zabala B, Bamford DH, Kakela R, Roine E, Sarin LP. | Front Microbiol | 10.3389/fmicb.2021.737641 | 2021 | |
| Metabolism | Shewanella decolorationis LDS1 Chromate Resistance. | Lemaire ON, Honore FA, Tempel S, Fortier EM, Leimkuhler S, Mejean V, Iobbi-Nivol C. | Appl Environ Microbiol | 10.1128/aem.00777-19 | 2019 | |
| Enzymology | Detection of food spoilage and pathogenic bacteria based on ligation detection reaction coupled to flow-through hybridization on membranes. | Bohme K, Cremonesi P, Severgnini M, Villa TG, Fernandez-No IC, Barros-Velazquez J, Castiglioni B, Calo-Mata P. | Biomed Res Int | 10.1155/2014/156323 | 2014 | |
| Phylogeny | Isolation, Physiological Characterization, and Antibiotic Susceptibility Testing of Fast-Growing Bacteria from the Sea-Affected Temporary Meltwater Ponds in the Thala Hills Oasis (Enderby Land, East Antarctica). | Akulava V, Miamin U, Akhremchuk K, Valentovich L, Dolgikh A, Shapaval V. | Biology (Basel) | 10.3390/biology11081143 | 2022 | |
| Genetics | Genomic Insights into Omega-3 Polyunsaturated Fatty Acid Producing Shewanella sp. N2AIL from Fish Gut. | Chaudhary A, Ketkar OA, Irfan S, Rana V, Rahi P, Deshmukh R, Kaur J, Dhar H. | Biology (Basel) | 10.3390/biology11050632 | 2022 | |
| Microbiological analysis of skin lesions of cod (Gadus morhua) from the southern part of the Baltic Sea. | Pekala-Safinska A, Nadolna-Altyn K, Rozycki M, Pazdzior E, Cencek T, Podolska M. | J Vet Res | 10.2478/jvetres-2024-0004 | 2024 | ||
| Phylogeny | Hydrolytic Exoenzymes Produced by Bacteria Isolated and Identified From the Gastrointestinal Tract of Bombay Duck. | Hossain TJ, Chowdhury SI, Mozumder HA, Chowdhury MNA, Ali F, Rahman N, Dey S. | Front Microbiol | 10.3389/fmicb.2020.02097 | 2020 | |
| Metabolism | Phenolic Profile, Antioxidant Capacity and Antimicrobial Activity of Nettle Leaves Extracts Obtained by Advanced Extraction Techniques. | Elez Garofulic I, Malin V, Repajic M, Zoric Z, Pedisic S, Sternisa M, Smole Mozina S, Dragovic-Uzelac V. | Molecules | 10.3390/molecules26206153 | 2021 | |
| Design and performance of a 16S rRNA-targeted oligonucleotide probe for detection of members of the genus Bdellovibrio by fluorescence in situ hybridization. | Mahmoud KK, McNeely D, Elwood C, Koval SF. | Appl Environ Microbiol | 10.1128/aem.01112-07 | 2007 | ||
| Phylogeny | Shewanella and Photobacterium spp. in oysters and seawater from the Delaware Bay. | Richards GP, Watson MA, Crane EJ, Burt IG, Bushek D. | Appl Environ Microbiol | 10.1128/aem.00060-08 | 2008 | |
| Phylogeny | Identification of Shewanella baltica as the most important H2S-producing species during iced storage of Danish marine fish. | Fonnesbech Vogel B, Venkateswaran K, Satomi M, Gram L. | Appl Environ Microbiol | 10.1128/aem.71.11.6689-6697.2005 | 2005 | |
| Enzymology | Multipurpose assessment for the quantification of Vibrio spp. and total bacteria in fish and seawater using multiplex real-time polymerase chain reaction. | Kim JY, Lee JL. | J Sci Food Agric | 10.1002/jsfa.6699 | 2014 | |
| Phylogeny | DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes. | Murray AE, Lies D, Li G, Nealson K, Zhou J, Tiedje JM. | Proc Natl Acad Sci U S A | 10.1073/pnas.171178898 | 2001 | |
| Phylogeny | Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. | Xu M, Guo J, Cen Y, Zhong X, Cao W, Sun G | Int J Syst Evol Microbiol | 10.1099/ijs.0.63157-0 | 2005 | |
| Phylogeny | Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. | Ziemke F, Hofle MG, Lalucat J, Rossello-Mora R | Int J Syst Bacteriol | 10.1099/00207713-48-1-179 | 1998 | |
| Phylogeny | Shewanella oncorhynchi sp. nov., a novel member of the genus Shewanella, isolated from Rainbow Trout (Oncorhynchus mykiss). | Altun S, Duman M, Ay H, Saticioglu IB | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005460 | 2022 |
| #3572 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9439 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40255 | ; Curators of the CIP; |
| #54761 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39356 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68374 | Automatically annotated from API ID32E . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116723 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105850 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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