Shewanella woodyi (DSM 12036, CIP 105547, MS32)

Name: Shewanella woodyi (DSM 12036, CIP 105547, MS32)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14063

Type strain

Strain Designation MS32, marine snow isolate 32

Culture col. no. DSM 12036 CIP 105547 MS32 ATCC 51908 MCCC 1A12977 1 more

NCBI tax ID(s) 392500 60961

Special Collections DSMZ CIP

Links

Shewanella woodyi MS32 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from detritus at a depth of 370 m.

Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 12781

LMG 18926,ATCC 51908,CIP 105547,NCIMB 13526,CECT 5108,DSM 12036

@ref 20215

Last LPSN update 2025-12-16 09:50:15

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella woodyi

Full scientific name Shewanella woodyi Makemson et al. 1997

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
123958	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4584	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
34049	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
123958	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4584	positive	growth	25	mesophilic
34049	positive	growth	25	mesophilic
123958	positive	growth	10-30
123958	negative	growth	5
123958	negative	growth	37
123958	negative	growth	41

Physiology and metabolism

Oxygen tolerance

123958

Oxygen tolerancefacultative anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123958	NaCl	positive	growth	2-6 %
123958	NaCl		growth	0 %
123958	NaCl		growth	8 %
123958	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
123958	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
123958	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
123958	17632 ChEBI	nitrate	+	reduction
123958	17632 ChEBI	nitrate	+	respiration
123958	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
123958	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123958	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123958	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123958	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
123958	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123958	caseinase	-	3.4.21.50
123958	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
123958	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123958	gelatinase	-
123958	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123958	lipase	-
68382	lipase (C 14)	-		from API zym
123958	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
123958	ornithine decarboxylase	-	4.1.1.17
123958	oxidase	+
123958	protease	-
68382	trypsin	+	3.4.21.4	from API zym
123958	tryptophan deaminase	-
123958	tween esterase	+
123958	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123958	-	+	+	+	-	+	-	-	+	-	+	-	-	-	-	-	-	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123958	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123958	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	-	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Other	#Decomposing animal
#Host	#Plants	#Decomposing plant

Isolation

@ref	Sample type	Country	Isolation date	Geographic location
4584	detritus at a depth of 370 m			Mediterranean, Alboran Sea
123958	Detritus, luminous, 370 m depth	Alboran Sea	1993

Taxonmaps

69479

Global distribution of 16S sequence AF003549 (>99% sequence identity) for Shewanella woodyi subclade from Microbeatlas

Aquatic Samples	828
Soil Samples	11
Animal Samples	145
Plant Samples	1
Total Samples	985

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4584	1	Risk group (German classification) According to TRBA 466
123958	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1952v1 assembly for Shewanella woodyi ATCC 51908	complete	GCA_000019525	392500.6	641522649	392500	99.33

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Shewanella woodyi 16S ribosomal RNA gene, complete sequence	AF003549	1443		392500

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic Analysis of the Deep-Sea Bacterium Shewanella sp. MTB7 Reveals Backgrounds Related to Its Deep-Sea Environment Adaptation.	Li S, Wang J, Liu J, Zhang H, Bao T, Sun C, Fang J, Cao J.	Microorganisms	10.3390/microorganisms11030798	2023
	Biotechnological applications of S-adenosyl-methionine-dependent methyltransferases for natural products biosynthesis and diversification.	Zhang C, Sultan SA, T R, Chen X.	Bioresour Bioprocess	10.1186/s40643-021-00425-y	2021
	Identification of the new prenyltransferase Ubi-297 from marine bacteria and elucidation of its substrate specificity.	Amiri Moghaddam J, Guo H, Willing K, Wichard T, Beemelmanns C.	Beilstein J Org Chem	10.3762/bjoc.18.72	2022
	Deep-Sea Bacterium Shewanella piezotolerans WP3 Has Two Dimethyl Sulfoxide Reductases in Distinct Subcellular Locations.	Xiong L, Jian H, Xiao X.	Appl Environ Microbiol	10.1128/aem.01262-17	2017
Metabolism	Evidence for Horizontal and Vertical Transmission of Mtr-Mediated Extracellular Electron Transfer among the Bacteria.	Baker IR, Conley BE, Gralnick JA, Girguis PR.	mBio	10.1128/mbio.02904-21	2021
	A nested leucine rich repeat (LRR) domain: the precursor of LRRs is a ten or eleven residue motif.	Matsushima N, Miyashita H, Mikami T, Kuroki Y.	BMC Microbiol	10.1186/1471-2180-10-235	2010
	Analysis of EAWAG-BBD pathway prediction system for the identification of malathion degrading microbes.	Sivakumar S, Anitha P, Ramesh B, Suresh G.	Bioinformation	10.6026/97320630013073	2017
Enzymology	Biological Potential of Chitinolytic Marine Bacteria.	Paulsen SS, Andersen B, Gram L, Machado H.	Mar Drugs	10.3390/md14120230	2016
	A Hypothetical Protein of Alteromonas macleodii AltDE1 (amad1_06475) Predicted to be a Cold-Shock Protein with RNA Chaperone Activity.	Oany AR, Ahmad SA, Kibria KK, Hossain MU, Jyoti TP.	Gene Regul Syst Bio	10.4137/grsb.s20802	2014
Genetics	Mining of Microbial Genomes for the Novel Sources of Nitrilases.	Sharma N, Thakur N, Raj T, Savitri, Bhalla TC.	Biomed Res Int	10.1155/2017/7039245	2017
Phylogeny	New group in the Leptospirillum clade: cultivation-independent community genomics, proteomics, and transcriptomics of the new species "Leptospirillum group IV UBA BS".	Goltsman DS, Dasari M, Thomas BC, Shah MB, VerBerkmoes NC, Hettich RL, Banfield JF.	Appl Environ Microbiol	10.1128/aem.00202-13	2013
	Complete sequence of a novel 178-kilobase plasmid carrying bla(NDM-1) in a Providencia stuartii strain isolated in Afghanistan.	McGann P, Hang J, Clifford RJ, Yang Y, Kwak YI, Kuschner RA, Lesho EP, Waterman PE.	Antimicrob Agents Chemother	10.1128/aac.05604-11	2012
Metabolism	A novel MAs(III)-selective ArsR transcriptional repressor.	Chen J, Nadar VS, Rosen BP.	Mol Microbiol	10.1111/mmi.13826	2017
Genetics	GRSR: a tool for deriving genome rearrangement scenarios from multiple unichromosomal genome sequences.	Wang D, Wang L.	BMC Bioinformatics	10.1186/s12859-018-2268-1	2018
Pathogenicity	AIP56: a novel bacterial apoptogenic toxin.	Silva MT, Dos Santos NM, do Vale A.	Toxins (Basel)	10.3390/toxins2040905	2010
Phylogeny	Genome-level homology and phylogeny of Shewanella (Gammaproteobacteria: lteromonadales: Shewanellaceae).	Dikow RB.	BMC Genomics	10.1186/1471-2164-12-237	2011
Metabolism	A radical S-adenosyl-L-methionine enzyme and a methyltransferase catalyze cyclopropane formation in natural product biosynthesis.	Jin WB, Wu S, Jian XH, Yuan H, Tang GL.	Nat Commun	10.1038/s41467-018-05217-1	2018
	MapA, a Second Large RTX Adhesin Conserved across the Pseudomonads, Contributes to Biofilm Formation by Pseudomonas fluorescens.	Collins AJ, Pastora AB, Smith TJ, O'Toole GA.	J Bacteriol	10.1128/jb.00277-20	2020
Metabolism	Hydrogen peroxide linked to lysine oxidase activity facilitates biofilm differentiation and dispersal in several gram-negative bacteria.	Mai-Prochnow A, Lucas-Elio P, Egan S, Thomas T, Webb JS, Sanchez-Amat A, Kjelleberg S.	J Bacteriol	10.1128/jb.00549-08	2008
	Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes.	Karpinets TV, Obraztsova AY, Wang Y, Schmoyer DD, Kora GH, Park BH, Serres MH, Romine MF, Land ML, Kothe TB, Fredrickson JK, Nealson KH, Uberbacher EC.	Funct Integr Genomics	10.1007/s10142-009-0142-y	2010
	Histoplasma capsulatum proteome response to decreased iron availability.	Winters MS, Spellman DS, Chan Q, Gomez FJ, Hernandez M, Catron B, Smulian AG, Neubert TA, Deepe GS.	Proteome Sci	10.1186/1477-5956-6-36	2008
Metabolism	Nodulation Characterization and Proteomic Profiling of Bradyrhizobium liaoningense CCBAU05525 in Response to Water-Soluble Humic Materials.	Guo Gao T, Yuan Xu Y, Jiang F, Zhen Li B, Shui Yang J, Tao Wang E, Li Yuan H.	Sci Rep	10.1038/srep10836	2015
Metabolism	Interplay of heritage and habitat in the distribution of bacterial signal transduction systems.	Galperin MY, Higdon R, Kolker E.	Mol Biosyst	10.1039/b908047c	2010
	Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.	Silverio AL, Saier MH.	J Membr Biol	10.1007/s00232-011-9364-8	2011
Metabolism	Shewanella spp. genomic evolution for a cold marine lifestyle and in-situ explosive biodegradation.	Zhao JS, Deng Y, Manno D, Hawari J.	PLoS One	10.1371/journal.pone.0009109	2010
Phylogeny	Genomic analysis reveals versatile organisms for quorum quenching enzymes: acyl-homoserine lactone-acylase and -lactonase.	Kalia VC, Raju SC, Purohit HJ.	Open Microbiol J	10.2174/1874285801105010001	2011
Enzymology	The AsaP1 peptidase of Aeromonas salmonicida subsp. achromogenes is a highly conserved deuterolysin metalloprotease (family M35) and a major virulence factor.	Arnadottir H, Hvanndal I, Andresdottir V, Burr SE, Frey J, Gudmundsdottir BK.	J Bacteriol	10.1128/jb.00847-08	2009
Metabolism	SO2426 is a positive regulator of siderophore expression in Shewanella oneidensis MR-1.	Henne KL, Wan XF, Wei W, Thompson DK.	BMC Microbiol	10.1186/1471-2180-11-125	2011
	Role and regulation of fatty acid biosynthesis in the response of Shewanella piezotolerans WP3 to different temperatures and pressures.	Wang F, Xiao X, Ou HY, Gai Y, Wang F.	J Bacteriol	10.1128/jb.00498-08	2009
Phylogeny	DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes.	Murray AE, Lies D, Li G, Nealson K, Zhou J, Tiedje JM.	Proc Natl Acad Sci U S A	10.1073/pnas.171178898	2001
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
Phylogeny	Bioinformatic characterization of the 4-Toluene Sulfonate Uptake Permease (TSUP) family of transmembrane proteins.	Shlykov MA, Zheng WH, Chen JS, Saier MH.	Biochim Biophys Acta	10.1016/j.bbamem.2011.12.005	2012
Phylogeny	A system to automatically classify and name any individual genome-sequenced organism independently of current biological classification and nomenclature.	Marakeby H, Badr E, Torkey H, Song Y, Leman S, Monteil CL, Heath LS, Vinatzer BA.	PLoS One	10.1371/journal.pone.0089142	2014
Metabolism	DotU and VgrG, core components of type VI secretion systems, are essential for Francisella LVS pathogenicity.	Broms JE, Meyer L, Lavander M, Larsson P, Sjostedt A.	PLoS One	10.1371/journal.pone.0034639	2012
	Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.	Peer A, Smith SP, Bayer EA, Lamed R, Borovok I.	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01420.x	2009
Phylogeny	Shewanella woodyi sp. nov., an exclusively respiratory luminous bacterium isolated from the Alboran Sea.	Makemson JC, Fulayfil NR, Landry W, Van Ert LM, Wimpee CF, Widder EA, Case JF.	Int J Syst Bacteriol	10.1099/00207713-47-4-1034	1997

References

#4584	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12036
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34049	; Curators of the CIP;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123958	Collection of Institut Pasteur ; Curators of the CIP; CIP 105547
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella woodyi (DSM 12036, CIP 105547, MS32)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000019525

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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