Name: Planomonospora corallina A-T 11038
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140639

Type strain:

Species: Planomonospora corallina

Strain Designation: A-T 11038

Culture col. no.: BCC 67829, TBRC 4489, NBRC 110609, DSM 111735

NCBI tax ID(s): 1806052 (species)

SI-ID 404485

DSM 111735

Special Collections

Section

Planomonospora corallina A-T 11038 is an aerobe, spore-forming, Gram-positive bacterium that builds a substrate mycelium and was isolated from bamboo rhizospheric soil.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Planomonospora*
	Species	**Planomonospora corallina**
	Full Scientific Name (LPSN)	Planomonospora corallina Suriyachadkun et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43075]	Gram stain	positive

[Ref.: #43075]	Pigment production	no
[Ref.: #43075]	Pigment name	soluble pigments

[Ref.: #43075]	Multicellular complex forming ability	yes
[Ref.: #43075]	Multicellular complex name	substrate mycelium
[Ref.: #43075]	Multicellular complex color	yellowish-pink
[Ref.: #43075]	Medium Name (multicellularity)	ISP2 (pH 9)

[Ref.: #43075]	Multicellular complex forming ability	yes
[Ref.: #43075]	Multicellular complex name	substrate mycelium
[Ref.: #43075]	Multicellular complex color	light orange
[Ref.: #43075]	Medium Name (multicellularity)	ISP4

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP2

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Culture medium growth

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Culture medium

ISP4

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Culture medium growth

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Culture medium

Czapek's agar

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Culture medium growth

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #67664]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43075]	optimum	25-30 °C
[Ref.: #43075]	growth	20-37 °C
[Ref.: #67664]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #43075]			optimum	8-9
[Ref.: #43075]			growth	6-11

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #43075]	Type of spore	spore
[Ref.: #43075]	Ability of spore formation	yes

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43075]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #43075]	cellobiose ChEBI	+	assimilation
[Ref.: #43075]	D-fructose ChEBI	+	assimilation
[Ref.: #43075]	D-galactose ChEBI	+	assimilation
[Ref.: #43075]	D-glucose ChEBI	+	assimilation
[Ref.: #43075]	D-mannitol ChEBI	+	assimilation
[Ref.: #43075]	D-mannose ChEBI	-	assimilation
[Ref.: #43075]	D-ribose ChEBI	-	assimilation
[Ref.: #43075]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43075]	D-xylose ChEBI	+	assimilation
[Ref.: #43075]	gelatin ChEBI	-	degradation
[Ref.: #43075]	glycerol ChEBI	-	assimilation
[Ref.: #43075]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43075]	L-arabinose ChEBI	-	assimilation
[Ref.: #43075]	L-rhamnose ChEBI	+	assimilation
[Ref.: #43075]	lactose ChEBI	-	assimilation
[Ref.: #43075]	maltose ChEBI	-	assimilation
[Ref.: #43075]	melibiose ChEBI	-	assimilation
[Ref.: #43075]	milk	-	degradation
[Ref.: #43075]	myo-inositol ChEBI	-	assimilation
[Ref.: #43075]	nitrate ChEBI	+	reduction
[Ref.: #43075]	raffinose ChEBI	-	assimilation
[Ref.: #43075]	salicin ChEBI	-	assimilation
[Ref.: #43075]	sorbose ChEBI	-	assimilation
[Ref.: #43075]	starch ChEBI	+	hydrolysis
[Ref.: #43075]	sucrose ChEBI	-	assimilation
[Ref.: #43075]	trehalose ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43075]	acid phosphatase	+	3.1.3.2
[Ref.: #43075]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43075]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43075]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43075]	beta-galactosidase	+	3.2.1.23
[Ref.: #43075]	beta-glucosidase	+	3.2.1.21
[Ref.: #43075]	catalase	+	1.11.1.6
[Ref.: #43075]	cystine arylamidase	+	3.4.11.3
[Ref.: #43075]	esterase (C 4)	+
[Ref.: #43075]	esterase Lipase (C 8)	+
[Ref.: #43075]	leucine arylamidase	+	3.4.11.1
[Ref.: #43075]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43075]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43075]	trypsin	+	3.4.21.4
[Ref.: #43075]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C17:1	25.6
C16:0	11.8
C16:1	11.4
C17:0	8.9
C18:1	7.8
C16:0 iso	7.6
C14:0	5.7
10-methyl C17:0	5.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43075]	Sample type/isolated from	bamboo (Cephalostachyum pergracile) rhizospheric soil
[Ref.: #43075]	Geographic location (country and/or sea, region)	Phitsanulok Province, Thailand
[Ref.: #43075]	Country	Thailand
[Ref.: #43075]	Country ISO 3 Code	THA
[Ref.: #43075]	Continent	Asia

[Ref.: #67664]	Sample type/isolated from	Bamboo rhizospheric soil
[Ref.: #67664]	Geographic location (country and/or sea, region)	Phitsanulok
[Ref.: #67664]	Country	Thailand
[Ref.: #67664]	Country ISO 3 Code	THA
[Ref.: #67664]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

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Global distribution of 16S sequence KU159576 (>99% sequence identity) for Planomonospora corallina from Microbeatlas

Aquatic Samples	23
Soil Samples	34
Animal Samples	56
Plant Samples	3
Total Samples	116

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43075]	Planomonospora corallina strain A-T 11038 16S ribosomal RNA gene, partial sequence	KU159576	1452	GenBank ENA	1806052 tax ID

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GC-content

73.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

BCC 67829, TBRC 4489, NBRC 110609, DSM 111735

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SI-ID 404485

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planomonospora corallina sp. nov., isolated from soil.	Suriyachadkun C, Ngaemthao W, Chunhametha S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001178	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43075

Chanwit Suriyachadkun, Wipaporn Ngaemthao and Suwanee Chunhametha: Planomonospora corallina sp. nov., isolated from soil. IJSEM 66: 3224 - 3229 2016 ( DOI 10.1099/ijsem.0.001178 , PubMed 27217033 )

#67664

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111735

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96765

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404485.1 )

* These data were automatically processed and therefore are not curated

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