Strain identifier

BacDive ID: 140639

Type strain: Yes

Species: Planomonospora corallina

Strain Designation: A-T 11038

NCBI tax ID(s): 1806052 (species)

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General

@ref: 67664

BacDive-ID: 140639

DSM-Number: 111735

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Planomonospora corallina A-T 11038 is an aerobe, spore-forming, Gram-positive bacterium that builds a substrate mycelium and was isolated from bamboo rhizospheric soil.

NCBI tax id

  • NCBI tax id: 1806052
  • Matching level: species

doi: 10.13145/bacdive140639.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Planomonospora
  • species: Planomonospora corallina
  • full scientific name: Planomonospora corallina Suriyachadkun et al. 2016

@ref: 67664

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Streptosporangiaceae

genus: Planomonospora

species: Planomonospora corallina

full scientific name: Planomonospora corallina Suriyachadkun et al. 2016

strain designation: A-T 11038

type strain: yes

Morphology

cell morphology

  • @ref: 43075
  • gram stain: positive

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
43075yessubstrate myceliumyellowish-pinkISP2 (pH 9)
43075yessubstrate myceliumlight orangeISP4

pigmentation

  • @ref: 43075
  • production: no
  • name: soluble pigments

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43075ISP2yes
43075ISP4yes
43075Czapek's agaryes
67664GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
67664ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
43075positiveoptimum25-30
43075positivegrowth20-37
67664positivegrowth28

culture pH

@refabilitytypepHPH range
43075positivegrowth6-11alkaliphile
43075positiveoptimum8-9

Physiology and metabolism

oxygen tolerance

  • @ref: 43075
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43075
  • type of spore: spore
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4307517057cellobiose+assimilation
4307515824D-fructose+assimilation
4307512936D-galactose+assimilation
4307517634D-glucose+assimilation
4307516899D-mannitol+assimilation
4307562345L-rhamnose+assimilation
4307527082trehalose+assimilation
4307565327D-xylose+assimilation
4307530849L-arabinose-assimilation
4307517754glycerol-assimilation
4307517268myo-inositol-assimilation
4307517716lactose-assimilation
4307517306maltose-assimilation
4307528053melibiose-assimilation
4307516634raffinose-assimilation
4307516988D-ribose-assimilation
4307517814salicin-assimilation
4307517924D-sorbitol-assimilation
4307527922sorbose-assimilation
4307517992sucrose-assimilation
4307528017starch+hydrolysis
4307585146carboxymethylcellulose+hydrolysis
4307517632nitrate+reduction
430755291gelatin-degradation
43075milk-degradation
4307516024D-mannose-assimilation
4307517368hypoxanthine-hydrolysis

enzymes

@refvalueactivityec
43075alkaline phosphatase+3.1.3.1
43075esterase (C 4)+
43075esterase Lipase (C 8)+
43075leucine arylamidase+3.4.11.1
43075valine arylamidase+
43075cystine arylamidase+3.4.11.3
43075trypsin+3.4.21.4
43075alpha-chymotrypsin+3.4.21.1
43075acid phosphatase+3.1.3.2
43075naphthol-AS-BI-phosphohydrolase+
43075beta-galactosidase+3.2.1.23
43075alpha-glucosidase+3.2.1.20
43075beta-glucosidase+3.2.1.21
43075N-acetyl-beta-glucosaminidase+3.2.1.52
43075catalase+1.11.1.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43075C17:125.6
    43075C16:111.4
    43075C16:011.8
    43075C14:05.7
    43075C17:08.9
    43075C18:17.8
    43075C16:0 iso7.6
    4307510-methyl C17:05.2
  • type of FA analysis: whole cell analysis
  • incubation medium: glucose-yeast extract broth
  • agar/liquid: liquid
  • incubation temperature: 30
  • incubation time: 14
  • software version: Sherlock 6.2B
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
43075bamboo (Cephalostachyum pergracile) rhizospheric soilPhitsanulok Province, ThailandThailandTHAAsia
67664Bamboo rhizospheric soilPhitsanulokThailandTHAAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_94675.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_1144;97_2268;98_2784;99_94675&stattab=map
  • Last taxonomy: Planomonospora corallina
  • 16S sequence: KU159576
  • Sequence Identity:
  • Total samples: 116
  • soil counts: 34
  • aquatic counts: 23
  • animal counts: 56
  • plant counts: 3

Safety information

risk assessment

  • @ref: 67664
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 43075
  • description: Planomonospora corallina strain A-T 11038 16S ribosomal RNA gene, partial sequence
  • accession: KU159576
  • length: 1452
  • database: nuccore
  • NCBI tax ID: 1806052

GC content

  • @ref: 43075
  • GC-content: 73.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67664

culture collection no.: BCC 67829, TBRC 4489, NBRC 110609, DSM 111735

straininfo link

  • @ref: 96765
  • straininfo: 404485

literature

  • topic: Phylogeny
  • Pubmed-ID: 27217033
  • title: Planomonospora corallina sp. nov., isolated from soil.
  • authors: Suriyachadkun C, Ngaemthao W, Chunhametha S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001178
  • year: 2016
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43075Chanwit Suriyachadkun, Wipaporn Ngaemthao and Suwanee ChunhamethaPlanomonospora corallina sp. nov., isolated from soil10.1099/ijsem.0.001178IJSEM 66: 3224-3229 201627217033
67664Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-111735Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 111735)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96765Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404485.1