Name: Corynebacterium guangdongense S01
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140638

Type strain:

Species: Corynebacterium guangdongense

Strain Designation: S01

Culture col. no.: KCTC 39608, CCTCC AB 2015423, GDMCC 1.1022, DSM 107476

Strain history: <- KCTC; KCTC 39608 <- H.-H. Zhu, State Key Lab of Applied Microbiology Southern China; S01

NCBI tax ID(s): 1783348 (species)

SI-ID 404385

DSM 107476

Special Collections

Section

Corynebacterium guangdongense S01 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from contaminated NA plate.

colony-forming
Gram-positive
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium guangdongense**
	Full Scientific Name (LPSN)	Corynebacterium guangdongense Li et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43073]	Gram stain	positive

[Ref.: #43073]	Cell length	2.0-5.0 µm

[Ref.: #43073]	Cell width	0.9-1.5 µm

[Ref.: #43073]	Cell shape	rod-shaped

[Ref.: #43073]	Motility	no

[Ref.: #43073]	Colony size	1.0-1.5 mm
[Ref.: #43073]	Colony color	light-yellow
[Ref.: #43073]	Colony shape	circular
[Ref.: #43073]	Incubation period	3 days
[Ref.: #43073]	Cultivation medium used	Nutrient agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43073]

Culture medium

Nutrient agar (NA)

[Ref.: #43073]

Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43073]

Culture medium growth

[Ref.: #43073]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43073]

Culture medium growth

[Ref.: #43073]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43073]

Culture medium growth

[Ref.: #43073]

Culture medium

2216E agar

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Culture medium growth

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #64816]

Culture medium composition

expand / minimize

[Ref.: #64816]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #64816]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #64816]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43073]	optimum	25-30 °C
[Ref.: #43073]	growth	10-45 °C
[Ref.: #64816]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43073]			optimum	7
[Ref.: #43073]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43073]

Oxygen tolerance

facultative anaerobe

[Ref.: #43073]	Type of spore	spore
[Ref.: #43073]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43073]		NaCl		growth	0-9	%(w/v)
[Ref.: #43073]		NaCl		optimum	0-2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43073]	(S)-lactate ChEBI	-	assimilation
[Ref.: #43073]	2-oxobutanoate ChEBI	+	assimilation
[Ref.: #43073]	4-hydroxyphenylacetic acid ChEBI	-	assimilation
[Ref.: #43073]	acetate ChEBI	+	assimilation
[Ref.: #43073]	acetoacetate ChEBI	+	assimilation
[Ref.: #43073]	bromosuccinate ChEBI	-	assimilation
[Ref.: #43073]	D-arabitol ChEBI	-	assimilation
[Ref.: #43073]	D-fructose ChEBI	-	assimilation
[Ref.: #43073]	D-fructose 6-phosphate ChEBI	-	assimilation
[Ref.: #43073]	D-fucose ChEBI	-	assimilation
[Ref.: #43073]	D-galactonic acid lactone ChEBI	-	assimilation
[Ref.: #43073]	D-gluconate ChEBI	+	assimilation
[Ref.: #43073]	D-glucose ChEBI	+	assimilation
[Ref.: #43073]	D-glucuronate ChEBI	+	assimilation
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #43073]	D-mannose ChEBI	-	assimilation
[Ref.: #43073]	D-serine ChEBI	-	assimilation
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #43073]	dextrin ChEBI	+	assimilation
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #43073]	gamma-aminobutyric acid ChEBI	-	assimilation
[Ref.: #43073]	gelatin ChEBI	+	hydrolysis
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #43073]	glucose ChEBI	-	fermentation
[Ref.: #43073]	glucose ChEBI	+	builds acid from
[Ref.: #43073]	glucuronamide ChEBI	+	assimilation
[Ref.: #43073]	glycerol ChEBI	-	assimilation
[Ref.: #43073]	glycogen ChEBI	-	builds acid from
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #43073]	inosine ChEBI	-	assimilation
[Ref.: #43073]	L-aspartate ChEBI	+	assimilation
[Ref.: #43073]	L-glutamate ChEBI	+	assimilation
[Ref.: #43073]	L-histidine ChEBI	-	assimilation
[Ref.: #43073]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43073]	lactose ChEBI	-	builds acid from
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #43073]	maltose ChEBI	-	builds acid from
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #43073]	mannitol ChEBI	-	builds acid from
[Ref.: #43073]	melibiose ChEBI	-	assimilation
[Ref.: #43073]	methyl beta-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #43073]	methyl pyruvate ChEBI	+	assimilation
[Ref.: #43073]	N-acetyl-beta-D-mannosamine ChEBI	-	assimilation
[Ref.: #43073]	N-acetylgalactosamine ChEBI	-	assimilation
[Ref.: #43073]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43073]	n-acetylneuraminate ChEBI	-	assimilation
[Ref.: #43073]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #43073]	pectin ChEBI	-	assimilation
[Ref.: #43073]	propionate ChEBI	+	assimilation
[Ref.: #43073]	ribose ChEBI	+	builds acid from
[Ref.: #43073]	ribose ChEBI	+	fermentation
[Ref.: #43073]	salicin ChEBI	-	assimilation
[Ref.: #43073]	sucrose ChEBI	-	builds acid from
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #43073]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43073]		acetoin ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43073]		acetoin ChEBI	-
[Ref.: #43073]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43073]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #43073]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #43073]	beta-galactosidase	-	3.2.1.23
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #43073]	beta-glucosidase	-	3.2.1.21
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #43073]	beta-glucuronidase	+	3.2.1.31
[Ref.: #68379]	beta-glucuronidase	+	3.2.1.31	* from API Coryne
[Ref.: #43073]	catalase	+	1.11.1.6
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #43073]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #43073]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #43073]	pyrazinamidase	+	3.5.1.B15
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #43073]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #43073]	urease	+	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43073]

Fatty acid	Percentage
C18:1ω9c	49.8
C16:0	27.8
10-methyl C18:0	9.6
C18:0	9.4
C14:0	1.8
C16:1ω9c	1.7

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #64816]	4205	+	+	-	+	+	-	-	-	-	+	-	-	+/-	+/-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43073]	Sample type/isolated from	contaminated NA plate
[Ref.: #43073]	Geographic location (country and/or sea, region)	Guangdong Province, PR China
[Ref.: #43073]	Country	China
[Ref.: #43073]	Country ISO 3 Code	CHN
[Ref.: #43073]	Continent	Asia

[Ref.: #64816]	Sample type/isolated from	contaminated nutrient agar plate
[Ref.: #64816]	Geographic location (country and/or sea, region)	Guangdong Institute of Microbiology, Guangzhou
[Ref.: #64816]	Country	China
[Ref.: #64816]	Country ISO 3 Code	CHN
[Ref.: #64816]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Engineered	#Laboratory	#Defined media

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_151871 (>99% sequence identity) for Corynebacterium guangdongense subclade from Microbeatlas

Aquatic Samples	321
Soil Samples	517
Animal Samples	2870
Plant Samples	200
Total Samples	3908

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64816]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64816]	Corynebacterium guangdongense strain S01 16S ribosomal RNA gene, partial sequence	KT892940	1441	GenBank ENA	1783348 tax ID
[Ref.: #64816]	Corynebacterium guangdongense strain S01 16S ribosomal RNA, partial sequence	NR_151871	1441	GenBank ENA	1783348 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Corynebacterium guangdongense DSM 107476	2923418710	draft	JGI IMG/M	1783348 tax ID	*

[Ref.: #64816]

GC-content

70.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #64816]

Culture collection no.

KCTC 39608, CCTCC AB 2015423, GDMCC 1.1022, DSM 107476

[Ref.: #96764]

SI-ID 404385

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium guangdongense sp. nov., isolated from a contaminated plate.	Li YX, Yang SZ, Feng GD, Wang YH, Zhu HH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001177	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43073

Yan-Xuan Li, Song-Zhen Yang, Guang-Da Feng, Yong-Hong Wang and Hong-Hui Zhu: Corynebacterium guangdongense sp. nov., isolated from a contaminated plate. IJSEM 66: 3201 - 3206 2016 ( DOI 10.1099/ijsem.0.001177 , PubMed 27216930 )

#64816

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107476

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68379

Automatically annotated from API Coryne .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96764

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404385.1 )

* These data were automatically processed and therefore are not curated

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