Name: Marinobacterium zhoushanense WM3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140627

Type strain:

Species: Marinobacterium zhoushanense

Strain Designation: WM3

Culture col. no.: CGMCC 1.15341, KCTC 42782

NCBI tax ID(s): 1679163 (species)

Section

Marinobacterium zhoushanense WM3 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from surface seawater.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacterium*
	Species	**Marinobacterium zhoushanense**
	Full Scientific Name (LPSN)	Marinobacterium zhoushanense Han et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43152]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #43152]	Cell length	1.0-2.0 µm

[Ref.: #43152]	Cell width	0.4-0.6 µm

[Ref.: #43152]	Cell shape	rod-shaped

[Ref.: #43152]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.961

[Ref.: #43152]	Colony size	0.5-1.0 mm
[Ref.: #43152]	Colony color	cream
[Ref.: #43152]	Colony shape	circular
[Ref.: #43152]	Incubation period	1 day
[Ref.: #43152]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43152]

Culture medium

Marine agar (MA)

[Ref.: #43152]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43152]		optimum	37-40 °C
[Ref.: #43152]	no	growth	45 °C
[Ref.: #43152]	no	growth	4 °C
[Ref.: #43152]		growth	15-43 °C

[Ref.: #43152]	Temperature range	thermophilic
[Ref.: #43152]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #43152]			optimum	6.5-7.5
[Ref.: #43152]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43152]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43152]		NaCl		growth	0.25-9.0	%(w/v)
[Ref.: #43152]		NaCl		optimum	1.0-1.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43152]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #43152]	4-hydroxybutyrate ChEBI	+/-	carbon source
[Ref.: #43152]	4-hydroxyphenylacetic acid ChEBI	+	carbon source
[Ref.: #43152]	acetate ChEBI	+/-	carbon source
[Ref.: #43152]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43152]	arabinose ChEBI	+	builds acid from
[Ref.: #43152]	beta-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #43152]	bromosuccinate ChEBI	+/-	carbon source
[Ref.: #43152]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43152]	casein	-	hydrolysis
[Ref.: #43152]	cis-aconitate ChEBI	+/-	carbon source
[Ref.: #43152]	citrate ChEBI	+/-	carbon source
[Ref.: #43152]	D-alanine ChEBI	+	carbon source
[Ref.: #43152]	D-arabitol ChEBI	+	carbon source
[Ref.: #43152]	D-fructose ChEBI	+	carbon source
[Ref.: #43152]	D-galactose ChEBI	+	carbon source
[Ref.: #43152]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #43152]	D-gluconate ChEBI	+	carbon source
[Ref.: #43152]	D-glucose ChEBI	+	builds acid from
[Ref.: #43152]	D-glucuronate ChEBI	+	carbon source
[Ref.: #43152]	D-mannitol ChEBI	+	carbon source
[Ref.: #43152]	D-mannose ChEBI	+	builds acid from
[Ref.: #43152]	D-saccharate ChEBI	+/-	carbon source
[Ref.: #43152]	esculin ChEBI	-	hydrolysis
[Ref.: #43152]	formate ChEBI	+	carbon source
[Ref.: #43152]	fructose ChEBI	+	builds acid from
[Ref.: #43152]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #43152]	gelatin ChEBI	-	hydrolysis
[Ref.: #43152]	glucose ChEBI	+	fermentation
[Ref.: #43152]	glycerol ChEBI	+	carbon source
[Ref.: #43152]	glycogen ChEBI	+/-	carbon source
[Ref.: #43152]	L-alaninamide ChEBI	+	carbon source
[Ref.: #43152]	L-alanine ChEBI	+	carbon source
[Ref.: #43152]	L-alanylglycine ChEBI	+/-	carbon source
[Ref.: #43152]	L-arabinose ChEBI	+	carbon source
[Ref.: #43152]	L-asparagine ChEBI	+/-	carbon source
[Ref.: #43152]	L-aspartate ChEBI	+/-	carbon source
[Ref.: #43152]	L-glutamate ChEBI	+	carbon source
[Ref.: #43152]	L-ornithine ChEBI	+	carbon source
[Ref.: #43152]	L-phenylalanine ChEBI	+	carbon source
[Ref.: #43152]	L-proline ChEBI	+	carbon source
[Ref.: #43152]	L-pyroglutamic acid ChEBI	+	carbon source
[Ref.: #43152]	lactate ChEBI	+	carbon source
[Ref.: #43152]	malonate ChEBI	+	carbon source
[Ref.: #43152]	maltose ChEBI	+	carbon source
[Ref.: #43152]	methyl pyruvate ChEBI	+/-	carbon source
[Ref.: #43152]	monomethyl succinate ChEBI	-	carbon source
[Ref.: #43152]	nitrate ChEBI	+	reduction
[Ref.: #43152]	nitrite ChEBI	-	reduction
[Ref.: #43152]	phenylethylamine ChEBI	+	carbon source
[Ref.: #43152]	propionate ChEBI	+	carbon source
[Ref.: #43152]	putrescine ChEBI	+	carbon source
[Ref.: #43152]	quinate ChEBI	+	carbon source
[Ref.: #43152]	starch ChEBI	-	hydrolysis
[Ref.: #43152]	succinate ChEBI	+	carbon source
[Ref.: #43152]	sucrose ChEBI	+	carbon source
[Ref.: #43152]	trehalose ChEBI	+	carbon source
[Ref.: #43152]	turanose ChEBI	+	carbon source
[Ref.: #43152]	tween 40 ChEBI	+/-	carbon source
[Ref.: #43152]	tween 80 ChEBI	+/-	carbon source
[Ref.: #43152]	tyrosine ChEBI	+	hydrolysis
[Ref.: #43152]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43152]	amikacin ChEBI				yes	30	µg (disc)
[Ref.: #43152]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43152]	bacitracin ChEBI				yes	0.04	Unit
[Ref.: #43152]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43152]	cefazolin ChEBI				yes	30	µg (disc)
[Ref.: #43152]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #43152]	cephradine ChEBI	yes	30	µg (disc)
[Ref.: #43152]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43152]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43152]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43152]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43152]	lincomycin ChEBI				yes	2	µg (disc)
[Ref.: #43152]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #43152]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43152]	nitrofurantoin ChEBI	yes	300	µg (disc)
[Ref.: #43152]	polymyxin b ChEBI				yes	300	Unit
[Ref.: #43152]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43152]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43152]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43152]	vancomycin ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43152]	acetoin ChEBI	no
[Ref.: #43152]	hydrogen sulfide ChEBI	no
[Ref.: #43152]	indole ChEBI	no
[Ref.: #43152]	polyhydroxybutyrate ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43152]		acetoin ChEBI	-
[Ref.: #43152]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #43152]	acid phosphatase	+	3.1.3.2
[Ref.: #43152]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43152]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43152]	beta-glucosidase	-	3.2.1.21
[Ref.: #43152]	catalase	+	1.11.1.6
[Ref.: #43152]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43152]	esterase (C 4)	+
[Ref.: #43152]	esterase Lipase (C 8)	+/-
[Ref.: #43152]	leucine arylamidase	+	3.4.11.1
[Ref.: #43152]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43152]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43152]	Sample type/isolated from	surface seawater
[Ref.: #43152]	Sampling date	2014-04
[Ref.: #43152]	Geographic location (country and/or sea, region)	Zhoushan Islands, East China Sea
[Ref.: #43152]	Country	China
[Ref.: #43152]	Country ISO 3 Code	CHN
[Ref.: #43152]	Continent	Asia
[Ref.: #43152]	Geographic location	30.0000°/122.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT248536 (>99% sequence identity) for Marinobacterium zhoushanense subclade from Microbeatlas

Aquatic Samples	1084
Soil Samples	245
Animal Samples	304
Plant Samples	56
Total Samples	1689

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43152]	16S rRNA gene sequences	KT248536	1486	ENA	1679163 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacterium zhoushanense CGMCC 1.15341	GCA_014641945	scaffold	GenBank	1679163 tax ID	*
[Ref.: #66792]	Marinobacterium zhoushanense strain CGMCC 1.15341	1679163.3	wgs	PATRIC	1679163 tax ID	*

[Ref.: #43152]

GC-content

55.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinobacterium zhoushanense CGMCC 1.15341 NCBI: GCA_014641945.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinobacterium zhoushanense CGMCC 1.15341 NCBI: GCA_014641945.1
[Ref.: #69480]	flagellated	yes	89.633	no
[Ref.: #69480]	gram-positive	no	99.166	yes
[Ref.: #69480]	anaerobic	no	98.613	no
[Ref.: #69480]	aerobic	no	52.368	yes
[Ref.: #69480]	halophile	yes	66.033	yes
[Ref.: #69480]	spore-forming	no	95.893	no
[Ref.: #69480]	glucose-util	yes	92.78	yes
[Ref.: #69480]	thermophile	no	98.908	no
[Ref.: #69480]	motile	yes	93.41	yes
[Ref.: #69480]	glucose-ferment	no	74.065	yes

Availability in culture collections External links

[Ref.: #43152]

Culture collection no.

CGMCC 1.15341, KCTC 42782

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacterium zhoushanense sp. nov., isolated from surface seawater.	Han SB, Wang RJ, Yu XY, Su Y, Sun C, Fu GY, Zhang CY, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001213	2016	*
Phylogeny	Marinobacterium boryeongense sp. nov., isolated from seawater.	Kang JY, Kim MJ, Chun J, Son KP, Jahng KY	Int J Syst Evol Microbiol	10.1099/ijsem.0.003184	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43152

Shuai-Bo Han, Rui-Jun Wang, Xiao-Yun Yu, Yue Su, Cong Sun, Ge-Yi Fu, Chong-Ya Zhang, Xu-Fen Zhu and Min Wu: Marinobacterium zhoushanense sp. nov., isolated from surface seawater. IJSEM 66: 3437 - 3442 2016 ( DOI 10.1099/ijsem.0.001213 , PubMed 27265099 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Marinobacterium zhoushanense CGMCC 1.15341

Marinobacterium zhoushanense CGMCC 1.15341

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