Name: Paracoccus acridae SCU-M53
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140628

Type strain:

Species: Paracoccus acridae

Strain Designation: SCU-M53

Culture col. no.: KCTC 42932, CGMCC 1.15419

NCBI tax ID(s): 1795310 (species)

Section

Paracoccus acridae SCU-M53 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from insect Acrida cinerea.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus acridae**
	Full Scientific Name (LPSN)	Paracoccus acridae Zhang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43154]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.988

[Ref.: #43154]	Cell length	0.7-1.7 µm

[Ref.: #43154]	Cell width	0.4-0.6 µm

[Ref.: #43154]	Cell shape	rod-shaped

[Ref.: #43154]	Motility	no

[Ref.: #43154]	Colony color	orange-red
[Ref.: #43154]	Colony shape	circular
[Ref.: #43154]	Cultivation medium used	TSA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43154]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43154]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43154]			optimum	25-30 °C
[Ref.: #43154]			growth	10-40 °C

[Ref.: #43154]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43154]			optimum	6.0-7.5
[Ref.: #43154]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43154]

Oxygen tolerance

aerobe

[Ref.: #43154]	Type of spore	spore
[Ref.: #43154]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43154]		NaCl		growth	0-4	%(w/v)
[Ref.: #43154]		NaCl		optimum	0-1.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43154]	2,3-butanediol ChEBI	-	respiration
[Ref.: #43154]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #43154]	2-oxobutanoate ChEBI	-	respiration
[Ref.: #43154]	2-oxoglutarate ChEBI	+	respiration
[Ref.: #43154]	3-hydroxybutyrate ChEBI	+	respiration
[Ref.: #43154]	4-hydroxy-L-proline ChEBI	-	respiration
[Ref.: #43154]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #43154]	acetate ChEBI	-	respiration
[Ref.: #43154]	adipate ChEBI	-	assimilation
[Ref.: #43154]	alpha-cyclodextrin ChEBI	-	respiration
[Ref.: #43154]	alpha-D-glucose ChEBI	-	respiration
[Ref.: #43154]	alpha-lactose ChEBI	-	respiration
[Ref.: #43154]	arabinose ChEBI	+	assimilation
[Ref.: #43154]	bromosuccinate ChEBI	+	respiration
[Ref.: #43154]	casein	-	hydrolysis
[Ref.: #43154]	cellobiose ChEBI	-	respiration
[Ref.: #43154]	cis-aconitate ChEBI	-	respiration
[Ref.: #43154]	citrate ChEBI	-	assimilation
[Ref.: #43154]	D-alanine ChEBI	+	respiration
[Ref.: #43154]	D-arabitol ChEBI	-	respiration
[Ref.: #43154]	D-fructose ChEBI	+	respiration
[Ref.: #43154]	D-galactonic acid lactone ChEBI	-	respiration
[Ref.: #43154]	D-galactose ChEBI	-	respiration
[Ref.: #43154]	D-galacturonic acid ChEBI	-	respiration
[Ref.: #43154]	D-gluconate ChEBI	-	respiration
[Ref.: #43154]	D-glucosaminic acid ChEBI	-	respiration
[Ref.: #43154]	D-glucose ChEBI	+	fermentation
[Ref.: #43154]	D-glucose 6-phosphate ChEBI	-	respiration
[Ref.: #43154]	D-glucuronate ChEBI	-	respiration
[Ref.: #43154]	D-mannitol ChEBI	-	respiration
[Ref.: #43154]	D-mannose ChEBI	-	respiration
[Ref.: #43154]	D-psicose ChEBI	-	respiration
[Ref.: #43154]	D-saccharate ChEBI	-	respiration
[Ref.: #43154]	D-serine ChEBI	-	respiration
[Ref.: #43154]	decanoate ChEBI	-	assimilation
[Ref.: #43154]	dextrin ChEBI	+	respiration
[Ref.: #43154]	DL-carnitine ChEBI	-	respiration
[Ref.: #43154]	erythritol ChEBI	-	respiration
[Ref.: #43154]	ethanolamine ChEBI	-	respiration
[Ref.: #43154]	formate ChEBI	-	respiration
[Ref.: #43154]	gamma-aminobutyric acid ChEBI	-	respiration
[Ref.: #43154]	gelatin ChEBI	-	hydrolysis
[Ref.: #43154]	gentiobiose ChEBI	-	respiration
[Ref.: #43154]	glucose ChEBI	+	assimilation
[Ref.: #43154]	glucose 1-phosphate ChEBI	-	respiration
[Ref.: #43154]	glucuronamide ChEBI	-	respiration
[Ref.: #43154]	glycerol ChEBI	+	respiration
[Ref.: #43154]	glycogen ChEBI	-	respiration
[Ref.: #43154]	glycyl L-aspartic acid ChEBI	-	respiration
[Ref.: #43154]	glycyl-l-glutamate ChEBI	+/-	respiration
[Ref.: #43154]	inosine ChEBI	-	respiration
[Ref.: #43154]	itaconate ChEBI	-	respiration
[Ref.: #43154]	L-alaninamide ChEBI	-	respiration
[Ref.: #43154]	L-alanine ChEBI	-	respiration
[Ref.: #43154]	L-arabinose ChEBI	+	respiration
[Ref.: #43154]	L-asparagine ChEBI	+	respiration
[Ref.: #43154]	L-aspartate ChEBI	+	respiration
[Ref.: #43154]	L-fucose ChEBI	-	respiration
[Ref.: #43154]	L-glutamate ChEBI	+	respiration
[Ref.: #43154]	L-histidine ChEBI	-	respiration
[Ref.: #43154]	L-leucine ChEBI	-	respiration
[Ref.: #43154]	L-ornithine ChEBI	-	respiration
[Ref.: #43154]	L-phenylalanine ChEBI	-	respiration
[Ref.: #43154]	L-proline-4-nitroanilide	-	respiration
[Ref.: #43154]	L-pyroglutamic acid ChEBI	-	respiration
[Ref.: #43154]	L-rhamnose ChEBI	-	respiration
[Ref.: #43154]	L-serine ChEBI	+/-	respiration
[Ref.: #43154]	L-threonine ChEBI	-	respiration
[Ref.: #43154]	lactate ChEBI	+	respiration
[Ref.: #43154]	lactulose ChEBI	-	respiration
[Ref.: #43154]	malate ChEBI	-	assimilation
[Ref.: #43154]	malonate ChEBI	+	respiration
[Ref.: #43154]	maltose ChEBI	+	assimilation
[Ref.: #43154]	mannitol ChEBI	-	assimilation
[Ref.: #43154]	mannose ChEBI	-	assimilation
[Ref.: #43154]	melibiose ChEBI	-	respiration
[Ref.: #43154]	methyl alpha-D-glucopyranoside ChEBI	-	respiration
[Ref.: #43154]	myo-inositol ChEBI	-	respiration
[Ref.: #43154]	N-acetylgalactosamine ChEBI	-	respiration
[Ref.: #43154]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43154]	nitrate ChEBI	-	reduction
[Ref.: #43154]	phenylacetate ChEBI	+	assimilation
[Ref.: #43154]	phenylethylamine ChEBI	-	respiration
[Ref.: #43154]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43154]	propionate ChEBI	+	respiration
[Ref.: #43154]	putrescine ChEBI	-	respiration
[Ref.: #43154]	quinate ChEBI	-	respiration
[Ref.: #43154]	raffinose ChEBI	-	respiration
[Ref.: #43154]	ribitol ChEBI	-	respiration
[Ref.: #43154]	sebacic acid ChEBI	-	respiration
[Ref.: #43154]	starch ChEBI	+	hydrolysis
[Ref.: #43154]	succinamate ChEBI	+	respiration
[Ref.: #43154]	succinate ChEBI	+	respiration
[Ref.: #43154]	sucrose ChEBI	-	respiration
[Ref.: #43154]	thymidine ChEBI	-	respiration
[Ref.: #43154]	trehalose ChEBI	-	respiration
[Ref.: #43154]	turanose ChEBI	-	respiration
[Ref.: #43154]	tween 40 ChEBI	+	respiration
[Ref.: #43154]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43154]	tween 80 ChEBI	+	respiration
[Ref.: #43154]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43154]	urea ChEBI	-	hydrolysis
[Ref.: #43154]	uridine ChEBI	-	respiration
[Ref.: #43154]	urocanic acid ChEBI	-	respiration
[Ref.: #43154]	xylitol ChEBI	-	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43154]		astaxanthin ChEBI	yes
[Ref.: #43154]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43154]	acid phosphatase	-	3.1.3.2
[Ref.: #43154]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43154]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43154]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43154]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43154]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43154]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43154]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #43154]	beta-galactosidase	-	3.2.1.23
[Ref.: #43154]	beta-glucosidase	-	3.2.1.21
[Ref.: #43154]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43154]	catalase	+	1.11.1.6
[Ref.: #43154]	cystine arylamidase	-	3.4.11.3
[Ref.: #43154]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43154]	esterase (C 4)	+
[Ref.: #43154]	esterase Lipase (C 8)	+
[Ref.: #43154]	leucine arylamidase	+	3.4.11.1
[Ref.: #43154]	lipase (C 14)	-
[Ref.: #43154]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43154]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43154]	protease	-
[Ref.: #43154]	trypsin	-	3.4.21.4
[Ref.: #43154]	urease	-	3.5.1.5
[Ref.: #43154]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43154]

Fatty acid	Percentage
C18:1ω7c	70.4
C16:0	10.6
C10:0 3OH	10.2
C18:0	5
C14:0 3OH	3.5
C14:0	0.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43154]	Sample type/isolated from	insect Acrida cinerea
[Ref.: #43154]	Geographic location (country and/or sea, region)	Chengdu, China
[Ref.: #43154]	Country	China
[Ref.: #43154]	Country ISO 3 Code	CHN
[Ref.: #43154]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT634253 (>99% sequence identity) for Paracoccus acridae from Microbeatlas

Aquatic Samples	379
Soil Samples	403
Animal Samples	2121
Plant Samples	110
Total Samples	3013

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43154]	16S rRNA gene sequences	KT634253	1441	ENA	1795310 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paracoccus acridae CGMCC 1.15419	GCA_014642735	contig	GenBank	1795310 tax ID	*
[Ref.: #66792]	Paracoccus acridae strain CGMCC 1.15419	1795310.3	wgs	PATRIC	1795310 tax ID	*

[Ref.: #43154]

GC-content

60.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paracoccus acridae strain CGMCC 1.15419 PATRIC: 1795310.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paracoccus acridae strain CGMCC 1.15419 PATRIC: 1795310.3
[Ref.: #69480]	motile	no	70.498	yes
[Ref.: #69480]	gram-positive	no	97.639	yes
[Ref.: #69480]	anaerobic	no	98.498	yes
[Ref.: #69480]	aerobic	yes	92.036	yes
[Ref.: #69480]	halophile	no	87.799	yes
[Ref.: #69480]	spore-forming	no	95.522	yes
[Ref.: #69480]	glucose-util	yes	91.673	no
[Ref.: #69480]	flagellated	no	89.985	yes
[Ref.: #69480]	thermophile	no	94.702	yes
[Ref.: #69480]	glucose-ferment	no	81.201	yes

Availability in culture collections External links

[Ref.: #43154]

Culture collection no.

KCTC 42932, CGMCC 1.15419

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus fontiphilus sp. nov., isolated from a freshwater spring.	Sheu SY, Hsieh TY, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002793	2018	*
Phylogeny	Screening cyhalothrin degradation strains from locust epiphytic bacteria and studying Paracoccus acridae SCU-M53 cyhalothrin degradation process.	Tian J, Long X, Zhang S, Qin Q, Gan L, Tian Y	Environ Sci Pollut Res Int	10.1007/s11356-018-1410-y	2018	*
Phylogeny	Paracoccusacridae sp. nov., isolated from the insect Acrida cinerea living in deserted cropland.	Zhang S, Gan L, Qin Q, Long X, Zhang Y, Chu Y, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001222	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43154

Shuai Zhang, Longzhan Gan, Qiumian Qin, Xiufeng Long, Yuqin Zhang, Yiwen Chu and Yongqiang Tian: Paracoccus acridae sp. nov., isolated from the insect Acrida cinerea living in deserted cropland. IJSEM 66: 3492 - 3497 2016 ( DOI 10.1099/ijsem.0.001222 , PubMed 27267079 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Paracoccus acridae strain CGMCC 1.15419

Paracoccus acridae strain CGMCC 1.15419

Change proposal

Change proposal