Name: Chryseomicrobium palamuruense PU1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140621

Type strain:

Species: Chryseomicrobium palamuruense

Strain Designation: PU1

Culture col. no.: NBRC 106750, KCTC 13722, JCM 16712, CCUG 59101

Strain history: P. K. Pindi PU1.

NCBI tax ID(s): 682973 (species)

SI-ID 408620

CCUG 59101

Special Collections

Section

Chryseomicrobium palamuruense PU1 is an aerobe, chemoorganotroph, Gram-positive bacterium that forms circular colonies and was isolated from a sediment sample collected from drainage.

colony-forming
Gram-positive
motile
rod-shaped
aerobe
chemoorganotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Chryseomicrobium*
	Species	**Chryseomicrobium palamuruense**
	Full Scientific Name (LPSN)	Chryseomicrobium palamuruense Pindi et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43143]	Gram stain	positive

[Ref.: #43143]	Cell length	1.6-2.0 µm

[Ref.: #43143]	Cell width	0.6-0.7 µm

[Ref.: #43143]	Cell shape	rod-shaped

[Ref.: #43143]	Motility	yes

[Ref.: #43143]	Colony size	1-2 mm
[Ref.: #43143]	Colony color	cream
[Ref.: #43143]	Colony shape	circular
[Ref.: #43143]	Cultivation medium used	NA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43143]

Culture medium

Nutrient agar (NA)

[Ref.: #43143]

Culture medium growth

[Ref.: #43143]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43143]

Culture medium growth

		Temperature
[Ref.: #43143]	optimum	37 °C
[Ref.: #43143]	growth	18-40 °C
[Ref.: #61818]	growth	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43143]			optimum	8
[Ref.: #43143]			growth	7-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43143]	Oxygen tolerance	aerobe
[Ref.: #61818]	Oxygen tolerance	aerobe

[Ref.: #43143]

Nutrition type

chemoorganotroph

[Ref.: #43143]	Type of spore	endospore
[Ref.: #43143]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43143]		NaCl		maximum	9	%

[Ref.: #67770]

Observation

quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43143]	casein	-	hydrolysis
[Ref.: #43143]	cellobiose ChEBI	+	builds acid from
[Ref.: #43143]	cellobiose ChEBI	+	assimilation
[Ref.: #43143]	citrate ChEBI	+	builds acid from
[Ref.: #43143]	citrate ChEBI	+	assimilation
[Ref.: #43143]	creatine ChEBI	+	builds acid from
[Ref.: #43143]	D-arabinose ChEBI	+	assimilation
[Ref.: #43143]	D-glucose ChEBI	+	builds acid from
[Ref.: #43143]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43143]	erythritol ChEBI	+	builds acid from
[Ref.: #43143]	esculin ChEBI	-	hydrolysis
[Ref.: #43143]	esculin ChEBI	-	assimilation
[Ref.: #43143]	fructose ChEBI	-	assimilation
[Ref.: #43143]	galactitol ChEBI	-	assimilation
[Ref.: #43143]	galactose ChEBI	-	assimilation
[Ref.: #43143]	gelatin ChEBI	-	hydrolysis
[Ref.: #43143]	glucosamine ChEBI	+	assimilation
[Ref.: #43143]	glucose ChEBI	-	fermentation
[Ref.: #43143]	glucose ChEBI	+	assimilation
[Ref.: #43143]	glycerol ChEBI	+	assimilation
[Ref.: #43143]	inulin ChEBI	-	assimilation
[Ref.: #43143]	L-arabinose ChEBI	-	assimilation
[Ref.: #43143]	L-xylose ChEBI	+	builds acid from
[Ref.: #43143]	lactose ChEBI	-	assimilation
[Ref.: #43143]	malonate ChEBI	+	assimilation
[Ref.: #43143]	maltose ChEBI	+	builds acid from
[Ref.: #43143]	maltose ChEBI	-	assimilation
[Ref.: #43143]	mannitol ChEBI	-	assimilation
[Ref.: #43143]	mannose ChEBI	-	assimilation
[Ref.: #43143]	melezitose ChEBI	-	assimilation
[Ref.: #43143]	melibiose ChEBI	+	builds acid from
[Ref.: #43143]	melibiose ChEBI	+	assimilation
[Ref.: #43143]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43143]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #43143]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #43143]	methyl alpha-D-mannoside ChEBI	-	assimilation
[Ref.: #43143]	myo-inositol ChEBI	+	builds acid from
[Ref.: #43143]	myo-inositol ChEBI	-	assimilation
[Ref.: #43143]	nitrate ChEBI	-	reduction
[Ref.: #43143]	phenylalanine ChEBI	+	builds acid from
[Ref.: #43143]	raffinose ChEBI	+	builds acid from
[Ref.: #43143]	raffinose ChEBI	-	assimilation
[Ref.: #43143]	rhamnose ChEBI	+	builds acid from
[Ref.: #43143]	rhamnose ChEBI	+	assimilation
[Ref.: #43143]	rhamnose ChEBI	-	assimilation
[Ref.: #43143]	ribitol ChEBI	-	assimilation
[Ref.: #43143]	ribose ChEBI	+	assimilation
[Ref.: #43143]	salicin ChEBI	-	assimilation
[Ref.: #43143]	sodium gluconate ChEBI	+	builds acid from
[Ref.: #43143]	sodium gluconate ChEBI	-	assimilation
[Ref.: #43143]	sorbitol ChEBI	-	assimilation
[Ref.: #43143]	sorbose ChEBI	+	builds acid from
[Ref.: #43143]	sorbose ChEBI	-	assimilation
[Ref.: #43143]	starch ChEBI	+	builds acid from
[Ref.: #43143]	starch ChEBI	-	hydrolysis
[Ref.: #43143]	sucrose ChEBI	-	assimilation
[Ref.: #43143]	trehalose ChEBI	-	assimilation
[Ref.: #43143]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43143]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43143]	urea ChEBI	+	hydrolysis
[Ref.: #43143]	xylitol ChEBI	-	assimilation
[Ref.: #43143]	xylose ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43143]	amikacin ChEBI	yes	30	µg (disc)
[Ref.: #43143]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43143]	cefoperazone ChEBI	yes	75	µg (disc)
[Ref.: #43143]	cefotaxime ChEBI	yes	30	µg (disc)
[Ref.: #43143]	cefuroxime ChEBI	yes	30	µg (disc)
[Ref.: #43143]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43143]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43143]	co-trimoxazole ChEBI	yes	25	µg (disc)
[Ref.: #43143]	colistin ChEBI				yes	10	µg (disc)
[Ref.: #43143]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43143]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43143]	lincomycin ChEBI	yes	2	µg (disc)
[Ref.: #43143]	lomefloxacin ChEBI	yes	30	µg (disc)
[Ref.: #43143]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #43143]	nitrofurantoin ChEBI	yes	300	µg (disc)
[Ref.: #43143]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #43143]	penicillin g ChEBI	yes	10	µg (disc)
[Ref.: #43143]	roxithromycin ChEBI	yes	30	µg (disc)
[Ref.: #43143]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43143]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43143]	tobramycin ChEBI	yes	10	µg (disc)
[Ref.: #43143]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43143]	acetoin ChEBI	no
[Ref.: #43143]	hydrogen sulfide ChEBI	no
[Ref.: #43143]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43143]		acetoin ChEBI	-
[Ref.: #43143]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43143]	amylase	-
[Ref.: #43143]	beta-galactosidase	-	3.2.1.23
[Ref.: #43143]	catalase	+	1.11.1.6
[Ref.: #43143]	cellulase	-	3.2.1.4
[Ref.: #43143]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43143]	gelatinase	-
[Ref.: #43143]	lipase	+
[Ref.: #43143]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43143]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43143]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #43143]	phosphatase	+
[Ref.: #43143]	protease	-
[Ref.: #43143]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43143]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43143]

Fatty acid	Percentage
C15:0 iso	48.7
C16:0 iso	11.9
C16:1ω7c alcohol	11.8
C15:0 anteiso	7.3
C17:0 iso	5.3
C17:0 anteiso	2.4
C17:1 iso ω10c	2.4
C16:1 11c	2.2
C17:1 iso I /C17:1 anteiso B	1.5
C16:0	1.1
C14:0	0.4
C16:1ω7c / C16:1ω6c	0.2
C18:0 anteiso / C18:2ω6,9c	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43143]	Sample type/isolated from	a sediment sample collected from drainage
[Ref.: #43143]	Geographic location (country and/or sea, region)	Mahabubnagar district, T.S., India
[Ref.: #43143]	Country	India
[Ref.: #43143]	Country ISO 3 Code	IND
[Ref.: #43143]	Continent	Asia
[Ref.: #43143]	Geographic location	16.0000°/77.0000°

[Ref.: #61818]	Sample type/isolated from	Fresh water sediment
[Ref.: #61818]	Sampling date	2009-08-17
[Ref.: #61818]	Geographic location (country and/or sea, region)	Andrhra Pradesh,Mahabubnagar
[Ref.: #61818]	Country	India
[Ref.: #61818]	Country ISO 3 Code	IND
[Ref.: #61818]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment sample collected from a drainage near hostel of Palamuru University
[Ref.: #67770]	Geographic location (country and/or sea, region)	Mahabubnagar district, T.S
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN555708 (>99% sequence identity) for Planococcaceae from Microbeatlas

Aquatic Samples	124
Soil Samples	56
Animal Samples	360
Plant Samples	6
Total Samples	546

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43143]	Bacillus sp. PU1 partial 16S rRNA gene, strain PU1	FN555708	1502	GenBank ENA	682973 tax ID

[Ref.: #67770]

GC-content

48.5 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43143]

Culture collection no.

NBRC 106750, KCTC 13722, JCM 16712, CCUG 59101

[Ref.: #96757]

SI-ID 408620

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseomicrobium palamuruense sp. nov., a haloalkalitolerant bacterium isolated from a sediment sample.	Pindi PK, Ashwitha K, Rani AS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001256	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43143

Pavan Kumar Pindi, Kodaparthi Ashwitha and A. Swaroopa Rani: Chryseomicrobium palamuruense sp. nov., a haloalkalitolerant bacterium isolated from a sediment sample. IJSEM 66: 3731 - 3736 2016 ( DOI 10.1099/ijsem.0.001256 , PubMed 27373687 )

#61818 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59101
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96757

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408620.1 )

* These data were automatically processed and therefore are not curated

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