Name: Marinicrinis sediminis NC2-42
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140620

Type strain:

Species: Marinicrinis sediminis

Strain Designation: NC2-42

Culture col. no.: KCTC 33676, MCCC 1K01238

Strain history: <- Zongjun Du, Shandong Univ.

NCBI tax ID(s): 1652465 (species)

Section

Marinicrinis sediminis NC2-42 is a facultative anaerobe, mesophilic, Gram-variable bacterium that forms circular colonies and was isolated from marine sediment.

colony-forming
Gram-variable
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Marinicrinis*
	Species	**Marinicrinis sediminis**
	Full Scientific Name (LPSN)	Marinicrinis sediminis Guo et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43142]	Gram stain	variable
[Ref.: #67771]	Gram stain	variable

[Ref.: #43142]	Cell length	2.0-10.0 µm

[Ref.: #43142]	Cell width	0.3-0.5 µm

[Ref.: #43142]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	filament-shaped

[Ref.: #43142]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #43142]	Flagellum arrangement	peritrichous

[Ref.: #43142]	Colony color	yellow
[Ref.: #43142]	Colony shape	circular
[Ref.: #43142]	Incubation period	2 days
[Ref.: #43142]	Cultivation medium used	Marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43142]

Culture medium

Marine agar (MA)

[Ref.: #43142]

Culture medium growth

		Temperature
[Ref.: #43142]	optimum	37 °C
[Ref.: #43142]	growth	16-45 °C
[Ref.: #67771]	growth	37-45 °C

[Ref.: #43142]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43142]			optimum	7.5
[Ref.: #43142]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43142]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43142]		NaCl		growth	0-8.0	%(w/v)
[Ref.: #43142]		NaCl		optimum	2.0-3.0	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43142]	2-oxoglutarate ChEBI	+	respiration
[Ref.: #43142]	acetoacetate ChEBI	-	assimilation
[Ref.: #43142]	amygdalin ChEBI	+	builds acid from
[Ref.: #43142]	arbutin ChEBI	-	builds acid from
[Ref.: #43142]	cellobiose ChEBI	+	builds acid from
[Ref.: #43142]	citrate ChEBI	-	assimilation
[Ref.: #43142]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43142]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43142]	D-fructose ChEBI	+	builds acid from
[Ref.: #43142]	D-fructose 6-phosphate ChEBI	+	respiration
[Ref.: #43142]	D-fucose ChEBI	-	builds acid from
[Ref.: #43142]	D-galactose ChEBI	+	builds acid from
[Ref.: #43142]	D-glucose ChEBI	+	builds acid from
[Ref.: #43142]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43142]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43142]	D-mannose ChEBI	+	builds acid from
[Ref.: #43142]	D-ribose ChEBI	-	builds acid from
[Ref.: #43142]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43142]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43142]	D-xylose ChEBI	-	builds acid from
[Ref.: #43142]	erythritol ChEBI	-	builds acid from
[Ref.: #43142]	esculin ChEBI	+	builds acid from
[Ref.: #43142]	galactitol ChEBI	-	builds acid from
[Ref.: #43142]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43142]	glucuronamide ChEBI	+	respiration
[Ref.: #43142]	glycerol ChEBI	-	builds acid from
[Ref.: #43142]	glycogen ChEBI	+	builds acid from
[Ref.: #43142]	inulin ChEBI	+	builds acid from
[Ref.: #43142]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43142]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43142]	L-fucose ChEBI	-	builds acid from
[Ref.: #43142]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43142]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43142]	L-xylose ChEBI	-	builds acid from
[Ref.: #43142]	lactose ChEBI	-	builds acid from
[Ref.: #43142]	maltose ChEBI	+	builds acid from
[Ref.: #43142]	melezitose ChEBI	-	builds acid from
[Ref.: #43142]	melibiose ChEBI	-	builds acid from
[Ref.: #43142]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43142]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43142]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43142]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43142]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43142]	nitrate ChEBI	-	reduction
[Ref.: #43142]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43142]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43142]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43142]	raffinose ChEBI	-	builds acid from
[Ref.: #43142]	ribitol ChEBI	-	builds acid from
[Ref.: #43142]	salicin ChEBI	+	builds acid from
[Ref.: #43142]	starch ChEBI	+	hydrolysis
[Ref.: #43142]	starch ChEBI	+	builds acid from
[Ref.: #43142]	sucrose ChEBI	+	builds acid from
[Ref.: #43142]	trehalose ChEBI	+	builds acid from
[Ref.: #43142]	turanose ChEBI	+	builds acid from
[Ref.: #43142]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43142]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43142]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43142]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43142]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43142]	acetylspiramycin ChEBI	yes	30	µg
[Ref.: #43142]	ampicillin ChEBI	yes	10	µg
[Ref.: #43142]	cefotaxime ChEBI	yes	30	µg
[Ref.: #43142]	ceftriaxone ChEBI	yes	30	µg
[Ref.: #43142]	chloramphenicol ChEBI	yes	30	µg
[Ref.: #43142]	clindamycin ChEBI	yes	30	µg
[Ref.: #43142]	erythromycin ChEBI	yes	15	µg
[Ref.: #43142]	gentamicin ChEBI	yes	10	µg
[Ref.: #43142]	kanamycin ChEBI	yes	30	µg
[Ref.: #43142]	lincomycin ChEBI	yes	2	µg
[Ref.: #43142]	nalidixic acid ChEBI	yes	30	µg
[Ref.: #43142]	neomycin ChEBI	yes	30	µg
[Ref.: #43142]	norfloxacin ChEBI	yes	30	µg
[Ref.: #43142]	ofloxacin ChEBI	yes	5	µg
[Ref.: #43142]	penicillin ChEBI	yes	10	µg
[Ref.: #43142]	rifampicin ChEBI	yes	5	µg
[Ref.: #43142]	streptomycin ChEBI	yes	10	µg
[Ref.: #43142]	sulfamethoxydiazine ChEBI	yes	5	µg
[Ref.: #43142]	tetracycline ChEBI	yes	30	µg
[Ref.: #43142]	tobramycin ChEBI	yes	10	µg
[Ref.: #43142]	vancomycin ChEBI	yes	30	µg
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43142]	acetoin ChEBI	no
[Ref.: #43142]	hydrogen sulfide ChEBI	no
[Ref.: #43142]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43142]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43142]	acid phosphatase	-	3.1.3.2
[Ref.: #43142]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43142]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43142]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43142]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43142]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43142]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #43142]	beta-galactosidase	-	3.2.1.23
[Ref.: #43142]	beta-glucosidase	-	3.2.1.21
[Ref.: #43142]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43142]	catalase	-	1.11.1.6
[Ref.: #43142]	chymotrypsin	-	3.4.4.5
[Ref.: #43142]	cystine arylamidase	-	3.4.11.3
[Ref.: #43142]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43142]	esterase (C 4)	-
[Ref.: #43142]	esterase Lipase (C 8)	+
[Ref.: #43142]	gelatinase	+/-
[Ref.: #43142]	leucine arylamidase	+	3.4.11.1
[Ref.: #43142]	lipase (C 14)	-
[Ref.: #43142]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43142]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43142]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43142]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43142]	trypsin	-	3.4.21.4
[Ref.: #43142]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43142]	urease	-	3.5.1.5
[Ref.: #43142]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43142]

Fatty acid	Percentage
C15:0 anteiso	30.37
C16:0 iso	18.05
C16:0	13.04
C16:1ω11c	9.67
C16:1ω7c alcohol	7.28
C15:0 iso	5.1
C17:0 anteiso	4.69
C17:1 iso I /C17:1 anteiso B	2.4
C17:1 iso ω10c	2.32
C17:0 iso	2.17
C14:0 iso	1.64
C14:0	1.36
C15:0	1.35

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43142]	Sample type/isolated from	marine sediment
[Ref.: #43142]	Geographic location (country and/or sea, region)	Weihai, China
[Ref.: #43142]	Country	China
[Ref.: #43142]	Country ISO 3 Code	CHN
[Ref.: #43142]	Continent	Asia
[Ref.: #43142]	Geographic location	37.0000°/121.0000°

[Ref.: #67771]	Sample type/isolated from	From marine sediment from Weihai
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR604722 (>99% sequence identity) for Marinicrinis sediminis subclade from Microbeatlas

Aquatic Samples	60
Soil Samples	45
Animal Samples	48
Plant Samples	22
Total Samples	175

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43142]	16S rRNA gene sequences	KR604722	1476	ENA	1652465 tax ID

[Ref.: #43142]	GC-content	58.11 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	58.11 mol%

Availability in culture collections External links

[Ref.: #43142]

Culture collection no.

KCTC 33676, MCCC 1K01238

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinicrinis sediminis gen. nov., sp. nov., isolated from marine sediment.	Guo LY, Xia J, Ling SK, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001257	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43142

Ling-Yun Guo, Jun Xia, Si-Kai Ling, Guan-Jun Chen and Zong-Jun Du: Marinicrinis sediminis gen. nov., sp. nov., isolated from marine sediment. IJSEM 66: 3725 - 3730 2016 ( DOI 10.1099/ijsem.0.001257 , PubMed 27373748 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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