Name: Colwellia sediminilitoris YSM-23
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140622

Type strain:

Species: Colwellia sediminilitoris

Strain Designation: YSM-23

Culture col. no.: KCTC 52213, NBRC 111994

NCBI tax ID(s): 1820336 (species)

Section

Colwellia sediminilitoris YSM-23 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from tidal flat.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Colwellia*
	Species	**Colwellia sediminilitoris**
	Full Scientific Name (LPSN)	Colwellia sediminilitoris Park et al. 2016

Synonym

Cognaticolwellia sediminilitoris

Information on morphological and physiological properties Morphology

[Ref.: #43146]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #43146]	Cell length	0.3-6.0 µm

[Ref.: #43146]	Cell width	0.2-0.6 µm

[Ref.: #43146]	Cell shape	rod-shaped

[Ref.: #43146]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.589

[Ref.: #43146]	Colony size	0.5-1.0 mm
[Ref.: #43146]	Colony color	greyish yellow
[Ref.: #43146]	Colony shape	circular
[Ref.: #43146]	Incubation period	5 days
[Ref.: #43146]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43146]

Culture medium

Marine agar (MA)

[Ref.: #43146]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43146]	no	growth	35 °C
[Ref.: #43146]		growth	4-30 °C
[Ref.: #43146]		optimum	30 °C

[Ref.: #43146]

Temperature range

mesophilic

	Kind of pH		pH
[Ref.: #43146]		optimum	7.0-8.0
[Ref.: #43146]		growth	5.5
[Ref.: #43146]	no	growth	5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43146]

Oxygen tolerance

aerobe

[Ref.: #43146]	Type of spore	spore
[Ref.: #43146]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43146]		NaCl		growth	1.0-5.0	%(w/v)
[Ref.: #43146]		NaCl		optimum	1.0-2.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43146]	acetate ChEBI	-	carbon source
[Ref.: #43146]	benzoate ChEBI	-	carbon source
[Ref.: #43146]	casein	+	hydrolysis
[Ref.: #43146]	cellobiose ChEBI	-	carbon source
[Ref.: #43146]	citrate ChEBI	-	carbon source
[Ref.: #43146]	D-fructose ChEBI	-	carbon source
[Ref.: #43146]	D-galactose ChEBI	-	carbon source
[Ref.: #43146]	D-glucose ChEBI	-	carbon source
[Ref.: #43146]	D-mannose ChEBI	-	carbon source
[Ref.: #43146]	D-trehalose ChEBI	-	carbon source
[Ref.: #43146]	D-xylose ChEBI	-	carbon source
[Ref.: #43146]	esculin ChEBI	-	hydrolysis
[Ref.: #43146]	formate ChEBI	-	carbon source
[Ref.: #43146]	gelatin ChEBI	+	hydrolysis
[Ref.: #43146]	hydrogen sulfide ChEBI	+	hydrolysis
[Ref.: #43146]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #43146]	L-arabinose ChEBI	-	carbon source
[Ref.: #43146]	L-glutamate ChEBI	-	carbon source
[Ref.: #43146]	L-malate ChEBI	-	carbon source
[Ref.: #43146]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #43146]	magnesium(2+) ChEBI	+	required for growth
[Ref.: #43146]	maltose ChEBI	-	carbon source
[Ref.: #43146]	nitrate ChEBI	+	reduction
[Ref.: #43146]	pyruvate ChEBI	-	carbon source
[Ref.: #43146]	salicin ChEBI	-	carbon source
[Ref.: #43146]	starch ChEBI	+	hydrolysis
[Ref.: #43146]	succinate ChEBI	-	carbon source
[Ref.: #43146]	sucrose ChEBI	-	carbon source
[Ref.: #43146]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43146]	urea ChEBI	-	hydrolysis
[Ref.: #43146]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43146]	ampicillin ChEBI	yes	30	µg (disc)
[Ref.: #43146]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43146]	cephalothin ChEBI	yes	30	µg (disc)
[Ref.: #43146]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #43146]	gentamicin ChEBI	yes	30	µg (disc)
[Ref.: #43146]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43146]	lincomycin ChEBI				yes	15	µg (disc)
[Ref.: #43146]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43146]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43146]	oleandomycin ChEBI	yes	15	µg (disc)
[Ref.: #43146]	penicillin g ChEBI				yes	20	Unit
[Ref.: #43146]	polymyxin b ChEBI	yes	100	Unit
[Ref.: #43146]	streptomycin ChEBI	yes	50	µg (disc)
[Ref.: #43146]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43146]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43146]	acid phosphatase	-	3.1.3.2
[Ref.: #43146]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43146]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43146]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43146]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43146]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43146]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43146]	beta-galactosidase	-	3.2.1.23
[Ref.: #43146]	beta-glucosidase	-	3.2.1.21
[Ref.: #43146]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43146]	catalase	+	1.11.1.6
[Ref.: #43146]	cystine arylamidase	-	3.4.11.3
[Ref.: #43146]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43146]	esterase (C 4)	+
[Ref.: #43146]	esterase Lipase (C 8)	+
[Ref.: #43146]	leucine arylamidase	+	3.4.11.1
[Ref.: #43146]	lipase (C 14)	-
[Ref.: #43146]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43146]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43146]	trypsin	-	3.4.21.4
[Ref.: #43146]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43146]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	37.8
C15:1ω8c	11.3
C16:0	9.1
C14:0	6.3
C17:1ω8c	5.4
C16:1ω9c	4.1
C16:0 iso	3.2
C15:1ω6c	2.9
C11:0 3OH	2.5
C18:1ω7c	2.5
C12:0 3OH	2.2
C10:0	1.8
C10:0 3OH	1.6
C14:0 iso	1.1
C14:1ω5c	1.1

Metadata FA analysis

Reference

[Ref.: #43146]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	37.5
C16:0	9.8
C15:1ω8c	8.6
C14:0	5.8
C17:1ω8c	5.4
C16:0 iso	4.3
C16:1ω9c	4
C12:0 3OH	3.1
C18:1ω7c	2.9
C11:0 3OH	2.7
C15:1ω6c	2.3
C10:0 3OH	2.2
C10:0	2.1
C12:0 iso 3OH	1.2
C14:0 iso	1.1
C14:1ω5c	1.1

Metadata FA analysis

Reference

[Ref.: #43146]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	29
C15:1ω8c	11.4
C16:0 iso	10
C17:1ω8c	7.8
C16:0	7.6
C14:0	3.7
C16:1ω9c	3.3
C11:0 3OH	2.9
C15:1ω6c	2.7
C12:0 iso 3OH	2.6
C12:0 3OH	2.4
C14:0 iso	2.1
C18:1ω7c	1.9
C10:0	1.9
C10:0 3OH	1.6
C17:0	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43146]	Sample type/isolated from	tidal flat
[Ref.: #43146]	Geographic location (country and/or sea, region)	Yeosu on the South Sea, South Korea
[Ref.: #43146]	Country	Republic of Korea
[Ref.: #43146]	Country ISO 3 Code	KOR
[Ref.: #43146]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU696539 (>99% sequence identity) for Colwellia from Microbeatlas

Aquatic Samples	451
Soil Samples	4
Animal Samples	44
Plant Samples	5
Total Samples	504

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43146]	16S rRNA gene sequences	KU696539	1465	ENA	1820336 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cognaticolwellia sediminilitoris KCTC 52213	GCA_002104535	scaffold	GenBank	1820336 tax ID	*
[Ref.: #66792]	Colwellia sediminilitoris strain KCTC 52213	1820336.3	wgs	PATRIC	1820336 tax ID	*
[Ref.: #66792]	Colwellia sediminilitoris KCTC 52213	2843559686	draft	JGI IMG/M	1820336 tax ID	*

[Ref.: #43146]

GC-content

43.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Colwellia sediminilitoris strain KCTC 52213 PATRIC: 1820336.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cognaticolwellia sediminilitoris KCTC 52213 NCBI: GCA_002104535.1
[Ref.: #69480]	flagellated	yes	63.232	no
[Ref.: #69480]	gram-positive	no	99.068	yes
[Ref.: #69480]	anaerobic	no	99.22	yes
[Ref.: #69480]	halophile	yes	56.714	no
[Ref.: #69480]	spore-forming	no	97.875	yes
[Ref.: #69480]	thermophile	no	98.925	yes
[Ref.: #69480]	glucose-util	yes	82.267	yes
[Ref.: #69480]	aerobic	yes	84.66	yes
[Ref.: #69480]	motile	yes	87.922	yes
[Ref.: #69480]	glucose-ferment	no	76.387	no

Availability in culture collections External links

[Ref.: #43146]

Culture collection no.

KCTC 52213, NBRC 111994

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Colwellia sediminilitoris sp. nov., isolated from a tidal flat.	Park S, Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001183	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43146

Sooyeon Park, Yong-Taek Jung and Jung-Hoon Yoon: Colwellia sediminilitoris sp. nov., isolated from a tidal flat. IJSEM 66: 3258 - 3263 2016 ( DOI 10.1099/ijsem.0.001183 , PubMed 27220830 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Colwellia sediminilitoris strain KCTC 52213

Cognaticolwellia sediminilitoris KCTC 52213

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