Acinetobacter defluvii (KCTC 52503, GDMCC 1.1101, CCTCC AB 2016203)

Name: Acinetobacter defluvii (KCTC 52503, GDMCC 1.1101, CCTCC AB 2016203)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140606

Type strain

Strain Designation WCHA30

Culture col. no. KCTC 52503 GDMCC 1.1101 CCTCC AB 2016203 DSM 107594 WCHA30

NCBI tax ID(s) 1871111

Special Collections DSMZ KCTC Literature strains

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Acinetobacter defluvii WCHA30 is an obligate aerobe, Gram-negative, coccus-shaped prokaryote that forms circular colonies and was isolated from hospital sewage.

Gram-negative coccus-shaped colony-forming obligate aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406554

KCTC 52503,DSM 107594

@ref 20215

Last LPSN update 2025-12-16 10:03:38

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Acinetobacter

Species Acinetobacter defluvii

Full scientific name Acinetobacter defluvii Hu et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
43264	negative	0.7-1.0 µm	0.6-0.9 µm	coccus-shaped
125438	negative					98

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43264	0.8-1.2 mm	light yellow	circular	1 day	TSA

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
43264	Trypticase Soy Agar (TSA)
43264	LB (Luria-Bertani) MEDIUM
43264	brain heart infusion agar
43264	Müller-Hinton agar
64855	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
64855	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43264	negative	growth	41-44
43264	positive	growth	20-37
64855	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43264	positive	growth	5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43264	obligate aerobe
125439	obligate aerobe	93.9

Spore formation

@ref	Type of spore	Spore formation	Confidence
43264	spore
125438			94.907

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43264	NaCl	positive	growth	0-3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43264	62064 ChEBI	2,3-butanediol	-	carbon source
43264	17879 ChEBI	4-hydroxybenzoate	-	carbon source
43264	39150 ChEBI	4-oxopentanoate	-	carbon source
43264	30089 ChEBI	acetate	+	carbon source
43264	17128 ChEBI	adipate	-	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
43264	78208 ChEBI	azelaate	-	carbon source
43264	16150 ChEBI	benzoate	+	carbon source
43264	16958 ChEBI	beta-alanine	+	carbon source
43264	30719 ChEBI	citraconate	-	carbon source
43264	16947 ChEBI	citrate	-	carbon source
43264	8391 ChEBI	D-gluconate	-	carbon source
43264	17634 ChEBI	D-glucose	-	builds acid from
43264	17634 ChEBI	D-glucose	-	carbon source
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
43264	15588 ChEBI	D-malate	-	carbon source
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
43264	16988 ChEBI	D-ribose	-	carbon source
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
43264	16236 ChEBI	ethanol	+	carbon source
43264	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
43264	5291 ChEBI	gelatin	-	hydrolysis
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
43264	58044 ChEBI	gentisate	-	carbon source
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
43264	30921 ChEBI	glutarate	-	carbon source
43264	18295 ChEBI	histamine	-	carbon source
43264	30849 ChEBI	L-arabinose	-	carbon source
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
43264	16467 ChEBI	L-arginine	-	carbon source
43264	29991 ChEBI	L-aspartate	-	carbon source
43264	29985 ChEBI	L-glutamate	-	carbon source
43264	15971 ChEBI	L-histidine	-	carbon source
43264	15603 ChEBI	L-leucine	-	carbon source
43264	15729 ChEBI	L-ornithine	-	carbon source
43264	17295 ChEBI	L-phenylalanine	-	carbon source
43264	30924 ChEBI	L-tartrate	-	carbon source
43264	24996 ChEBI	lactate	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
43264	15792 ChEBI	malonate	-	carbon source
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
43264	18401 ChEBI	phenylacetate	+	carbon source
43264	17148 ChEBI	putrescine	-	carbon source
43264	15708 ChEBI	trans-aconitate	-	carbon source
43264	62517 ChEBI	tricarballylate	-	carbon source
43264	18123 ChEBI	trigonelline	+	carbon source
43264	16765 ChEBI	tryptamine	-	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
43264	53423 ChEBI	tween 40	+	hydrolysis
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
43264	catalase	+	1.11.1.6
43264	cytochrome oxidase	-	1.9.3.1
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ppGpp biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	glycine betaine biosynthesis	100	5 of 5
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	palmitate biosynthesis	100	22 of 22
66794	phenylmercury acetate degradation	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	vitamin B1 metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	propanol degradation	85.71	6 of 7
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	vitamin B6 metabolism	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	gallate degradation	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	phenylalanine metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	lactate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	3-phenylpropionate degradation	73.33	11 of 15
66794	purine metabolism	72.34	68 of 94
66794	cysteine metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	flavin biosynthesis	66.67	10 of 15
66794	tryptophan metabolism	65.79	25 of 38
66794	non-pathway related	65.79	25 of 38
66794	phenol degradation	65	13 of 20
66794	pentose phosphate pathway	63.64	7 of 11
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	sulfate reduction	61.54	8 of 13
66794	lipid metabolism	61.29	19 of 31
66794	Entner Doudoroff pathway	60	6 of 10
66794	pyrimidine metabolism	60	27 of 45
66794	lysine metabolism	59.52	25 of 42
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	d-mannose degradation	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	proline metabolism	54.55	6 of 11
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	urea cycle	53.85	7 of 13
66794	glycolysis	52.94	9 of 17
66794	oxidative phosphorylation	52.75	48 of 91
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	arginine metabolism	50	12 of 24
66794	glutathione metabolism	50	7 of 14
66794	tyrosine metabolism	50	7 of 14
66794	ribulose monophosphate pathway	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	glycine metabolism	40	4 of 10
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	degradation of sugar alcohols	37.5	6 of 16
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	ketogluconate metabolism	37.5	3 of 8
66794	nitrate assimilation	33.33	3 of 9
66794	pantothenate biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	coenzyme M biosynthesis	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	vitamin B12 metabolism	29.41	10 of 34
66794	metabolism of disaccharids	27.27	3 of 11
66794	glycogen biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	vitamin E metabolism	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	alginate biosynthesis	25	1 of 4
66794	ascorbate metabolism	22.73	5 of 22
66794	arachidonic acid metabolism	22.22	4 of 18
66794	degradation of hexoses	22.22	4 of 18

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
64855	+	-	-	-	-	-	-	+/-	+/-	-	-	-	-	-	-	+	-	+	-	-	-
64855	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Sewage sludge
#Environmental	#Aquatic	-
#Infection	#Medical environment	#Clinic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Sampling date
43264	hospital sewage	Chengdu, China	China	CHN	Asia			2015-11
64855	wastewater treatment plant of hospital	Chengdu	China	CHN	Asia	30.6667	104.067 30.6667/104.067

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64855	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM170461v3 assembly for Acinetobacter defluvii WCHA30	complete	GCA_001704615	1871111.9	8114649456	1871111	97.29
66792	Acinetobacter defluvii WCHA30	complete			2767802242	1871111	94.76

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43264	Acinetobacter defluvii strain WCHA30 16S ribosomal RNA gene, complete sequence	KY435933	1546		1871111

GC content

43264

GC-content (mol%)38

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acinetobacter defluvii WCHA30
NCBI: GCA_001704615

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	85.60	no
125439	motility	BacteriaNetⓘ	no	56.00	no
125439	gram_stain	BacteriaNetⓘ	negative	76.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acinetobacter defluvii WCHA30
NCBI: GCA_001704615.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	yes
125438	anaerobic	anaerobicⓘ	no	96.00	yes
125438	aerobic	aerobicⓘ	yes	89.00	yes
125438	spore-forming	spore-formingⓘ	no	94.91	no
125438	thermophilic	thermophileⓘ	no	98.48	yes
125438	flagellated	motile2+ⓘ	no	80.34	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acinetobacter pullicarnis sp. nov. isolated from chicken meat.	Han RH, Lee JE, Yoon SH, Kim GB	Arch Microbiol	10.1007/s00203-019-01785-y	2019
Phylogeny	Acinetobacter defluvii sp. nov., recovered from hospital sewage.	Hu Y, Feng Y, Zhang X, Zong Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001847	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43264	Yiyi Hu, Yu Feng, Xiaoxia Zhang and Zhiyong Zong: Acinetobacter defluvii sp. nov., recovered from hospital sewage. IJSEM 67: 1709 - 1713 2017 ( DOI 10.1099/ijsem.0.001847 , PubMed 28211316 )
#64855	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107594
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68369	Automatically annotated from API 20NE .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acinetobacter defluvii (KCTC 52503, GDMCC 1.1101, CCTCC AB 2016203)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001704615

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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