Name: Pseudothioclava arenosa KCTC 52190
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140607

Type strain:

Species: Pseudothioclava arenosa

Culture col. no.: KCTC 52190, NBRC 111989, DSM 108277, CAU 1312

Strain history: <- Wonyong Kim, Chung-Ang Univ..

NCBI tax ID(s): 1795308 (species)

SI-ID 405933

DSM 108277

Section

Pseudothioclava arenosa KCTC 52190 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from sea sand sample.

colony-forming
Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Pseudothioclava*
	Species	**Pseudothioclava arenosa**
	Full Scientific Name (LPSN)	Pseudothioclava arenosa (Thongphrom et al. 2017) Kim and Lee 2020

Synonym

Thioclava arenosa

Information on morphological and physiological properties Morphology

[Ref.: #43257]	Gram stain	negative

[Ref.: #43257]	Cell length	1.5-3.1 µm

[Ref.: #43257]	Cell width	0.1-0.4 µm

[Ref.: #43257]	Cell shape	rod-shaped

[Ref.: #43257]	Motility	no

[Ref.: #43257]	Colony color	pale pinkish
[Ref.: #43257]	Colony shape	circular
[Ref.: #43257]	Incubation period	5 days
[Ref.: #43257]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43257]

Culture medium

Marine agar (MA)

[Ref.: #43257]

Culture medium growth

[Ref.: #64856]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #64856]

Culture medium growth

[Ref.: #64856]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64856]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43257]	optimum	30 °C
[Ref.: #43257]	growth	20-40 °C
[Ref.: #64856]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #43257]	Temperature range	mesophilic
[Ref.: #64856]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43257]			optimum	6.5
[Ref.: #43257]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43257]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43257]	Type of spore	spore
[Ref.: #43257]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43257]		NaCl		growth	1-4	%(w/v)
[Ref.: #43257]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43257]	adipate ChEBI	-	assimilation
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43257]	casein	-	hydrolysis
[Ref.: #43257]	cellobiose ChEBI	-	builds acid from
[Ref.: #43257]	citrate ChEBI	-	hydrolysis
[Ref.: #43257]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43257]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43257]	D-fructose ChEBI	-	builds acid from
[Ref.: #43257]	D-fucose ChEBI	-	builds acid from
[Ref.: #43257]	D-galactose ChEBI	-	builds acid from
[Ref.: #43257]	D-glucose ChEBI	+	fermentation
[Ref.: #43257]	D-glucose ChEBI	+	assimilation
[Ref.: #43257]	D-glucose ChEBI	-	builds acid from
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #43257]	D-mannitol ChEBI	-	assimilation
[Ref.: #43257]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #43257]	D-mannose ChEBI	-	assimilation
[Ref.: #43257]	D-mannose ChEBI	-	builds acid from
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #43257]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43257]	decanoate ChEBI	-	assimilation
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43257]	erythritol ChEBI	-	builds acid from
[Ref.: #43257]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43257]	esculin ferric citrate	-	builds acid from
[Ref.: #43257]	galactitol ChEBI	-	builds acid from
[Ref.: #43257]	gelatin ChEBI	-	hydrolysis
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #43257]	glycerol ChEBI	-	builds acid from
[Ref.: #43257]	inulin ChEBI	-	builds acid from
[Ref.: #43257]	L-arabinose ChEBI	-	assimilation
[Ref.: #43257]	L-arabinose ChEBI	+	builds acid from
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #43257]	L-fucose ChEBI	-	builds acid from
[Ref.: #43257]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43257]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43257]	lactose ChEBI	-	builds acid from
[Ref.: #43257]	malate ChEBI	-	assimilation
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #43257]	maltose ChEBI	-	assimilation
[Ref.: #43257]	maltose ChEBI	-	builds acid from
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #43257]	melibiose ChEBI	-	builds acid from
[Ref.: #43257]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43257]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43257]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43257]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #43257]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #43257]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43257]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43257]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43257]	ribitol ChEBI	-	builds acid from
[Ref.: #43257]	ribose ChEBI	-	builds acid from
[Ref.: #43257]	salicin ChEBI	-	builds acid from
[Ref.: #43257]	starch ChEBI	-	builds acid from
[Ref.: #43257]	sucrose ChEBI	-	builds acid from
[Ref.: #43257]	trehalose ChEBI	-	builds acid from
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #43257]	turanose ChEBI	-	builds acid from
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43257]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43257]	amoxicillin ChEBI	yes	20	µg (disc)
[Ref.: #43257]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43257]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43257]	cefoxitin ChEBI	yes	30	µg (disc)
[Ref.: #43257]	cephalothin ChEBI	yes	30	µg (disc)
[Ref.: #43257]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43257]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43257]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43257]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43257]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #43257]	penicillin ChEBI	yes	10	Unit
[Ref.: #43257]	polymyxin b ChEBI	yes	300	Unit
[Ref.: #43257]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43257]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43257]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #43257]	tobramycin ChEBI				yes	10	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic resistance	Concentration
[Ref.: #43257]		26	sulfamethoxazole ChEBI	yes	23.75	µg (disc)
[Ref.: #43257]		26	trimethoprim ChEBI	yes	1.25	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #43257]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #43257]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #43257]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #43257]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #43257]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #43257]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #43257]	beta-glucosidase	-	3.2.1.21
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #43257]	catalase	+	1.11.1.6
[Ref.: #43257]	cystine arylamidase	+	3.4.11.3
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #43257]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43257]	esterase (C 4)	+
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #43257]	esterase Lipase (C 8)	+
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #43257]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #43257]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #43257]	trypsin	+/-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #43257]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #43257]	valine arylamidase	+
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43257]

Fatty acid	Percentage
C18:1ω6c / C18:1ω7c	65.1
C16:1ω6c / C16:1ω7c	14
C16:0	6.4
C18:0	5.9
C17:0	4.6
C10:0 3OH	2.9

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #64856]	24770	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+/-	-	-	+	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #64856]	14112	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	purine metabolism	79.79	75 of 94
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	allantoin degradation	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	alanine metabolism	62.07	18 of 29
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	vitamin B1 metabolism	61.54	8 of 13
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	oxidative phosphorylation	60.44	55 of 91
[Ref.: #66794]	flavin biosynthesis	60	9 of 15
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	lysine metabolism	59.52	25 of 42
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	tryptophan metabolism	57.89	22 of 38
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	vitamin B12 metabolism	41.18	14 of 34
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	ketogluconate metabolism	37.5	3 of 8
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	3-phenylpropionate degradation	33.33	5 of 15
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	degradation of pentoses	28.57	8 of 28
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	degradation of sugar alcohols	25	4 of 16
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	phenol degradation	25	5 of 20
[Ref.: #66794]	degradation of sugar acids	24	6 of 25
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	23.53	4 of 17
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43257]	Sample type/isolated from	sea sand sample
[Ref.: #43257]	Geographic location (country and/or sea, region)	Eurwangri beach in Incheon, Republic of Korea
[Ref.: #43257]	Country	Republic of Korea
[Ref.: #43257]	Country ISO 3 Code	KOR
[Ref.: #43257]	Continent	Asia
[Ref.: #43257]	Geographic location	37.0000°/126.0000°

[Ref.: #64856]	Sample type/isolated from	Sea sand
[Ref.: #64856]	Geographic location (country and/or sea, region)	Eurwangri beach, Incheon (37° 26' 55.8'' N, 126° 22' 15.7'' E)
[Ref.: #64856]	Country	Republic of Korea
[Ref.: #64856]	Country ISO 3 Code	KOR
[Ref.: #64856]	Continent	Asia
[Ref.: #64856]	Geographic location	37.4488°/126.3710°

[Ref.: #67771]	Sample type/isolated from	From sea soil of Eurwangri beach
[Ref.: #67771]	Geographic location (country and/or sea, region)	Incheon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU671051 (>99% sequence identity) for Thioclava arenosa subclade from Microbeatlas

Aquatic Samples	85
Soil Samples	12
Animal Samples	17
Plant Samples	7
Total Samples	121

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64856]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64856]	Thioclava arenosa strain CAU 1312 16S ribosomal RNA gene, partial sequence	KU671051	1442	ENA	1795308 tax ID

[Ref.: #43257]

GC-content

64.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #64856]

Culture collection no.

KCTC 52190, NBRC 111989, DSM 108277, CAU 1312

[Ref.: #96754]

SI-ID 405933

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Erratum to: Hahyoungchilella caricis gen. nov., sp. nov., isolated from a rhizosphere mudflat of a halophyte (Carex scabrifolia), transfer of Thioclava arenosa Thongphrom et al. 2017 to Pseudothioclava as Pseudothioclava arenosa gen. nov., comb. nov. and proposal of Thioclava electrotropha Chang et al. 2018 as a later heterosynonym of Thioclava sediminum.	Kim YJ, Lee SD	J Microbiol	10.1007/s12275-020-9725-z	2020	*
Phylogeny	Thioclava arenosa sp. nov., isolated from sea sand.	Thongphrom C, Kim JH, Bora N, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001853	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43257

Chutimon Thongphrom, Jong-Hwa Kim, Nagamani Bora and Wonyong Kim: Thioclava arenosa sp. nov., isolated from sea sand. IJSEM 67: 1735 - 1739 2017 ( DOI 10.1099/ijsem.0.001853 , PubMed 28598314 )

#64856

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108277

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96754

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405933.1 )

* These data were automatically processed and therefore are not curated

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