Paenibacillus polysaccharolyticus (ICMP 17623, NBRC 105191, BL9)

Name: Paenibacillus polysaccharolyticus (ICMP 17623, NBRC 105191, BL9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140554

Type strain

Strain Designation BL9

Culture col. no. ICMP 17623 NBRC 105191 BL9

NCBI tax ID(s) 582692

Special Collections Literature strains

Links

Paenibacillus polysaccharolyticus BL9 is an aerobe, Gram-positive, motile bacterium that forms circular colonies and was isolated from leaves of Bamboo collected from Tamilnadu Agricultural University campus.

Gram-positive motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265998

ICMP 17623,NBRC 105191

@ref 20215

Last LPSN update 2026-05-29 08:39:44

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus polysaccharolyticus

Full scientific name Paenibacillus polysaccharolyticus Madhaiyan et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
43305	positive	2.7-3.8 µm	0.5-0.8 µm	rod-shaped
125439						90.054

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43305	0.5-1.5 mm	pale white translucent	circular	2 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43305	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
43305	positive	optimum	28-30
43305	positive	growth	15-37

Culture pH

@ref	Ability	Type	PH	PH range
43305	positive	optimum	6.5
43305	positive	growth	4-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43305	aerobe
125439	facultative anaerobe	94.736

Spore formation

@ref	Spore formation	Confidence
125438		92.891
125439		94.967

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43305	NaCl	positive	optimum	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43305	62064 ChEBI	2,3-butanediol	-	growth
43305	17256 ChEBI	2-deoxyadenosine	-	growth
43305	64552 ChEBI	2-hydroxybutyrate	+	carbon source
43305	16763 ChEBI	2-oxobutanoate	+	carbon source
43305	28644 ChEBI	2-oxopentanoate	-	growth
43305	37054 ChEBI	3-hydroxybutyrate	+	carbon source
43305	73918 ChEBI	3-O-methyl-D-glucose	+	carbon source
43305	16724 ChEBI	4-hydroxybutyrate	+	carbon source
43305	18101 ChEBI	4-hydroxyphenylacetic acid	+	carbon source
43305	30089 ChEBI	acetate	+	carbon source
43305	16335 ChEBI	adenosine	-	growth
43305	40585 ChEBI	alpha-cyclodextrin	+	carbon source
43305	17925 ChEBI	alpha-D-glucose	+	carbon source
43305	17925 ChEBI	alpha-D-glucose	-	growth
43305	16027 ChEBI	amp	-	growth
43305	27613 ChEBI	amygdalin	+	carbon source
43305	18305 ChEBI	arbutin	+	carbon source
43305	495055 ChEBI	beta-cyclodextrin	+	carbon source
43305	85146 ChEBI	carboxymethylcellulose	+	hydrolysis
43305		casein	+	hydrolysis
43305	17057 ChEBI	cellobiose	+	carbon source
43305	15570 ChEBI	D-alanine	-	growth
43305	18333 ChEBI	D-arabitol	-	growth
43305	15824 ChEBI	D-fructose	+	carbon source
43305	78697 ChEBI	D-fructose 6-phosphate	-	growth
43305	12936 ChEBI	D-galactose	+	carbon source
43305	18024 ChEBI	D-galacturonic acid	-	growth
43305	8391 ChEBI	D-gluconate	-	growth
43305	14314 ChEBI	D-glucose 6-phosphate	-	growth
43305	15588 ChEBI	D-malate	-	growth
43305	16899 ChEBI	D-mannitol	+	carbon source
43305	16024 ChEBI	D-mannose	+	carbon source
43305	27605 ChEBI	D-psicose	+	carbon source
43305	16988 ChEBI	D-ribose	+	carbon source
43305	17924 ChEBI	D-sorbitol	+	carbon source
43305	16443 ChEBI	D-tagatose	-	growth
43305	65327 ChEBI	D-xylose	+	carbon source
43305	23652 ChEBI	dextrin	+	carbon source
43305	4853 ChEBI	esculin	+	hydrolysis
43305	5291 ChEBI	gelatin	+	hydrolysis
43305	28066 ChEBI	gentiobiose	-	growth
43305	17754 ChEBI	glycerol	+	carbon source
43305	14336 ChEBI	glycerol 1-phosphate	-	growth
43305	28087 ChEBI	glycogen	-	growth
43305	73784 ChEBI	glycyl-l-glutamate	-	growth
43305	17596 ChEBI	inosine	-	growth
43305	15443 ChEBI	inulin	-	growth
43305	21217 ChEBI	L-alaninamide	-	growth
43305	16977 ChEBI	L-alanine	-	growth
43305	73786 ChEBI	L-alanylglycine	-	growth
43305	30849 ChEBI	L-arabinose	+	carbon source
43305	17196 ChEBI	L-asparagine	-	growth
43305	18287 ChEBI	L-fucose	-	growth
43305	29985 ChEBI	L-glutamate	-	growth
43305	15589 ChEBI	L-malate	-	growth
43305	18183 ChEBI	L-pyroglutamic acid	-	growth
43305	62345 ChEBI	L-rhamnose	+	carbon source
43305	17115 ChEBI	L-serine	-	growth
43305	75144 ChEBI	lactamide	-	growth
43305	24996 ChEBI	lactate	-	growth
43305	17716 ChEBI	lactose	-	growth
43305	6359 ChEBI	lactulose	+	carbon source
43305	17306 ChEBI	maltose	+	carbon source
43305	61993 ChEBI	maltotriose	+	carbon source
43305	28808 ChEBI	mannan	-	growth
43305	6731 ChEBI	melezitose	+	carbon source
43305	28053 ChEBI	melibiose	+	carbon source
43305	74611 ChEBI	methyl (R)-lactate	-	growth
43305	55507 ChEBI	methyl alpha-D-galactoside	-	growth
43305	320061 ChEBI	methyl alpha-D-glucopyranoside	+	carbon source
43305	43943 ChEBI	methyl alpha-D-mannoside	-	growth
43305	17540 ChEBI	methyl beta-D-galactoside	+	carbon source
43305	320055 ChEBI	methyl beta-D-glucopyranoside	+	carbon source
43305	51850 ChEBI	methyl pyruvate	+	carbon source
43305	75146 ChEBI	monomethyl succinate	+	carbon source
43305	17268 ChEBI	myo-inositol	-	growth
43305	63154 ChEBI	N-acetyl-beta-D-mannosamine	+	carbon source
43305	44337 ChEBI	N-acetyl-L-glutamate	+	carbon source
43305	28037 ChEBI	N-acetylgalactosamine	-	growth
43305	17632 ChEBI	nitrate	+	reduction
43305	18394 ChEBI	palatinose	+	carbon source
43305	17272 ChEBI	propionate	-	growth
43305	17148 ChEBI	putrescine	+	carbon source
43305	15361 ChEBI	pyruvate	+	carbon source
43305	16634 ChEBI	raffinose	+	carbon source
43305	17814 ChEBI	salicin	+	carbon source
43305		sedoheptulosan	+	carbon source
43305	17164 ChEBI	stachyose	-	growth
43305	143136 ChEBI	succinamate	-	growth
43305	30031 ChEBI	succinate	+	carbon source
43305	17992 ChEBI	sucrose	+	carbon source
43305	17748 ChEBI	thymidine	-	growth
43305	63528 ChEBI	thymidine 5'-monophosphate	-	growth
43305	27082 ChEBI	trehalose	+	carbon source
43305	35020 ChEBI	tributyrin	+	hydrolysis
43305	32528 ChEBI	turanose	-	growth
43305	53423 ChEBI	tween 40	+	carbon source
43305	53426 ChEBI	tween 80	+	carbon source
43305	16704 ChEBI	uridine	-	growth
43305	16695 ChEBI	uridine 5'-monophosphate	-	growth
43305	37166 ChEBI	xylan	+	hydrolysis
43305	17151 ChEBI	xylitol	-	growth

Enzymes

@ref	Value	Activity	Ec
43305	6-phospho-beta-galactosidase	-	3.2.1.85
43305	acid phosphatase	-	3.1.3.2
43305	alkaline phosphatase	-	3.1.3.1
43305	alpha-chymotrypsin	+	3.4.21.1
43305	alpha-fucosidase	-	3.2.1.51
43305	alpha-galactosidase	-	3.2.1.22
43305	alpha-glucosidase	-	3.2.1.20
43305	alpha-mannosidase	+	3.2.1.24
43305	beta-glucosidase	-	3.2.1.21
43305	beta-glucuronidase	+	3.2.1.31
43305	catalase	+	1.11.1.6
43305	cystine arylamidase	-	3.4.11.3
43305	cytochrome oxidase	+	1.9.3.1
43305	esterase (C 4)	-
43305	esterase Lipase (C 8)	-
43305	leucine arylamidase	-	3.4.11.1
43305	lipase (C 14)	-
43305	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43305	naphthol-AS-BI-phosphohydrolase	+
43305	trypsin	+	3.4.21.4
43305	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

43305

Fatty acid	Percentage
C15:0 anteiso	53.2
C16:0 iso	16.4
C16:0	10.1
C14:0 iso	7.9
C17:0 anteiso	4.4
C15:0 iso	3.7
C14:0	2.7
C16:1ω11c	0.9
C17:0 iso	0.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43305	leaves of Bamboo (Phyllostachys aureosulcata) collected from Tamilnadu Agricultural University campus	Coimbatore, India	India	IND	Asia	11	77 11/77

Taxonmaps

69479

Global distribution of 16S sequence EU912452 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	18
Soil Samples	93
Animal Samples	40
Plant Samples	728
Total Samples	879

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2654588110 annotated assembly for Paenibacillus polysaccharolyticus BL9	scaffold	GCA_900102085	582692.3	2654588110	582692	71.76

16S sequences

@ref	Description	Accession	Database
43305	Paenibacillus polysaccharolyticus strain BL9 16S ribosomal RNA gene, partial sequence	EU912452

GC content

@ref	GC-content (mol%)	Method
43305	45.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2654588110 annotated assembly for Paenibacillus polysaccharolyticus BL9
NCBI: GCA_900102085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	variable	70.85	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.74	no
125439	motility	BacteriaNetⓘ	yes	90.05	no
125439	spore_formation	BacteriaNetⓘ	yes	94.97	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus polysaccharolyticus BL9
NCBI: GCA_900102085.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	68.98	yes
125438	anaerobic	anaerobicⓘ	no	91.43	no
125438	aerobic	aerobicⓘ	yes	50.27	yes
125438	spore-forming	spore-formingⓘ	yes	92.89	no
125438	thermophilic	thermophileⓘ	no	95.19	no
125438	flagellated	motile2+ⓘ	yes	86.59	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus polysaccharolyticus sp. nov., a xylanolytic and cellulolytic bacteria isolated from leaves of Bamboo Phyllostachys aureosulcata.	Madhaiyan M, Poonguzhali S, Saravanan VS, Duraipandiyan V, Al-Dhabi NA, Kwon SW, Whitman WB	Int J Syst Evol Microbiol	10.1099/ijsem.0.001901	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43305	Munusamy Madhaiyan, Selvaraj Poonguzhali, Venkatakrishnan Sivaraj Saravanan, Veeramuthu Duraipandiyan, Naif Abdullah Al-Dhabi, Soon-Wo Kwon, William B. Whitman: Paenibacillus polysaccharolyticus sp. nov., a xylanolytic and cellulolytic bacteria isolated from leaves of Bamboo Phyllostachys aureosulcata. IJSEM 67: 2127 - 2133 2017 ( DOI 10.1099/ijsem.0.001901 , PubMed 28671536 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus polysaccharolyticus (ICMP 17623, NBRC 105191, BL9)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900102085

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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