Name: Thalassotalea crassostreae LPB0090
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140539

Type strain:

Species: Thalassotalea crassostreae

Strain Designation: LPB0090

Culture col. no.: KACC 18695, JCM 31189

Strain history: H. Yi; Korea Univ., South Korea; LPB0090.

NCBI tax ID(s): 1763536 (species)

Section

Thalassotalea crassostreae LPB0090 is an aerobe, halophilic, chemoorganotroph bacterium that forms circular colonies and was isolated from Pacific oyster procured from Yeongheung Island, Korea.

colony-forming
Gram-negative
rod-shaped
aerobe
chemoorganotroph
halophilic
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Thalassotalea*
	Species	**Thalassotalea crassostreae**
	Full Scientific Name (LPSN)	Thalassotalea crassostreae Choi et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43326]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.967

[Ref.: #43326]	Cell length	2.2-2.6 µm

[Ref.: #43326]	Cell width	0.3-0.6 µm

[Ref.: #43326]	Cell shape	rod-shaped

[Ref.: #43326]	Motility	no

[Ref.: #43326]	Colony size	1 mm
[Ref.: #43326]	Colony color	white-yellowish
[Ref.: #43326]	Colony shape	circular
[Ref.: #43326]	Incubation period	2 days
[Ref.: #43326]	Cultivation medium used	Marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43326]

Culture medium

Marine agar (MA)

[Ref.: #43326]

Culture medium growth

		Temperature
[Ref.: #43326]	optimum	25 °C
[Ref.: #43326]	growth	15-30 °C
[Ref.: #67770]	growth	26 °C

[Ref.: #43326]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43326]			optimum	7
[Ref.: #43326]			growth	5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43326]

Oxygen tolerance

aerobe

[Ref.: #43326]

Nutrition type

chemoorganotroph

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.939

[Ref.: #43326]

Halophily / tolerance level

halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43326]		NaCl		growth	0-5	%
[Ref.: #43326]		NaCl		optimum	2-3	%

[Ref.: #43326]

Observation

ubiquinone Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43326]	adenine ChEBI	-	degradation
[Ref.: #43326]	agar ChEBI	-	degradation
[Ref.: #43326]	alginate ChEBI	-	degradation
[Ref.: #43326]	carboxymethylcellulose ChEBI	-	degradation
[Ref.: #43326]	casein	-	degradation
[Ref.: #43326]	chitin ChEBI	-	degradation
[Ref.: #43326]	dna ChEBI	+	degradation
[Ref.: #43326]	esculin ChEBI	+	degradation
[Ref.: #43326]	gelatin ChEBI	-	degradation
[Ref.: #43326]	hypoxanthine ChEBI	-	degradation
[Ref.: #43326]	L-tyrosine ChEBI	+	degradation
[Ref.: #43326]	nitrate ChEBI	+	reduction
[Ref.: #43326]	pectin ChEBI	-	degradation
[Ref.: #43326]	starch ChEBI	-	degradation
[Ref.: #43326]	tween 20 ChEBI	+	degradation
[Ref.: #43326]	tween 40 ChEBI	+	degradation
[Ref.: #43326]	tween 60 ChEBI	+	degradation
[Ref.: #43326]	tween 80 ChEBI	+	degradation
[Ref.: #43326]	xanthine ChEBI	-	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43326]	acetoin ChEBI	no
[Ref.: #43326]	hydrogen sulfide ChEBI	no
[Ref.: #43326]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43326]	acid phosphatase	+	3.1.3.2
[Ref.: #43326]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43326]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43326]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43326]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43326]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43326]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43326]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43326]	beta-galactosidase	+	3.2.1.23
[Ref.: #43326]	beta-glucosidase	+	3.2.1.21
[Ref.: #43326]	beta-glucuronidase	+	3.2.1.31
[Ref.: #43326]	catalase	+	1.11.1.6
[Ref.: #43326]	cystine arylamidase	+	3.4.11.3
[Ref.: #43326]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43326]	esterase Lipase (C 8)	+
[Ref.: #43326]	leucine arylamidase	+	3.4.11.1
[Ref.: #43326]	lipase (C 14)	+
[Ref.: #43326]	lysine decarboxylase	+	4.1.1.18
[Ref.: #43326]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43326]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43326]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #43326]	trypsin	+	3.4.21.4
[Ref.: #43326]	urease	+	3.5.1.5
[Ref.: #43326]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43326]

Fatty acid	Percentage
C16:0	22.7
C16:0ω6c / C16:1ω7c	17.3
C17:1ω8c	15.4
C17:0	5.5
C18:1ω6c / C18:1ω7c	4.6
C14:0	4.5
C16:0 iso	0.7
C12:0 iso 3OH	0.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43326]	Sample type/isolated from	Pacific oyster (Crassostrea gigas) procured from Yeongheung Island, Korea
[Ref.: #43326]	Geographic location (country and/or sea, region)	Yeongheung Island
[Ref.: #43326]	Country	Korea
[Ref.: #43326]	Country ISO 3 Code	KOR
[Ref.: #43326]	Continent	Asia
[Ref.: #43326]	Geographic location	37.0000°/126.0000°
[Ref.: #43326]	Enrichment culture	Marine agar 2216

[Ref.: #67770]	Sample type/isolated from	Pacific oyster, Crassostrea gigas
[Ref.: #67770]	Host species	Crassostrea gigas
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yeongheung Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU160140 (>99% sequence identity) for Thalassotalea crassostreae subclade from Microbeatlas

Aquatic Samples	2386
Soil Samples	73
Animal Samples	361
Plant Samples	10
Total Samples	2830

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43326]	16S rRNA gene sequence	KU160140		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thalassotalea crassostreae LPB0090	GCA_001831495	complete	GenBank	1763536 tax ID	*
[Ref.: #66792]	Thalassotalea crassostreae LPB0090	GCA_001652445	scaffold	GenBank	1763536 tax ID	*
[Ref.: #66792]	Thalassotalea crassostreae LPB0090	2718218024	complete	JGI IMG/M	1763536 tax ID	*
[Ref.: #66792]	Thalassotalea crassostreae LPB0090	2744054623	draft	JGI IMG/M	1763536 tax ID	*

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GC-content

38.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thalassotalea crassostreae LPB0090 NCBI: GCA_001831495.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thalassotalea crassostreae LPB0090 NCBI: GCA_001831495.1
[Ref.: #69480]	flagellated	no	94.425	yes
[Ref.: #69480]	gram-positive	no	98.766	no
[Ref.: #69480]	anaerobic	no	98.677	yes
[Ref.: #69480]	aerobic	yes	85.171	yes
[Ref.: #69480]	halophile	yes	74.984	yes
[Ref.: #69480]	spore-forming	no	97.645	no
[Ref.: #69480]	thermophile	no	97.409	yes
[Ref.: #69480]	glucose-util	yes	87.072	no
[Ref.: #69480]	motile	no	86.907	no
[Ref.: #69480]	glucose-ferment	no	68.87	no

Availability in culture collections External links

[Ref.: #43326]

Culture collection no.

KACC 18695, JCM 31189

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thalassotalea crassostreae sp. nov., isolated from Pacific oyster.	Choi S, Kim E, Shin SK, Yi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001923	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43326

Sungmi Choi, Eunji Kim, Su-Kyoung Shin, Hana Yi: Thalassotalea crassostreae sp. nov., isolated from Pacific oyster. IJSEM 67: 2195 - 2198 2017 ( DOI 10.1099/ijsem.0.001923 , PubMed 28691654 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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