Name: Streptomyces rhizosphaerihabitans JR-35
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140493

Type strain:

Species: Streptomyces rhizosphaerihabitans

Strain Designation: JR-35, IMER00654

Culture col. no.: KACC 17181, NBRC 109807, DSM 111589

NCBI tax ID(s): 1266770 (species)

SI-ID 397621

DSM 111589

Special Collections

Section

Streptomyces rhizosphaerihabitans JR-35 is an aerobe, spore-forming, Gram-positive bacterium that builds a substrate mycelium and was isolated from bamboo rhizosphere soil.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces rhizosphaerihabitans**
	Full Scientific Name (LPSN)	Streptomyces rhizosphaerihabitans Lee and Whang 2016

Information on morphological and physiological properties Morphology

[Ref.: #43108]	Gram stain	positive

[Ref.: #43108]	Motility	no

[Ref.: #43108]	Pigment production	yes
[Ref.: #43108]	Pigment name	Melanin pigments (on ISP 6 medium)

[Ref.: #43108]	Multicellular complex forming ability	yes
[Ref.: #43108]	Multicellular complex name	substrate mycelium
[Ref.: #43108]	Multicellular complex further description	extensively branched

[Ref.: #43108]	Multicellular complex forming ability	yes
[Ref.: #43108]	Multicellular complex name	aerial hyphae
[Ref.: #43108]	Multicellular complex further description	differentiate into straight to flexuous (Rectiflexibiles) chains of hairy spores

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ISP 7

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Culture medium growth

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #67668]

Culture medium composition

expand / minimize

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #67668]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43108]	optimum	28 °C
[Ref.: #43108]	growth	4-37 °C
[Ref.: #67668]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #43108]			optimum	6.0-8.0
[Ref.: #43108]			growth	4.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43108]		NaCl		growth	0-5	%(w/v)
[Ref.: #43108]		NaCl	no	growth	7	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43108]	casein	+	hydrolysis
[Ref.: #43108]	cellulose ChEBI	+	hydrolysis
[Ref.: #43108]	D-fructose ChEBI	+	carbon source
[Ref.: #43108]	D-glucose ChEBI	+	carbon source
[Ref.: #43108]	D-mannitol ChEBI	+	carbon source
[Ref.: #43108]	D-xylose ChEBI	+	carbon source
[Ref.: #43108]	gelatin ChEBI	-	hydrolysis
[Ref.: #43108]	L-arabinose ChEBI	+	carbon source
[Ref.: #43108]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43108]	nitrate ChEBI	+	reduction
[Ref.: #43108]	raffinose ChEBI	+	carbon source
[Ref.: #43108]	starch ChEBI	-	hydrolysis
[Ref.: #43108]	sucrose ChEBI	+	carbon source
[Ref.: #43108]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43108]

Fatty acid	Percentage
C15:0 anteiso	29.15
C16:0 iso	19.66
C14:0 iso	13.36
C15:0 iso	12.02

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43108]	Sample type/isolated from	bamboo (Sasa borealis) rhizosphere soil
[Ref.: #43108]	Geographic location (country and/or sea, region)	Damyang, Jeonnam
[Ref.: #43108]	Country	Republic of Korea
[Ref.: #43108]	Country ISO 3 Code	KOR
[Ref.: #43108]	Continent	Asia
[Ref.: #43108]	Enrichment culture	starch casein agar
[Ref.: #43108]	Enrichment culture duration	7 days
[Ref.: #43108]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67668]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43108]	Streptomyces rhizosphaerihabitans strain JR-35 16S ribosomal RNA gene, partial sequence	HQ267983	1462	GenBank ENA	1266770 tax ID

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GC-content

69.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KACC 17181, NBRC 109807, DSM 111589

[Ref.: #96731]

SI-ID 397621

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic Characterization, and Secondary Metabolite Analysis of Streptomyces triticiradicis sp. nov.: A Novel Actinomycete with Antifungal Activity.	Yu Z, Han C, Yu B, Zhao J, Yan Y, Huang S, Liu C, Xiang W	Microorganisms	10.3390/microorganisms8010077	2020	*
Phylogeny	Streptomyces lutosisoli sp. nov., a novel actinomycete isolated from muddy soil.	Shen Y, Sun T, Jiang S, Mu S, Li D, Guo X, Zhang J, Zhao J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-018-1129-2	2018	*
Phylogeny	Streptomyces rhizosphaerihabitans sp. nov. and Streptomyces adustus sp. nov., isolated from bamboo forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001236	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43108

Hyo-Jin Lee, Kyung-Sook Whang: Streptomyces rhizosphaerihabitans sp. nov. and Streptomyces adustus sp. nov., isolated from bamboo forest soil. IJSEM 66: 3573 - 3578 2016 ( DOI 10.1099/ijsem.0.001236 , PubMed 27298302 )

#67668

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111589

#96731

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397621.1 )

* These data were automatically processed and therefore are not curated

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