Name: Streptococcus ruminantium GUT-187
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140411

Type strain:

Species: Streptococcus ruminantium

Strain Designation: GUT-187

Culture col. no.: DSM 104980, JCM 31869

Strain history: T. Sekizaki; Univ. of Tokyo, Japan; GUT-187.

NCBI tax ID(s): 1917441 (species)

SI-ID 405087

DSM 104980

Special Collections

Section

Streptococcus ruminantium GUT-187 is an aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from heart of a cattle with endocarditis.

coccus-shaped
colony-forming
Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus ruminantium**
	Full Scientific Name (LPSN)	Streptococcus ruminantium Tohya et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43494]	Gram stain	positive

[Ref.: #43494]	Cell width	0.5-1 µm

[Ref.: #43494]	Cell shape	coccus-shaped

[Ref.: #43494]	Motility	no

[Ref.: #43494]	Type of hemolysis	alpha
[Ref.: #43494]	Hemolysis ability	1
[Ref.: #43494]	Colony size	0.5-1 mm
[Ref.: #43494]	Colony color	non-pigmented
[Ref.: #43494]	Colony shape	circular
[Ref.: #43494]	Cultivation medium used	Blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43494]

Culture medium

Blood agar

[Ref.: #43494]

Culture medium growth

[Ref.: #43018]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #43018]

Culture medium growth

[Ref.: #43018]

Culture medium link

Medium recipe at MediaDive

[Ref.: #43018]

Culture medium composition

expand / minimize

[Ref.: #43018]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #43018]

Culture medium growth

[Ref.: #43018]

Culture medium link

Medium recipe at MediaDive

[Ref.: #43018]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #43018]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43494]

Oxygen tolerance

aerobe

[Ref.: #43494]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43494]		NaCl	no	growth	6.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43494]	arginine ChEBI	-	hydrolysis
[Ref.: #68381]	arginine ChEBI	+	hydrolysis	* from API rID32STR
[Ref.: #43494]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43494]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43494]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43494]	D-trehalose ChEBI	+	builds acid from
[Ref.: #43494]	glycogen ChEBI	+	builds acid from
[Ref.: #68381]	glycogen ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43494]	hippurate ChEBI	-	hydrolysis
[Ref.: #68381]	hippurate ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #43494]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43494]	lactose ChEBI	+	builds acid from
[Ref.: #68381]	lactose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43494]	maltose ChEBI	+	builds acid from
[Ref.: #68381]	maltose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43494]	melezitose ChEBI	-	builds acid from
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43494]	melibiose ChEBI	-	builds acid from
[Ref.: #43494]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43494]	pullulan ChEBI	+	builds acid from
[Ref.: #68381]	pullulan ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	raffinose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43494]	ribose ChEBI	-	builds acid from
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #43494]	sucrose ChEBI	+	builds acid from
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #43494]	tagatose ChEBI	-	builds acid from
[Ref.: #68381]	trehalose ChEBI	+	builds acid from	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43494]		acetoin ChEBI	no
[Ref.: #68381]		acetoin ChEBI	no	* from API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43494]		acetoin ChEBI	-
[Ref.: #68381]		acetoin ChEBI	-	* from API rID32STR

	Enzyme	Enzyme activity	EC number
[Ref.: #43494]	acid phosphatase	-	3.1.3.2
[Ref.: #43494]	alanine arylamidase	+	3.4.11.2
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #68381]	alkaline phosphatase	-	3.1.3.1	* from API rID32STR
[Ref.: #43494]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43494]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43494]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68381]	alpha-galactosidase	+	3.2.1.22	* from API rID32STR
[Ref.: #43494]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43494]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68381]	arginine dihydrolase	+	3.5.3.6	* from API rID32STR
[Ref.: #43494]	beta-galactosidase	-	3.2.1.23
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR
[Ref.: #43494]	beta-glucosidase	+	3.2.1.21
[Ref.: #68381]	beta-glucosidase	+	3.2.1.21	* from API rID32STR
[Ref.: #68381]	beta-glucuronidase	+	3.2.1.31	* from API rID32STR
[Ref.: #43494]	beta-mannosidase	-	3.2.1.25
[Ref.: #68381]	beta-mannosidase	+	3.2.1.25	* from API rID32STR
[Ref.: #43494]	catalase	-	1.11.1.6
[Ref.: #43494]	cystine arylamidase	-	3.4.11.3
[Ref.: #43494]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43494]	esterase (C 4)	+
[Ref.: #43494]	esterase Lipase (C 8)	+
[Ref.: #43494]	glycyl tryptophan arylamidase	+
[Ref.: #68381]	glycyl tryptophan arylamidase	+		* from API rID32STR
[Ref.: #43494]	leucine arylamidase	+	3.4.11.1
[Ref.: #43494]	lipase (C 14)	-
[Ref.: #43494]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR
[Ref.: #43494]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43494]	phenylalanine arylamidase	+
[Ref.: #43494]	proline-arylamidase	+	3.4.11.5
[Ref.: #43494]	pyroglutamic acid arylamidase	-
[Ref.: #68381]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API rID32STR
[Ref.: #43494]	trypsin	-	3.4.21.4
[Ref.: #43494]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #43018]	10830	+	+	+	+	+	-	-	-	-	+	+	+	+	-	-	+	-	+	-	+	-	+	-	+	+	+	+/-	-	+	-	+	+
[Ref.: #43018]	10738	+	+	+	+	+	-	-	-	-	+	+	+	+	-	-	+	-	+	-	+	-	+	-	+	+	+	+/-	-	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43018]	Sample type/isolated from	heart of a cattle with endocarditis
[Ref.: #43018]	Geographic location (country and/or sea, region)	Miyagi Prefecture
[Ref.: #43018]	Country	Japan
[Ref.: #43018]	Country ISO 3 Code	JPN
[Ref.: #43018]	Continent	Asia
[Ref.: #43018]	Geographic location	38.2682°/140.8690°

[Ref.: #43494]	Sample type/isolated from	heart of a cattle with endocarditis

[Ref.: #67770]	Sample type/isolated from	Heart of a cattle with endocarditis
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Heart
#Infection	#Inflammation	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC195038 (>99% sequence identity) for Streptococcus ruminantium subclade from Microbeatlas

Aquatic Samples	7
Soil Samples	6
Animal Samples	72
Plant Samples
Total Samples	85

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43018]	Streptococcus ruminantium GUT-187 gene for 16S ribosomal RNA, partial sequence	LC195038	1546	GenBank ENA	1917441 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptococcus ruminantium GUT-187	GCA_003609975	complete	GenBank ENA	1917441 tax ID
[Ref.: #66792]	Streptococcus ruminantium GUT-187	2880287480	complete	JGI IMG/M	1917441 tax ID	*

[Ref.: #43018]

GC-content

41.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43018]

Culture collection no.

DSM 104980, JCM 31869

[Ref.: #96687]

SI-ID 405087

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Defining the taxonomic status of Streptococcus suis serotype 33: the proposal for Streptococcus ruminantium sp. nov.	Tohya M, Arai S, Tomida J, Watanabe T, Kawamura Y, Katsumi M, Ushimizu M, Ishida-Kuroki K, Yoshizumi M, Uzawa Y, Iguchi S, Yoshida A, Kikuchi K, Sekizaki T	Int J Syst Evol Microbiol	10.1099/ijsem.0.002204	2017	*
Genetics	Complete Genome Sequence of Streptococcus ruminantium sp. nov. GUT-187T (=DSM 104980T =JCM 31869T), the Type Strain of S. ruminantium, and Comparison with Genome Sequences of Streptococcus suis Strains.	Tohya M, Sekizaki T, Miyoshi-Akiyama T	Genome Biol Evol	10.1093/gbe/evy078	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43018

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104980

#43494

Mari Tohya, Sakura Arai, Junko Tomida, Takayasu Watanabe, Yoshiaki Kawamura, Masanori Katsumi, Mariko Ushimizu, Kasumi Ishida-Kuroki, Mina Yoshizumi, Yutaka Uzawa, Shigekazu Iguchi, Atsushi Yoshida, Ken Kikuchi, Tsutomu Sekizaki: Defining the taxonomic status of Streptococcus suis serotype 33: the proposal for Streptococcus ruminantium sp. nov.. IJSEM 67: 3660 - 3665 2017 ( DOI 10.1099/ijsem.0.002204 , PubMed 28840807 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68381

Automatically annotated from API rID32STR .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96687

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405087.1 )

* These data were automatically processed and therefore are not curated

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