Name: Mycobacterium persicum AFPC-000227
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140288

Type strain:

Species: Mycobacterium persicum

Strain Designation: AFPC-000227

Culture col. no.: DSM 104278, CIP 111197, AFPC 000207, AFPC 000227

Strain history: CIP <- 2016, E. Tortoli, San Raffaele Scientific Inst., Milano, Italy: strain AFPC000227

NCBI tax ID(s): 1487726 (species)

SI-ID 407602

DSM 104278, CIP 111197

Special Collections

Section

Mycobacterium persicum AFPC-000227 is a bacterium that was isolated from sputum from a patient with fever, productive cough and shortness of breath.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium persicum**
	Full Scientific Name (LPSN)	Mycobacterium persicum Shahraki et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #121689]	Gram stain	positive

[Ref.: #121689]	Cell shape	rod-shaped

[Ref.: #121689]	Motility	no

Multimedia content

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Caption:

Medium 645 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

CIP Medium 55

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

MacConkey agar without crystal violet

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #42895]		growth	37 °C
[Ref.: #43241]	no	growth	42 °C
[Ref.: #43241]		growth	25 °C
[Ref.: #43241]		growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43241]	Observation	niacin accumulation
[Ref.: #43241]	Observation	Yellow pigmentation developed only after light exposure

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43241]	nitrate ChEBI	+	reduction
[Ref.: #43241]	tellurite ChEBI	-	reduction
[Ref.: #43241]	tween 80 ChEBI	+	hydrolysis

	Metabolite	Antibiotic sensitivity
[Ref.: #43241]	amikacin ChEBI	yes
[Ref.: #43241]	clarithromycin ChEBI	yes
[Ref.: #43241]	linezolid ChEBI	yes
[Ref.: #43241]	moxifloxacin ChEBI	yes
[Ref.: #43241]	rifampicin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43241]	beta-glucosidase	-	3.2.1.21
[Ref.: #43241]	catalase	+	1.11.1.6
[Ref.: #43241]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42895]	Sample type/isolated from	sputum from a patient with fever, productive cough and shortness of breath
[Ref.: #42895]	Geographic location (country and/or sea, region)	Teheran General Hospital
[Ref.: #42895]	Country	Iran
[Ref.: #42895]	Country ISO 3 Code	IRN
[Ref.: #42895]	Continent	Asia

[Ref.: #43241]	Sample type/isolated from	pulmonary specimens of Iranian patient (female) with pulmonary disease
[Ref.: #43241]	Geographic location (country and/or sea, region)	Tehran, Iran
[Ref.: #43241]	Country	Iran
[Ref.: #43241]	Country ISO 3 Code	IRN
[Ref.: #43241]	Continent	Asia
[Ref.: #43241]	Isolation date	2009

[Ref.: #121689]	Sample type/isolated from	Human, Sputum sample
[Ref.: #121689]	Geographic location (country and/or sea, region)	Tehran
[Ref.: #121689]	Country	Iran
[Ref.: #121689]	Country ISO 3 Code	IRN
[Ref.: #121689]	Continent	Asia
[Ref.: #121689]	Isolation date	2009-01-02
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Sputum
#Infection	#Patient	-

What are isolation sources categories?

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Global distribution of 16S sequence KX987140 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	382
Soil Samples	881
Animal Samples	203
Plant Samples	54
Total Samples	1520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42895]	Mycobacterium persicum strain AFPC-000227 16S ribosomal RNA gene, partial sequence	KX987140	1527	GenBank ENA	1487726 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium persicum AFPC-000227	GCA_002086675	contig	GenBank ENA	1487726 tax ID	*
[Ref.: #66792]	Mycobacterium sp. AFPC-000227 strain AFPC-000227	1487726.3	wgs	PATRIC	1487726 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium sp. AFPC-000227 strain AFPC-000227 PATRIC: 1487726.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.867	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.184	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	61.648	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.92	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.375	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

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Culture collection no.

DSM 104278, CIP 111197, AFPC 000207, AFPC 000227

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SI-ID 407602

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium persicum sp. nov., a novel species closely related to Mycobacterium kansasii and Mycobacterium gastri.	Shahraki AH, Trovato A, Mirsaeidi M, Borroni E, Heidarieh P, Hashemzadeh M, Shahbazi N, Cirillo DM, Tortoli E	Int J Syst Evol Microbiol	10.1099/ijsem.0.001862	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42895

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104278

#43241

Abdolrazagh Hashemi Shahraki, Alberto Trovato, Mehdi Mirsaeidi, Emanuele Borroni, Parvin Heidarieh, Mohamad Hashemzadeh, Narges Shahbazi, Daniela M. Cirillo and Enrico Tortoli: Mycobacterium persicum sp. nov., a novel species closely related to Mycobacterium kansasii and Mycobacterium gastri. IJSEM 67: 1766 - 1770 2017 ( DOI 10.1099/ijsem.0.001862 , PubMed 28629501 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96594

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407602.1 )

#121689 Collection of Institut Pasteur ; Curators of the CIP; CIP 111197
* These data were automatically processed and therefore are not curated

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Mycobacterium sp. AFPC-000227 strain AFPC-000227

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