Strain identifier

BacDive ID: 140288

Type strain: Yes

Species: Mycobacterium persicum

Strain Designation: AFPC-000227

Culture col. no.: DSM 104278, CIP 111197, AFPC 000207

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General

@ref: 42895

BacDive-ID: 140288

DSM-Number: 104278

keywords: Bacteria, 16S sequence, genome sequence, thermophilic

description: Mycobacterium persicum AFPC-000227 is a thermophilic bacterium that was isolated from sputum from a patient with fever, productive cough and shortness of breath.

strain history: <- E. Tortoli, San Raffaele Scientific Institute, Milan, Italy; AFPC-000227 <- A.H. Shahraki; Pasture Institute of Iran, Dep. of Epidemiology, Teheran; AFPC-000227

doi: 10.13145/bacdive140288.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium persicum
  • full scientific name: Mycobacterium persicum Shahraki et al. 2017

@ref: 42895

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium persicum

full scientific name: Mycobacterium persicum Shahraki et al. 2017

strain designation: AFPC-000227

type strain: yes

Morphology

multimedia

  • @ref: 42895
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_104278.jpg
  • caption: Medium 645 37°C
  • license or copyright: (C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
  • intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Culture and growth conditions

culture medium

@refnamegrowthlink
43241MacConkey agar without crystal violetno
42895MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium645.pdf

culture temp

@refgrowthtypetemperaturerange
43241nogrowth42thermophilic
43241positivegrowth25mesophilic
43241positivegrowth37mesophilic
42895positivegrowth37mesophilic

Physiology and metabolism

observation

@refobservation
43241niacin accumulation
43241Yellow pigmentation developed only after light exposure

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4324117632nitrate+reduction
4324153426tween 80+hydrolysis
4324130477tellurite-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
432412637amikacinyesyes
432413732clarithromycinyesyes
4324163607linezolidyesyes
4324163611moxifloxacinyesyes
4324128077rifampicinyesyes

enzymes

@refvalueactivityec
43241catalase+1.11.1.6
43241urease-3.5.1.5
43241beta-glucosidase-3.2.1.21

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
42895sputum from a patient with fever, productive cough and shortness of breathTeheran General HospitalIranIRNAsia
43241pulmonary specimens of Iranian patient (female) with pulmonary diseaseTehran, IranIranIRNAsia2009

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Sputum
#Infection#Patient

Sequence information

16S sequences

  • @ref: 42895
  • description: Mycobacterium persicum strain AFPC-000227 16S ribosomal RNA gene, partial sequence
  • accession: KX987140
  • length: 1527
  • database: ena
  • NCBI tax ID: 1487726

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium persicum AFPC-000227GCA_002086675contigncbi1487726
66792Mycobacterium persicum H47GCA_002705895scaffoldncbi1487726
66792Mycobacterium persicum H48GCA_002705835scaffoldncbi1487726
66792Mycobacterium persicum 1010001469GCA_001632975scaffoldncbi1487726
66792Mycobacterium persicum MK15GCA_900566005contigncbi1487726
66792Mycobacterium persicum MK4GCA_900566035contigncbi1487726
66792Mycobacterium persicum MK42GCA_900566015contigncbi1487726
66792Mycobacterium persicum CSURQ1465GCA_902825395contigncbi1487726
66792Mycobacterium persicum 12MKGCA_002086915scaffoldncbi1487726
66792Mycobacterium persicum 3MKGCA_002086925scaffoldncbi1487726
66792Mycobacterium persicum 8MKGCA_002086855scaffoldncbi1487726
66792Mycobacterium persicum 7MKGCA_002086935scaffoldncbi1487726
66792Mycobacterium persicum strain MK151487726.5wgspatric1487726
66792Mycobacterium persicum strain MK41487726.7wgspatric1487726
66792Mycobacterium persicum strain MK421487726.6wgspatric1487726
66792Mycobacterium sp. AFPC-000227 strain AFPC-0002271487726.3wgspatric1487726

External links

@ref: 42895

culture collection no.: DSM 104278, CIP 111197, AFPC 000207

Reference

@idauthorstitledoi/urlcataloguejournal
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
42895Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104278Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104278)
43241Abdolrazagh Hashemi Shahraki, Alberto Trovato, Mehdi Mirsaeidi, Emanuele Borroni, Parvin Heidarieh, Mohamad Hashemzadeh, Narges Shahbazi, Daniela M. Cirillo and Enrico TortoliMycobacterium persicum sp. nov., a novel species closely related to Mycobacterium kansasii and Mycobacterium gastri10.1099/ijsem.0.001862IJSEM 67: 1766-1770 2017
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes