Name: Naumannella huperziae DSM 101717
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140289

Type strain:

Species: Naumannella huperziae

Culture col. no.: DSM 101717, NBRC 111773, CPCC 204135

Strain history: <- X.-Q. Zhang, Chinese Acad. Sci. (CAS), Beijing; CPCC 204135 <- Hong Min Sun

NCBI tax ID(s): 1730526 (species)

SI-ID 400179

DSM 101717

Section

Naumannella huperziae DSM 101717 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from surface-sterilized medicinal plant, Huperzia serrata.

colony-forming
Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Naumannella*
	Species	**Naumannella huperziae**
	Full Scientific Name (LPSN)	Naumannella huperziae Sun et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43247]	Gram stain	positive

[Ref.: #43247]	Cell length	0.9-1.2 µm

[Ref.: #43247]	Cell width	0.4-0.6 µm

[Ref.: #43247]	Cell shape	rod-shaped

[Ref.: #43247]	Motility	no

[Ref.: #43247]	Colony color	pale yellow to grey-black
[Ref.: #43247]	Colony shape	circular
[Ref.: #43247]	Cultivation medium used	DSMZ 92 medium

[Ref.: #43247]	Pigment production	no
[Ref.: #43247]	Pigment name	diffusible pigments

Information on culture and growth conditions Culture and growth conditions

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Culture medium

DSMZ 92 medium

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Culture medium growth

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #42896]	growth	28 °C
[Ref.: #43247]	optimum	28-32 °C
[Ref.: #43247]	growth	20-37 °C

[Ref.: #42896]	Temperature range	mesophilic
[Ref.: #43247]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43247]			optimum	7.0-8.0
[Ref.: #43247]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #43247]	Type of spore	spore
[Ref.: #43247]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43247]		NaCl		growth	0-9	%(w/v)
[Ref.: #43247]		NaCl		optimum	0-3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43247]	(S)-lactate ChEBI	-	carbon source
[Ref.: #43247]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #43247]	3-O-methyl-D-glucose ChEBI	+	carbon source
[Ref.: #43247]	acetoacetate ChEBI	+	carbon source
[Ref.: #43247]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43247]	cellobiose ChEBI	+	carbon source
[Ref.: #43247]	cellulose ChEBI	-	hydrolysis
[Ref.: #43247]	D-arabitol ChEBI	+	carbon source
[Ref.: #43247]	D-aspartate ChEBI	+	carbon source
[Ref.: #43247]	D-fructose ChEBI	+	carbon source
[Ref.: #43247]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #43247]	D-fucose ChEBI	+	carbon source
[Ref.: #43247]	D-galactose ChEBI	+	carbon source
[Ref.: #43247]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #43247]	D-gluconate ChEBI	+	carbon source
[Ref.: #43247]	D-glucose ChEBI	+	carbon source
[Ref.: #43247]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #43247]	D-glucuronate ChEBI	+	carbon source
[Ref.: #43247]	D-malate ChEBI	+	carbon source
[Ref.: #43247]	D-mannose ChEBI	+	carbon source
[Ref.: #43247]	D-saccharate ChEBI	+	carbon source
[Ref.: #43247]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43247]	dextrin ChEBI	+	carbon source
[Ref.: #43247]	galactarate ChEBI	+	carbon source
[Ref.: #43247]	galactitol ChEBI	+	builds acid from
[Ref.: #43247]	gelatin ChEBI	+	hydrolysis
[Ref.: #43247]	gelatin ChEBI	+	carbon source
[Ref.: #43247]	gentiobiose ChEBI	+	carbon source
[Ref.: #43247]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43247]	glucuronamide ChEBI	+	carbon source
[Ref.: #43247]	glucuronamide ChEBI	+	builds acid from
[Ref.: #43247]	glycerol ChEBI	+	carbon source
[Ref.: #43247]	inulin ChEBI	-	builds acid from
[Ref.: #43247]	L-alanine ChEBI	+	carbon source
[Ref.: #43247]	L-arabinose ChEBI	+	carbon source
[Ref.: #43247]	L-arabinose ChEBI	+/-	builds acid from
[Ref.: #43247]	L-arginine ChEBI	+	carbon source
[Ref.: #43247]	L-aspartate ChEBI	+	carbon source
[Ref.: #43247]	L-fucose ChEBI	+	carbon source
[Ref.: #43247]	L-glutamate ChEBI	+	carbon source
[Ref.: #43247]	L-histidine ChEBI	+	carbon source
[Ref.: #43247]	L-malate ChEBI	+	carbon source
[Ref.: #43247]	L-pyroglutamic acid ChEBI	+	carbon source
[Ref.: #43247]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43247]	L-serine ChEBI	+	carbon source
[Ref.: #43247]	lactose ChEBI	+	carbon source
[Ref.: #43247]	lactose ChEBI	+	builds acid from
[Ref.: #43247]	maltose ChEBI	+	carbon source
[Ref.: #43247]	methyl (R)-lactate ChEBI	+	carbon source
[Ref.: #43247]	methyl alpha-D-glucopyranoside ChEBI	+/-	builds acid from
[Ref.: #43247]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #43247]	milk	+	hydrolysis
[Ref.: #43247]	myo-inositol ChEBI	+	carbon source
[Ref.: #43247]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43247]	pectin ChEBI	+	carbon source
[Ref.: #43247]	quinate ChEBI	+	carbon source
[Ref.: #43247]	salicin ChEBI	+/-	carbon source
[Ref.: #43247]	salicin ChEBI	+/-	builds acid from
[Ref.: #43247]	stachyose ChEBI	+	carbon source
[Ref.: #43247]	starch ChEBI	+	hydrolysis
[Ref.: #43247]	sucrose ChEBI	+	carbon source
[Ref.: #43247]	trehalose ChEBI	+	carbon source
[Ref.: #43247]	turanose ChEBI	+	carbon source
[Ref.: #43247]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43247]	tween 40 ChEBI	+	carbon source
[Ref.: #43247]	urea ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43247]		hydrogen sulfide ChEBI	no
[Ref.: #43247]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43247]	acid phosphatase	+	3.1.3.2
[Ref.: #43247]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43247]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43247]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43247]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43247]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43247]	beta-galactosidase	+	3.2.1.23
[Ref.: #43247]	beta-glucosidase	+	3.2.1.21
[Ref.: #43247]	catalase	+	1.11.1.6
[Ref.: #43247]	cystine arylamidase	+	3.4.11.3
[Ref.: #43247]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43247]	esterase (C 4)	+
[Ref.: #43247]	esterase Lipase (C 8)	+
[Ref.: #43247]	leucine arylamidase	+	3.4.11.1
[Ref.: #43247]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43247]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43247]	trypsin	+	3.4.21.4
[Ref.: #43247]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42896]	Sample type/isolated from	surface-sterilized medicinal plant, Huperzia serrata
[Ref.: #42896]	Host species	Huperzia serrata
[Ref.: #42896]	Geographic location (country and/or sea, region)	Sichuan province, Hongya County (29° 41' 24.98'' N 103° 10' 16.23'' E, 1187 m above sea level)
[Ref.: #42896]	Country	China
[Ref.: #42896]	Country ISO 3 Code	CHN
[Ref.: #42896]	Continent	Asia
[Ref.: #42896]	Geographic location	29.6903°/103.1710°

[Ref.: #43247]	Sample type/isolated from	surface-sterilized medicinal plant, Huperzia serrata (Thunb.)
[Ref.: #43247]	Geographic location (country and/or sea, region)	Hongya County of Sichuan Province, south-west China
[Ref.: #43247]	Country	China
[Ref.: #43247]	Country ISO 3 Code	CHN
[Ref.: #43247]	Continent	Asia
[Ref.: #43247]	Geographic location	29.0000°/103.0000°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR184192 (>99% sequence identity) for Naumannella from Microbeatlas

Aquatic Samples	264
Soil Samples	288
Animal Samples	744
Plant Samples	42
Total Samples	1338

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42896]	Naumannella huperziae strain CPCC 204135 16S ribosomal RNA gene, partial sequence	KR184192	1511	ENA	1730526 tax ID

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GC-content

71.8 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

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Culture collection no.

DSM 101717, NBRC 111773, CPCC 204135

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SI-ID 400179

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Naumannella huperziae sp. nov., an endophytic actinobacterium isolated from Huperzia serrata (Thunb.).	Sun Y, Chen HH, Sun HM, Ai MJ, Su J, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001882	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42896

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101717

#43247

Ye Sun, Hua-Hong Chen, Hong-Min Sun, Meng-Jie Ai, Jing Su, Li-Yan Yu and Yu-Qin Zhang: Naumannella huperziae sp. nov., an endophytic actinobacterium isolated from Huperzia serrata (Thunb.). IJSEM 67: 1867 - 1872 2017 ( DOI 10.1099/ijsem.0.001882 , PubMed 28629493 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96595

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400179.1 )

* These data were automatically processed and therefore are not curated

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