WAO is a bacterium that was isolated from Aerobic black shale slurry amended with 5mM As.
genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Alphaproteobacteria |
| Order Hyphomicrobiales |
| Family Boseaceae |
| Genus Bosea |
| Full scientific name Bosea Das et al. 1996 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 42529 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | Medium recipe at MediaDive | Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water | ||
| 42529 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 42529 | positive | growth | 28 |
| @ref | Sample type | Country | Country ISO 3 Code | Continent | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|
| 42529 | Aerobic black shale slurry amended with 5mM As(III) | USA | USA | North America | 40.2893 | 74.8144 40.2893/74.8144 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | IMG accession | |
|---|---|---|---|---|---|---|---|---|
| 66792 | Bosea sp. DSM 102914 | complete | 2735892 | 94.28 | ||||
| 66792 | Bosea sp. DSM 102914 | contig | 406341 | 73.59 | ||||
| 66792 | ASM150983v1 assembly for Bosea sp. WAO | contig | 406341 | 71.09 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 42529 | Bosea sp. WAO 16S ribosomal RNA gene, partial sequence | DQ986321.1 | 1207 | 406341 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 96.80 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 70.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 96.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 95.10 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.83 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.50 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 89.32 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.33 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 83.20 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 73.03 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Draft genome sequence of Bosea sp. WAO an arsenite and sulfide oxidizer isolated from a pyrite rock outcrop in New Jersey. | Walczak AB, Yee N, Young LY | Stand Genomic Sci | 10.1186/s40793-018-0312-4 | 2018 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #42529 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102914 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive139921.20251217.10
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