Name: Corynebacterium gottingense 99221/2016
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 139735

Type strain:

Species: Corynebacterium gottingense

Strain Designation: 99221/2016

Culture col. no.: DSM 103494, CIP 111599, JCM 31931

Strain history: CIP <- 2017, DSMZ <- O. Zimmermann, Göttingen Univ., Göttingen, Germany: strain 99221/2016

NCBI tax ID(s): 2041036 (species)

SI-ID 402618

DSM 103494, CIP 111599

Other strains from Corynebacterium gottingense

C. gottingense 99221/2016 - low, DSM 108039
C. gottingense 99221/2016 - high, DSM 108986
C. gottingense NBT06-6, NBT06-06, DSM 105365, ...

Section

Corynebacterium gottingense 99221/2016 is a mesophilic, Gram-positive, rod-shaped human pathogen that forms circular colonies and was isolated from blood of a clinical patient.

colony-forming
Gram-positive
rod-shaped
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium gottingense**
	Full Scientific Name (LPSN)	Corynebacterium gottingense Atasayar et al. 2017

	Synonym	Corynebacterium godavarianum
	Synonym	Corynebacterium hadale

Information on morphological and physiological properties Morphology

[Ref.: #65271]	Gram stain	positive
[Ref.: #119716]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #65271]	Cell shape	rod-shaped
[Ref.: #119716]	Cell shape	rod-shaped

[Ref.: #119716]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %98.264

[Ref.: #65271]	Colony color	white-cream
[Ref.: #65271]	Colony shape	circular

Multimedia content

[Ref.: #42346]

Caption:

Medium 693 37°C

[Ref.: #42346]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42346]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #42346]

Culture medium growth

[Ref.: #42346]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42346]

Culture medium composition

expand / minimize

[Ref.: #42346]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #42346]

Culture medium growth

[Ref.: #42346]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42346]

Culture medium composition

expand / minimize

[Ref.: #119716]

Culture medium

CIP Medium 72

[Ref.: #119716]

Culture medium growth

[Ref.: #119716]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #42346]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #42346]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65271]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.987

[Ref.: #65271]	Observation	non-lipophilic
[Ref.: #65271]	Observation	Grows at 37 C aerobically and microaerophilically on Columbia blood agar after 1 day of incubation and as facultative anaerobe after 2 days of incubation.
[Ref.: #65271]	Observation	CAMP test is negative.
[Ref.: #67770]	Observation	quinones: MK-8(H₂), MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #65271]	esculin ChEBI	-	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #65271]	gelatin ChEBI	-	hydrolysis
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #65271]	glucose ChEBI	+	builds acid from
[Ref.: #65271]	glycogen ChEBI	-	builds acid from
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #65271]	lactose ChEBI	-	builds acid from
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #65271]	maltose ChEBI	+	builds acid from
[Ref.: #65271]	mannitol ChEBI	-	builds acid from
[Ref.: #65271]	nitrate ChEBI	-	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #65271]	ribose ChEBI	+	builds acid from
[Ref.: #65271]	sucrose ChEBI	-	builds acid from
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #65271]	urea ChEBI	-	hydrolysis
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #65271]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65271]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #65271]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #65271]	catalase	+	1.11.1.6
[Ref.: #65271]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #65271]	pyrazinamidase	+	3.5.1.B15
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #65271]	pyrrolidonyl arylamidase	+	3.4.19.3
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #42346]	4237	-	-	-	+	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	+
[Ref.: #42346]	4225	-	-	-	+	-	-	-	-	-	-	-	-	+	+	-	-	+/-	-	-	-	+
[Ref.: #42346]	4179	-	-	-	+	-	-	-	-	-	-	-	-	+	+/-	-	-	+/-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42346]	Sample type/isolated from	blood of a clinical patient
[Ref.: #42346]	Geographic location (country and/or sea, region)	Göttingen, Institut für Medizinische Mikrobiologie, University of Göttingen
[Ref.: #42346]	Country	Germany
[Ref.: #42346]	Country ISO 3 Code	DEU
[Ref.: #42346]	Continent	Europe

[Ref.: #65271]	Sample type/isolated from	blood sample of a clinical patient with bacteraemia of unknown origin
[Ref.: #65271]	Geographic location (country and/or sea, region)	Institute of Medical Microbiology, University of Göttingen
[Ref.: #65271]	Country	Germany
[Ref.: #65271]	Country ISO 3 Code	DEU
[Ref.: #65271]	Continent	Europe
[Ref.: #65271]	Enrichment culture	Columbia blood agar
[Ref.: #65271]	Enrichment culture duration	1 day
[Ref.: #65271]	Enrichment culture temperature	37 ̊C

[Ref.: #67770]	Sample type/isolated from	Blood of a patient with bacteraemia at the Institute of Medical Microbiology
[Ref.: #67770]	Geographic location (country and/or sea, region)	Göttingen
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe

[Ref.: #119716]	Sample type/isolated from	Human, Blood
[Ref.: #119716]	Geographic location (country and/or sea, region)	Göttingen
[Ref.: #119716]	Country	Germany
[Ref.: #119716]	Country ISO 3 Code	DEU
[Ref.: #119716]	Continent	Europe
[Ref.: #119716]	Isolation date	2016-05-11
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Blood
#Infection	#Medical environment	#Clinic
#Infection	#Patient	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42346]	Pathogenicity (human)	yes, in single cases
[Ref.: #42346]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119716]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42346]	Corynebacterium gottingense strain 99221/2016 16S ribosomal RNA gene, partial sequence	KY593177	1492	ENA	2041036 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Corynebacterium gottingense DSM 103494	GCA_003693265	contig	GenBank	2041036 tax ID
[Ref.: #66792]	Corynebacterium gottingense strain DSM 103494	2041036.3	wgs	PATRIC	2041036 tax ID	*
[Ref.: #66792]	Corynebacterium gottingense DSM 103494	2862065897	draft	JGI IMG/M	2041036 tax ID	*

[Ref.: #42346]

GC-content

69.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Corynebacterium gottingense strain DSM 103494 PATRIC: 2041036.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium gottingense strain DSM 103494 PATRIC: 2041036.3
[Ref.: #69480]	motile	no	92.758	no
[Ref.: #69480]	gram-positive	yes	93.988	yes
[Ref.: #69480]	anaerobic	no	99.11	no
[Ref.: #69480]	aerobic	yes	57.248	no
[Ref.: #69480]	halophile	yes	60.567	no
[Ref.: #69480]	spore-forming	no	94.019	yes
[Ref.: #69480]	glucose-util	yes	83.07	no
[Ref.: #69480]	flagellated	no	96.812	no
[Ref.: #69480]	thermophile	no	96.817	no
[Ref.: #69480]	glucose-ferment	yes	57.064	yes

Availability in culture collections External links

[Ref.: #42346]

Culture collection no.

DSM 103494, CIP 111599, JCM 31931

[Ref.: #96187]

SI-ID 402618

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium godavarianum Jani et al. 2018 and Corynebacterium hadale Wei et al. 2018 are both later heterotypic synonyms of Corynebacterium gottingense Atasayar et al. 2017, proposal of an emended description of Corynebacterium gottingense Atasayar et al. 2017.	Bernard KA, Pacheco AL, Burdz T, Wiebe D, Bernier AM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004153	2020	*
Phylogeny	Corynebacterium gottingense sp. nov., isolated from a clinical patient.	Atasayar E, Zimmermann O, Sproer C, Schumann P, Gross U	Int J Syst Evol Microbiol	10.1099/ijsem.0.002322	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42346

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103494

#65271

Ewelina Atasayar, Ortrud Zimmermann, Cathrin Spröer, Peter Schumann, Uwe Groß: Corynebacterium gottingense sp. nov., isolated from a clinical patient. IJSEM 67: 4494 - 4499 2017 ( DOI 10.1099/ijsem.0.002322 , PubMed 28950931 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96187

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402618.1 )

#119716 Collection of Institut Pasteur ; Curators of the CIP; CIP 111599
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Corynebacterium gottingense in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Corynebacterium gottingense strain DSM 103494

Corynebacterium gottingense strain DSM 103494

Change proposal

Change proposal