Corynebacterium gottingense (DSM 103494, CIP 111599, JCM 31931)

Name: Corynebacterium gottingense (DSM 103494, CIP 111599, JCM 31931)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139735

Type strain

Strain Designation 99221/2016

Culture col. no. DSM 103494 CIP 111599 JCM 31931 99221/2016

NCBI tax ID(s) 2041036

Special Collections DSMZ JCM CIP Literature strains

Links

Corynebacterium gottingense 99221/2016 is a mesophilic, Gram-positive, rod-shaped prokaryote that forms circular colonies and was isolated from blood of a clinical patient.

Gram-positive rod-shaped colony-forming mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402618

JCM 31931,DSM 103494,CIP 111599,CCUG 75230T

@ref 20215

Last LPSN update 2025-12-16 10:03:25

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium gottingense

Full scientific name Corynebacterium gottingense Atasayar et al. 2017

Synonyms (2)

Corynebacterium godavarianum
Corynebacterium hadale

BacDive ID	Other strains from **Corynebacterium gottingense** (3)	Type strain
158231	C. gottingense 99221/2016 - low, DSM 108039
158232	C. gottingense 99221/2016 - high, DSM 108986
158398	C. gottingense NBT06-6, NBT06-06, DSM 105365, MCCC 1K03347, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape
65271	positive	rod-shaped
125438
119716	positive	rod-shaped

Colony morphology

@ref	Colony color	Colony shape
65271	white-cream	circular

Multimedia

@ref:	42346
multimedia content:	DSM_103494.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_103494.jpg
caption:	Medium 693 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
42346	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
42346	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
119716	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
42346	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

65271

Spore formationno

Observation

@ref	Observation
65271	non-lipophilic
65271	Grows at 37 C aerobically and microaerophilically on Columbia blood agar after 1 day of incubation and as facultative anaerobe after 2 days of incubation.
65271	CAMP test is negative.
67770	quinones: MK-8(H₂), MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
65271	4853 ChEBI	esculin	-	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
65271	5291 ChEBI	gelatin	-	hydrolysis
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
65271	17234 ChEBI	glucose	+	builds acid from
65271	28087 ChEBI	glycogen	-	builds acid from
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
65271	17716 ChEBI	lactose	-	builds acid from
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
65271	17306 ChEBI	maltose	+	builds acid from
65271	29864 ChEBI	mannitol	-	builds acid from
65271	17632 ChEBI	nitrate	-	reduction
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
65271	33942 ChEBI	ribose	+	builds acid from
65271	17992 ChEBI	sucrose	-	builds acid from
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
65271	16199 ChEBI	urea	-	hydrolysis
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
65271	18222 ChEBI	xylose	-	builds acid from

Enzymes

@ref	Value	Activity	Ec
65271	alkaline phosphatase	+	3.1.3.1
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
65271	alpha-glucosidase	+	3.2.1.20
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
65271	catalase	+	1.11.1.6
65271	cytochrome oxidase	-	1.9.3.1
68379	gelatinase	-		from API Coryne
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
65271	pyrazinamidase	+	3.5.1.B15
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
65271	pyrrolidonyl arylamidase	+	3.4.19.3
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
42346	-	-	-	+	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	+
42346	-	-	-	+	-	-	-	-	-	-	-	-	+	+	-	-	+/-	-	-	-	+
42346	-	-	-	+	-	-	-	-	-	-	-	-	+	+/-	-	-	+/-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Blood
#Infection	#Medical environment	#Clinic
#Infection	#Patient	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
42346	blood of a clinical patient	Göttingen, Institut für Medizinische Mikrobiologie, University of Göttingen	Germany	DEU	Europe
65271	blood sample of a clinical patient with bacteraemia of unknown origin	Institute of Medical Microbiology, University of Göttingen	Germany	DEU	Europe
67770	Blood of a patient with bacteraemia at the Institute of Medical Microbiology	Göttingen	Germany	DEU	Europe
119716	Human, Blood	Göttingen	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
42346	yes, in single cases	1	Risk group (German classification)
119716		2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM369326v1 assembly for Corynebacterium gottingense DSM 103494	contig	GCA_003693265	2041036.3	2862065897	2041036	42.3

Genome browser: GCA_003693265

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42346	Corynebacterium gottingense strain 99221/2016 16S ribosomal RNA gene, partial sequence	KY593177	1492		2041036
124043	Corynebacterium gottingense strain DSM 103494 16S ribosomal RNA gene, partial sequence.	MW111199	659		2041036

GC content

@ref	GC-content (mol%)	Method
42346	69.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium gottingense DSM 103494
NCBI: GCA_003693265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	86.30	no
125439	motility	BacteriaNetⓘ	no	56.70	no
125439	gram_stain	BacteriaNetⓘ	positive	83.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	84.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium gottingense strain DSM 103494
PATRIC: 2041036.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.36	yes
125438	anaerobic	anaerobicⓘ	no	93.62	no
125438	spore-forming	spore-formingⓘ	no	79.32	no
125438	aerobic	aerobicⓘ	yes	56.07	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	94.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium godavarianum Jani et al. 2018 and Corynebacterium hadale Wei et al. 2018 are both later heterotypic synonyms of Corynebacterium gottingense Atasayar et al. 2017, proposal of an emended description of Corynebacterium gottingense Atasayar et al. 2017.	Bernard KA, Pacheco AL, Burdz T, Wiebe D, Bernier AM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004153	2020
Phylogeny	Corynebacterium gottingense sp. nov., isolated from a clinical patient.	Atasayar E, Zimmermann O, Sproer C, Schumann P, Gross U	Int J Syst Evol Microbiol	10.1099/ijsem.0.002322	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42346	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103494
#65271	Ewelina Atasayar, Ortrud Zimmermann, Cathrin Spröer, Peter Schumann, Uwe Groß: Corynebacterium gottingense sp. nov., isolated from a clinical patient. IJSEM 67: 4494 - 4499 2017 ( DOI 10.1099/ijsem.0.002322 , PubMed 28950931 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#119716	Collection of Institut Pasteur ; Curators of the CIP; CIP 111599
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium gottingense (DSM 103494, CIP 111599, JCM 31931)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Metabolite utilization

Enzymes

API coryne

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003693265

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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