Corynebacterium gottingense (DSM 105365, MCCC 1K03347, NBT06-6)

Name: Corynebacterium gottingense (DSM 105365, MCCC 1K03347, NBT06-6)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158398

Type strain

Strain Designation NBT06-6, NBT06-06

Culture col. no. DSM 105365 MCCC 1K03347 NBT06-6 CIP 111638 NBT06-06

NCBI tax ID(s) 2026255

Special Collections DSMZ Literature strains CIP

History <- Y. Wei, Shanghai Ocean University., College of Marine Sciences, Shanghai, P.R. China; NBT06-6 CIP <- 2018, Y. Wei, Shanghai Ocean Univ., Shanghai, China: strain NBT06-06

Links

Corynebacterium gottingense NBT06-6 is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from deep sea water.

Gram-positive rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 405766

DSM 105365

@ref 20215

Last LPSN update 2025-12-16 10:08:01

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium gottingense

Full scientific name Corynebacterium gottingense Atasayar et al. 2017

Synonyms (2)

Corynebacterium godavarianum
Corynebacterium hadale

BacDive ID	Other strains from **Corynebacterium gottingense** (3)	Type strain
139735	C. gottingense 99221/2016, DSM 103494, CIP 111599, JCM 31931 (type strain)
158231	C. gottingense 99221/2016 - low, DSM 108039
158232	C. gottingense 99221/2016 - high, DSM 108986

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
65550	positive	1.3 µm	0.57 µm	rod-shaped
119717	positive			flask-shaped

Colony morphology

@ref	Colony size	Colony color	Medium used
65550	1-2 mm	ivory-white	MA

Multimedia

@ref:	65074
multimedia content:	DSM_105365.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_105365.jpg
caption:	Medium 514 35°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
65074	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
65074	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
65550	Marine agar (MA)
119717	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65074	positive	growth	37	mesophilic
65074	positive	growth	35	mesophilic
65550	positive	growth	22-41
65550	positive	optimum	35	mesophilic

Physiology and metabolism

Oxygen tolerance

65550

Oxygen tolerancefacultative anaerobe

Spore formation

65550

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65550	NaCl	positive	growth	0-10 %(w/v)
65550	NaCl	positive	optimum	4 %(w/v)

Observation

65550

Observationoptimal growth at 10 MPa

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65550	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
65550	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
65550	27613 ChEBI	amygdalin	-	builds acid from
65550	18305 ChEBI	arbutin	-	builds acid from
65550	71422 ChEBI	beta-gentiobiose	-	builds acid from
65550	17057 ChEBI	cellobiose	-	builds acid from
65550	17108 ChEBI	D-arabinose	-	builds acid from
65550	18333 ChEBI	D-arabitol	+	builds acid from
65550	15824 ChEBI	D-fructose	+	builds acid from
65550	28847 ChEBI	D-fucose	-	builds acid from
65550	12936 ChEBI	D-galactose	-	builds acid from
65550	17634 ChEBI	D-glucose	+	builds acid from
65550	62318 ChEBI	D-lyxose	-	builds acid from
65550	16899 ChEBI	D-mannitol	+/-	builds acid from
65550	16024 ChEBI	D-mannose	+	builds acid from
65550	16988 ChEBI	D-ribose	+	builds acid from
65550	17924 ChEBI	D-sorbitol	-	builds acid from
65550	16443 ChEBI	D-tagatose	-	builds acid from
65550	65327 ChEBI	D-xylose	-	builds acid from
65550	17113 ChEBI	erythritol	-	builds acid from
65550	4853 ChEBI	esculin	-	hydrolysis
65550	16813 ChEBI	galactitol	-	builds acid from
65550	24265 ChEBI	gluconate	-	builds acid from
65550	17754 ChEBI	glycerol	-	builds acid from
65550	28087 ChEBI	glycogen	-	builds acid from
65550	15443 ChEBI	inulin	-	builds acid from
65550	30849 ChEBI	L-arabinose	-	builds acid from
65550	18403 ChEBI	L-arabitol	-	builds acid from
65550	18287 ChEBI	L-fucose	-	builds acid from
65550	62345 ChEBI	L-rhamnose	-	builds acid from
65550	17266 ChEBI	L-sorbose	-	builds acid from
65550	65328 ChEBI	L-xylose	-	builds acid from
65550	17716 ChEBI	lactose	-	builds acid from
65550	17306 ChEBI	maltose	+	builds acid from
65550	6731 ChEBI	melezitose	-	builds acid from
65550	28053 ChEBI	melibiose	-	builds acid from
65550	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
65550	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
65550	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
65550	17268 ChEBI	myo-inositol	-	builds acid from
65550	506227 ChEBI	N-acetylglucosamine	-	builds acid from
65550	17632 ChEBI	nitrate	-	reduction
65550	16634 ChEBI	raffinose	-	builds acid from
65550	15963 ChEBI	ribitol	+/-	builds acid from
65550	17814 ChEBI	salicin	-	builds acid from
65550	28017 ChEBI	starch	-	hydrolysis
65550	17992 ChEBI	sucrose	-	builds acid from
65550	27082 ChEBI	trehalose	+	builds acid from
65550	32528 ChEBI	turanose	-	builds acid from
65550	16199 ChEBI	urea	-	hydrolysis
65550	17151 ChEBI	xylitol	-	builds acid from

Enzymes

@ref	Value	Activity	Ec
65550	acid phosphatase	+	3.1.3.2
65550	alkaline phosphatase	+	3.1.3.1
65550	alpha-fucosidase	-	3.2.1.51
65550	alpha-galactosidase	-	3.2.1.22
65550	alpha-glucosidase	-	3.2.1.20
65550	alpha-mannosidase	-	3.2.1.24
65550	beta-galactosidase	-	3.2.1.23
65550	beta-glucosidase	-	3.2.1.21
65550	beta-glucuronidase	-	3.2.1.31
65550	catalase	+	1.11.1.6
65550	cytochrome oxidase	-	1.9.3.1
65550	esterase (C 4)	+
65550	esterase Lipase (C 8)	+
65550	leucine arylamidase	+	3.4.11.1
65550	lipase (C 14)	-
65550	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65550	phosphoamidase	+	3.9.1.1
65550	pyrazinamidase	+	3.5.1.B15
65550	pyrrolidonyl arylamidase	-	3.4.19.3
65550	trypsin	-	3.4.21.4
65550	valine aminopeptidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Sampling date	Enrichment culture	Enrichment culture duration	Isolation date
65074	deep sea water	New Britain Trench, Papua New Guinean Exclusive Economic Zone (6° 21' 43.9'' S, 153° 49' 51.8'' E)	Papua New Guinea	PNG	Australia and Oceania	-6.3622	153.831 -6.3622/153.831
65550	deep-sea water	New Britain Trench				-3.36	153.83 -3.36/153.83	2017-01-31	MA	3 days
119717	Environment, Deep seawater sample collected at a depth of 8900 m	New Britain Trench	Papua New Guinea	PNG	Australia and Oceania						2017-01-31

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
65074	yes, in single cases	1	Risk group (German classification)
119717		2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3044030v1 assembly for Corynebacterium hadale DSM 105365	complete	GCA_030440305	2026255.19	8116645280	2026255	99.2
65074	ASM227300v1 assembly for Corynebacterium hadale NBT06-6	contig	GCA_002273005	2026255.3	2862080457	2026255	64.14

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65074	Corynebacterium hadale 16S ribosomal RNA gene, partial sequence	MF576260	1395		2026255

GC content

@ref	GC-content (mol%)	Method
65550	65.1	genome sequence analysis

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium hadale sp. nov. isolated from hadopelagic water of the New Britain Trench.	Wei Y, Fang J, Xu Y, Zhao W, Cao J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002695	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65074	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105365
#65550	Yuli Wei, Jiasong Fang, Yunping Xu, Weiqiang Zhao and Junwei Cao: Corynebacterium hadale sp. nov. isolated from hadopelagic water of the New Britain Trench. IJSEM 68: 1474 - 1478 2018 ( DOI 10.1099/ijsem.0.002695 , PubMed 29557772 )
#119717	Collection of Institut Pasteur ; Curators of the CIP; CIP 111638
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium gottingense (DSM 105365, MCCC 1K03347, NBT06-6)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030440305

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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