Name: Corynebacterium gottingense NBT06-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158398

Type strain:

Species: Corynebacterium gottingense

Strain Designation: NBT06-6, NBT06-06

Culture col. no.: DSM 105365, MCCC 1K03347, CIP 111638

Strain history: CIP <- 2018, Y. Wei, Shanghai Ocean Univ., Shanghai, China: strain NBT06-06

NCBI tax ID(s): 2026255 (species)

SI-ID 405766

DSM 105365

Other strains from Corynebacterium gottingense

C. gottingense 99221/2016, DSM 103494, CIP 111599, ... (type strain)
C. gottingense 99221/2016 - low, DSM 108039
C. gottingense 99221/2016 - high, DSM 108986

Section

Corynebacterium gottingense NBT06-6 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from deep sea water.

Gram-positive
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium gottingense**
	Full Scientific Name (LPSN)	Corynebacterium gottingense Atasayar et al. 2017

	Synonym	Corynebacterium godavarianum
	Synonym	Corynebacterium hadale

Information on morphological and physiological properties Morphology

[Ref.: #65550]	Gram stain	positive
[Ref.: #119717]	Gram stain	positive

[Ref.: #65550]	Cell length	1.3 µm

[Ref.: #65550]	Cell width	0.57 µm

[Ref.: #65550]	Cell shape	rod-shaped
[Ref.: #119717]	Cell shape	flask-shaped

[Ref.: #65550]	Motility	no
[Ref.: #119717]	Motility	no

[Ref.: #65550]	Colony size	1-2 mm
[Ref.: #65550]	Colony color	ivory-white
[Ref.: #65550]	Cultivation medium used	MA

Multimedia content

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Caption:

Medium 514 35°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

CIP Medium 6

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #65074]	growth	37 °C
[Ref.: #65074]	growth	35 °C
[Ref.: #65550]	growth	22-41 °C
[Ref.: #65550]	optimum	35 °C

[Ref.: #65074]	Temperature range	mesophilic
[Ref.: #65550]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

facultative anaerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65550]		NaCl		growth	0-10	%(w/v)
[Ref.: #65550]		NaCl		optimum	4	%(w/v)

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Observation

optimal growth at 10 MPa

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65550]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #65550]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #65550]	amygdalin ChEBI	-	builds acid from
[Ref.: #65550]	arbutin ChEBI	-	builds acid from
[Ref.: #65550]	beta-gentiobiose ChEBI	-	builds acid from
[Ref.: #65550]	cellobiose ChEBI	-	builds acid from
[Ref.: #65550]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65550]	D-arabitol ChEBI	+	builds acid from
[Ref.: #65550]	D-fructose ChEBI	+	builds acid from
[Ref.: #65550]	D-fucose ChEBI	-	builds acid from
[Ref.: #65550]	D-galactose ChEBI	-	builds acid from
[Ref.: #65550]	D-glucose ChEBI	+	builds acid from
[Ref.: #65550]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65550]	D-mannitol ChEBI	+/-	builds acid from
[Ref.: #65550]	D-mannose ChEBI	+	builds acid from
[Ref.: #65550]	D-ribose ChEBI	+	builds acid from
[Ref.: #65550]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65550]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65550]	D-xylose ChEBI	-	builds acid from
[Ref.: #65550]	erythritol ChEBI	-	builds acid from
[Ref.: #65550]	esculin ChEBI	-	hydrolysis
[Ref.: #65550]	galactitol ChEBI	-	builds acid from
[Ref.: #65550]	gluconate ChEBI	-	builds acid from
[Ref.: #65550]	glycerol ChEBI	-	builds acid from
[Ref.: #65550]	glycogen ChEBI	-	builds acid from
[Ref.: #65550]	inulin ChEBI	-	builds acid from
[Ref.: #65550]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65550]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65550]	L-fucose ChEBI	-	builds acid from
[Ref.: #65550]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65550]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65550]	L-xylose ChEBI	-	builds acid from
[Ref.: #65550]	lactose ChEBI	-	builds acid from
[Ref.: #65550]	maltose ChEBI	+	builds acid from
[Ref.: #65550]	melezitose ChEBI	-	builds acid from
[Ref.: #65550]	melibiose ChEBI	-	builds acid from
[Ref.: #65550]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65550]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65550]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65550]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65550]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #65550]	nitrate ChEBI	-	reduction
[Ref.: #65550]	raffinose ChEBI	-	builds acid from
[Ref.: #65550]	ribitol ChEBI	+/-	builds acid from
[Ref.: #65550]	salicin ChEBI	-	builds acid from
[Ref.: #65550]	starch ChEBI	-	hydrolysis
[Ref.: #65550]	sucrose ChEBI	-	builds acid from
[Ref.: #65550]	trehalose ChEBI	+	builds acid from
[Ref.: #65550]	turanose ChEBI	-	builds acid from
[Ref.: #65550]	urea ChEBI	-	hydrolysis
[Ref.: #65550]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65550]	acid phosphatase	+	3.1.3.2
[Ref.: #65550]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65550]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65550]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65550]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65550]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65550]	beta-galactosidase	-	3.2.1.23
[Ref.: #65550]	beta-glucosidase	-	3.2.1.21
[Ref.: #65550]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65550]	catalase	+	1.11.1.6
[Ref.: #65550]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65550]	esterase (C 4)	+
[Ref.: #65550]	esterase Lipase (C 8)	+
[Ref.: #65550]	leucine arylamidase	+	3.4.11.1
[Ref.: #65550]	lipase (C 14)	-
[Ref.: #65550]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65550]	phosphoamidase	+	3.9.1.1
[Ref.: #65550]	pyrazinamidase	+	3.5.1.B15
[Ref.: #65550]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #65550]	trypsin	-	3.4.21.4
[Ref.: #65550]	valine aminopeptidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65074]	Sample type/isolated from	deep sea water
[Ref.: #65074]	Geographic location (country and/or sea, region)	New Britain Trench, Papua New Guinean Exclusive Economic Zone (6° 21' 43.9'' S, 153° 49' 51.8'' E)
[Ref.: #65074]	Country	Papua New Guinea
[Ref.: #65074]	Country ISO 3 Code	PNG
[Ref.: #65074]	Continent	Australia and Oceania
[Ref.: #65074]	Geographic location	-6.3622°/153.8310°

[Ref.: #65550]	Sample type/isolated from	deep-sea water
[Ref.: #65550]	Sampling date	2017-01-31
[Ref.: #65550]	Geographic location (country and/or sea, region)	New Britain Trench
[Ref.: #65550]	Geographic location	-3.3600°/153.8300°
[Ref.: #65550]	Enrichment culture	MA
[Ref.: #65550]	Enrichment culture duration	3 days

[Ref.: #119717]	Sample type/isolated from	Environment, Deep seawater sample collected at a depth of 8900 m
[Ref.: #119717]	Geographic location (country and/or sea, region)	New Britain Trench
[Ref.: #119717]	Country	Papua New Guinea
[Ref.: #119717]	Country ISO 3 Code	PNG
[Ref.: #119717]	Continent	Australia and Oceania
[Ref.: #119717]	Isolation date	2017-01-31
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #65074]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119717]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65074]	Corynebacterium sp. NBT06-6 16S ribosomal RNA gene, partial sequence	MF576260	1395	ENA	2026255 tax ID
[Ref.: #65074]	Corynebacterium hadale strain NBT06-6, whole genome shotgun sequencing project	NQMQ00000000	76	ENA	2026255 tax ID

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GC-content

65.1 mol%

genome sequence analysis

Availability in culture collections External links

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Culture collection no.

DSM 105365, MCCC 1K03347, CIP 111638

[Ref.: #111202]

SI-ID 405766

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium hadale sp. nov. isolated from hadopelagic water of the New Britain Trench.	Wei Y, Fang J, Xu Y, Zhao W, Cao J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002695	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65074

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105365

#65550

Yuli Wei, Jiasong Fang, Yunping Xu, Weiqiang Zhao and Junwei Cao: Corynebacterium hadale sp. nov. isolated from hadopelagic water of the New Britain Trench. IJSEM 68: 1474 - 1478 2018 ( DOI 10.1099/ijsem.0.002695 , PubMed 29557772 )

#111202

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405766.1 )

#119717 Collection of Institut Pasteur ; Curators of the CIP; CIP 111638
* These data were automatically processed and therefore are not curated

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