Corynebacterium fournieri (DSM 103271, Marseille-P2948, CSUR P2948)

Name: Corynebacterium fournieri (DSM 103271, Marseille-P2948, CSUR P2948)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139734

Type strain

Culture col. no. DSM 103271 Marseille-P2948 CSUR P2948

NCBI tax ID(s) 1852390

Special Collections DSMZ

History <- CHU Hopital de la Timone, Fédération de Bactériologie Virologie Hygiène Hospitalière; Marseille-P2948 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière; Marseille-P2948

Links

Corynebacterium fournieri DSM 103271 is a bacterium that was isolated from Vaginal sample from patient analysed in Marseille.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397396

DSM 103271

@ref 20215

Last LPSN update 2026-02-09 11:33:25

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium fournieri

Full scientific name Corynebacterium fournieri corrig. Diop et al. 2018

Synonyms (1)

Corynebacterium fournierii

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	96.4
125438		96
125438	positive	91.445

Multimedia

@ref:	42345
multimedia content:	DSM_103271.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_103271.jpg
caption:	Medium 535a 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42345	TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42345	positive	growth	37

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	-		from API 20NE
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
42345	-	+/-	-	-	-	+/-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
42345	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Urogenital tract	#Vagina
#Infection	#Patient	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
42345	Vaginal sample from patient analysed in Marseille	Marseille	France	FRA	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3040877v1 assembly for Corynebacterium fournieri DSM 103271	complete	GCA_030408775	1852390.5	8058170124	1852390	98.61
66792	PRJEB20393 assembly for Corynebacterium fournieri Marseille-P2948	scaffold	GCA_900176865	1852390.3	2862041466	1852390	56.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42345	Corynebacterium sp. Marseille-P2948 partial 16S rRNA gene, strain Marseille-P2948	LT576414	1481		1852390

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium fournieri Marseille-P2948
NCBI: GCA_900176865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	82.10	no
125439	motility	BacteriaNetⓘ	no	76.10	no
125439	gram_stain	BacteriaNetⓘ	positive	96.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	71.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium fournieri Marseille-P2948
NCBI: GCA_900176865.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.45	no
125438	anaerobic	anaerobicⓘ	no	93.91	no
125438	aerobic	aerobicⓘ	yes	52.78	no
125438	spore-forming	spore-formingⓘ	no	78.97	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	96.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Description of the genome sequence of Corynebacterium species (Marseille-Q4381).	Boxberger M, Rivoire S, Le Targa L, Cenizo V, La Scola B.	Microbiol Resour Announc	10.1128/mra.00707-24	2025
	Phylogenomic Reappraisal of Fatty Acid Biosynthesis, Mycolic Acid Biosynthesis and Clinical Relevance Among Members of the Genus Corynebacterium.	Dover LG, Thompson AR, Sutcliffe IC, Sangal V.	Front Microbiol	10.3389/fmicb.2021.802532	2021
Genetics	Expanding the Bacterial Diversity of the Female Urinary Microbiome: Description of Eight New Corynebacterium Species.	Cappelli EA, Ksiezarek M, Wolf J, Neumann-Schaal M, Ribeiro TG, Peixe L.	Microorganisms	10.3390/microorganisms11020388	2023
	Summary of Novel Bacterial Isolates Derived from Human Clinical Specimens and Nomenclature Revisions Published in 2018 and 2019.	Munson E, Carroll KC.	J Clin Microbiol	10.1128/jcm.01309-20	2021
	'Corynebacterium fournierii,' a new bacterial species isolated from the vaginal sample of a patient with bacterial vaginosis.	Diop K, Bretelle F, Raoult D, Fenollar F	New Microbes New Infect	10.1016/j.nmni.2017.03.005	2017
Phylogeny	Corynebacterium guaraldiae sp. nov.: a new species of Corynebacterium from human infections.	de Oliveira Sant'Anna L, Dos Santos LS, Araujo MRB, da Rocha DJPG, Ramos JN, Baio PVP, Del Peloso PF, da Costa Ferreira Leite C, Peixoto RS, Almuzara M, Vay C, Barberis C, Sangal V, Burkovski A, Aguiar ERGR, Mattos-Guaraldi AL, Pacheco LGC, Vieira VV.	Braz J Microbiol	10.1007/s42770-023-00938-y	2023
Phylogeny	Corynebacterium fournierii sp. nov., isolated from the female genital tract of a patient with bacterial vaginosis.	Diop K, Nguyen TT, Delerce J, Armstrong N, Raoult D, Bretelle F, Fenollar F	Antonie Van Leeuwenhoek	10.1007/s10482-018-1022-z	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42345	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103271
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium fournieri (DSM 103271, Marseille-P2948, CSUR P2948)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_030408775

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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