Enterococcus avium (CIP 104054, ATCC 49464, AmMS 239)

Name: Enterococcus avium (CIP 104054, ATCC 49464, AmMS 239)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 138669

Type strain

Strain Designation AmMS 239

Culture col. no. CIP 104054 ATCC 49464 AmMS 239

NCBI tax ID(s) 33945

Special Collections CIP

Links

Enterococcus avium AmMS 239 is a mesophilic prokaryote of the family Enterococcaceae.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 42493

ATCC 49464,CIP 104054

@ref 20215

Last LPSN update 2025-12-16 10:03:07

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Enterococcus

Species Enterococcus avium

Full scientific name Enterococcus avium (ex Nowlan and Deibel 1967) Collins et al. 1984

BacDive ID	Other strains from **Enterococcus avium** (16)	Type strain
5270	E. avium E6844, W17, DSM 20679, ATCC 14025, NCDO 2369, ... (type strain)
5269	E. avium R 6566, DSM 20063, JCM 5700
135961	E. avium D 373, CIP 82.12
136236	E. avium AmMS 237, CIP 103629, ATCC 49462
136254	E. avium AmMS 112, CIP 104053, ATCC 49463
146195	E. avium CCUG 30570, CCM 4050
148009	E. avium CCUG 34661, LMG 16309
148012	E. avium CCUG 34669, LMG 16310
151792	E. avium CCUG 44888
154038	E. avium CCUG 52072
155305	E. avium CCUG 57268
155336	E. avium CCUG 57363
155356	E. avium CCUG 57437
155546	E. avium CCUG 58087
155690	E. avium CCUG 59013
169219	E. avium S68, TW200-6-DD-B, DSM 106040

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
40313	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
40313	CIP Medium 29			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
40313	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
40313	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2540285v1 assembly for Enterococcus raffinosus ATCC 49464	complete	GCA_025402855	71452.62		71452	93.59
66792	Ente_raff_ATCC49464_V2 assembly for Enterococcus raffinosus ATCC 49464	contig	GCA_000407525	1158602.4	2545824669	1158602	72.29
66792	Ente_raff_ATCC49464_V1 assembly for Enterococcus raffinosus ATCC 49464	scaffold	GCA_000393895	1158602.3	2558860911	1158602	69.26

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Enterococcus raffinosus ATCC 49464
NCBI: GCA_025402855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	79.60	no
125439	gram_stain	BacteriaNetⓘ	variable	78.10	no
125439	motility	BacteriaNetⓘ	yes	77.60	no
125439	spore_formation	BacteriaNetⓘ	yes	82.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Enterococcus raffinosus ATCC 49464
NCBI: GCA_025402855.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.11	no
125438	anaerobic	anaerobicⓘ	no	86.39	no
125438	aerobic	aerobicⓘ	no	90.50	no
125438	spore-forming	spore-formingⓘ	no	73.98	no
125438	thermophilic	thermophileⓘ	no	94.00	no
125438	flagellated	motile2+ⓘ	no	86.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Improved Quantitative Real-Time PCR Protocol for Detection and Quantification of Methanogenic Archaea in Stool Samples.	Cisek AA, Bak I, Cukrowska B.	Microorganisms	10.3390/microorganisms11030660	2023
	Complete genome sequence of bile-isolated Enterococcus avium strain 352.	Yu T, Li L, Zhao Q, Wang P, Zuo X.	Gut Pathog	10.1186/s13099-019-0294-9	2019
Enzymology	Real-time quantitative PCR assay development and application for assessment of agricultural surface water and various fecal matter for prevalence of Aliarcobacter faecis and Aliarcobacter lanthieri.	Miltenburg MG, Cloutier M, Craiovan E, Lapen DR, Wilkes G, Topp E, Khan IUH.	BMC Microbiol	10.1186/s12866-020-01826-3	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40313	Collection of Institut Pasteur ; Curators of the CIP; CIP 104054
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Enterococcus avium (CIP 104054, ATCC 49464, AmMS 239)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_025402855

Genome-based predictions

Predictions

Literature

Literature

References

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