Enterococcus avium (DSM 20679, ATCC 14025, NCDO 2369)

Name: Enterococcus avium (DSM 20679, ATCC 14025, NCDO 2369)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5270

Type strain

Strain Designation E6844, W17

Culture col. no. DSM 20679 ATCC 14025 NCDO 2369 NCTC 9938 CCUG 7983 14 more

NCBI tax ID(s) 1140002 33945

Special Collections DSMZ CCUG JCM CIP

Links

Enterococcus avium E6844 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from human faeces.

Gram-positive coccus-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 2238

LMG 10744,ATCC 14025,DSM 20679,NCFB 2369,NCTC 9938,NBIMCC 983,JCM 8722,NCDO 2369,CCUG 7983,CIP 103019,IMET 3257,NCIMB 702369,CCM 4049,VKM B-1673,CECT 968,CCRC 14728,NBRC 100477,BCRC 10801,CCRC 10801,BCRC 14728,KCTC 5190,CGMCC 1.2505,VTT E-97804

@ref 20215

Last LPSN update 2025-12-16 09:48:01

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Enterococcus

Species Enterococcus avium

Full scientific name Enterococcus avium (ex Nowlan and Deibel 1967) Collins et al. 1984

BacDive ID	Other strains from **Enterococcus avium** (16)	Type strain
5269	E. avium R 6566, DSM 20063, JCM 5700
135961	E. avium D 373, CIP 82.12
136236	E. avium AmMS 237, CIP 103629, ATCC 49462
136254	E. avium AmMS 112, CIP 104053, ATCC 49463
138669	E. avium AmMS 239, CIP 104054, ATCC 49464
146195	E. avium CCUG 30570, CCM 4050
148009	E. avium CCUG 34661, LMG 16309
148012	E. avium CCUG 34669, LMG 16310
151792	E. avium CCUG 44888
154038	E. avium CCUG 52072
155305	E. avium CCUG 57268
155336	E. avium CCUG 57363
155356	E. avium CCUG 57437
155546	E. avium CCUG 58087
155690	E. avium CCUG 59013
169219	E. avium S68, TW200-6-DD-B, DSM 106040

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116670	positive	coccus-shaped

Colony morphology

116670

Hemolysis ability1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9001	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
9001	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40509	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
116670	CIP Medium 29	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9001	positive	growth	37	mesophilic
40509	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
116670	positive	growth	10-41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
9001	microaerophile
116670	facultative anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116670	NaCl	positive	growth	6.5 %

Murein

@ref	Murein short key	Type
9001	A11.31	A4alpha L-Lys-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	+	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	+	builds acid from	from API 50CH acid
68381	16899 ChEBI	D-mannitol	+	builds acid from	from API rID32STR
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68381	16988 ChEBI	D-ribose	+	builds acid from	from API rID32STR
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68381	16443 ChEBI	D-tagatose	+	builds acid from	from API rID32STR
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
116670	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68381	30849 ChEBI	L-arabinose	+	builds acid from	from API rID32STR
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	+	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	+	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68381	6731 ChEBI	melezitose	+	builds acid from	from API rID32STR
68371	6731 ChEBI	melezitose	+	builds acid from	from API 50CH acid
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from	from API 50CH acid
68381	320055 ChEBI	methyl beta-D-glucopyranoside	+	builds acid from	from API rID32STR
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
116670	17632 ChEBI	nitrate	-	reduction
116670	17632 ChEBI	nitrate	+	respiration
116670	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	+	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68381	30911 ChEBI	sorbitol	+	builds acid from	from API rID32STR
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68371	17151 ChEBI	xylitol	+	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68381	15688 ChEBI	acetoin	+	from API rID32STR
116670	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68381	Alanyl-Phenylalanyl-Proline arylamidase	+		from API rID32STR
116670	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68381	alkaline phosphatase	-	3.1.3.1	from API rID32STR
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68382	beta-galactosidase	-	3.2.1.23	from API zym
116670	beta-galactosidase	-	3.2.1.23
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68382	beta-glucosidase	+	3.2.1.21	from API zym
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
116670	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116670	gamma-glutamyltransferase	-	2.3.2.2
68381	glycyl tryptophan arylamidase	+		from API rID32STR
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116670	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116670	ornithine decarboxylase	-	4.1.1.17
116670	oxidase	-
68381	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32STR
68382	trypsin	-	3.4.21.4	from API zym
68381	urease	-	3.5.1.5	from API rID32STR
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	pentose phosphate pathway	100	11 of 11
66794	cardiolipin biosynthesis	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	acetate fermentation	100	4 of 4
66794	acetoin degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	ribulose monophosphate pathway	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	threonine metabolism	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	pyrimidine metabolism	88.89	40 of 45
66794	chorismate metabolism	88.89	8 of 9
66794	degradation of sugar alcohols	87.5	14 of 16
66794	purine metabolism	80.85	76 of 94
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	starch degradation	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	cellulose degradation	80	4 of 5
66794	vitamin B12 metabolism	79.41	27 of 34
66794	photosynthesis	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	phenylalanine metabolism	76.92	10 of 13
66794	ketogluconate metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	methionine metabolism	73.08	19 of 26
66794	vitamin B6 metabolism	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	propanol degradation	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	urea cycle	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	methane metabolism	66.67	2 of 3
66794	non-pathway related	65.79	25 of 38
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	heme metabolism	64.29	9 of 14
66794	oxidative phosphorylation	63.74	58 of 91
66794	d-xylose degradation	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	degradation of hexoses	61.11	11 of 18
66794	NAD metabolism	61.11	11 of 18
66794	degradation of pentoses	60.71	17 of 28
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	d-mannose degradation	55.56	5 of 9
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	tryptophan metabolism	55.26	21 of 38
66794	leucine metabolism	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	pantothenate biosynthesis	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	CMP-KDO biosynthesis	50	2 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	sulfopterin metabolism	50	2 of 4
66794	myo-inositol biosynthesis	50	5 of 10
66794	biotin biosynthesis	50	2 of 4
66794	propionate fermentation	50	5 of 10
66794	phenylmercury acetate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	toluene degradation	50	2 of 4
66794	adipate degradation	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	lysine metabolism	45.24	19 of 42
66794	lipid metabolism	45.16	14 of 31
66794	citric acid cycle	42.86	6 of 14
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	mevalonate metabolism	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	ascorbate metabolism	40.91	9 of 22
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	degradation of sugar acids	36	9 of 25
66794	tyrosine metabolism	35.71	5 of 14
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	enterobactin biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	phenol degradation	30	6 of 20
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	arachidonic acid metabolism	22.22	4 of 18
66794	nitrate assimilation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116670	-	-	+	+	-	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116670	not determinedn.d.	+	-	-	+	+	-	-	+	-	+	+	+	+	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	+	-	-	-	+	+	-	+	+	-	-	+	+	+/-	-	-

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
9001	-	+	-	-	-	-	+	+	+	+/-	+	-	+/-	+	-	-	+	+	-	+	-	+	-	-	-	+	-	+	+	+	-	-
9001	-	+	-	-	-	-	+	+	+	+	+	-	+	+	+	-	+	+	-	+	-	+	-	-	-	+	-	+	+	+	+/-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116670	not determinedn.d.	+	+	+	+	+	-	-	-	-	-	+	+	-	-	-	+	-	+	+	+	+	-	-	-	-	+	+	+	-	-	+	-	-	+	-	-	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type
9001	human faeces
67770	Human feces
116670	Human, Faeces

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9001	2	Risk group (German classification) According to TRBA 466
116670	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	51485_G01 assembly for Enterococcus avium NCTC9938	contig	GCA_900447655	33945.10	8032361062	33945	71.44
66792	Ente_aviu_ATCC14025_V2 assembly for Enterococcus avium ATCC 14025	scaffold	GCA_000407245	1140002.4	2545824652	1140002	70.53
66792	Ente_aviu_ATCC14025_V1 assembly for Enterococcus avium ATCC 14025	scaffold	GCA_000406965	1140002.3	2541047449	1140002	62.51
66792	ASM188577v1 assembly for Enterococcus avium DSM 20679	scaffold	GCA_001885775	33945.4		33945	34.77

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Enterococcus avium strain BCRC 10801 16S-23S ribosomal RNA intergenic spacer, complete sequence	AY351315	239	1140002
20218	Enterococcus avium gene for 16S ribosomal RNA, partial sequence	D31674	166	1140002
20218	E.avium 16S rRNA gene, partial (strain ATTC 14025 (CCUG 7983))	Y12907	366	1140002
9001	Enterococcus avium strain ATCC 14025 16S ribosomal RNA gene, partial sequence	DQ411811	1481	1140002
67770	Enterococcus avium 16S ribosomal RNA gene, partial sequence	AF133535	1524	1140002
67770	Enterococcus avium 16S rRNA gene, strain LMG 10744	AJ301825	1833	1140002
67770	Enterococcus avium gene for 16S ribosomal RNA, partial sequence, strain: JCM 8722	LC096212	1498	33945
67770	Enterococcus avium (strain NCFB 2369T) 16S rRNA gene	Y18274	1429	1140002
124043	Enterococcus avium gene for 16S rRNA, partial sequence, strain: NBRC 100477.	AB681175	1484	1140002

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Enterococcus avium ATCC 14025
NCBI: GCA_000407245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	81.40	no
125439	gram_stain	BacteriaNetⓘ	positive	76.80	no
125439	motility	BacteriaNetⓘ	no	51.10	no
125439	spore_formation	BacteriaNetⓘ	yes	67.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Enterococcus avium ATCC 14025 ATCC 14025
NCBI: GCA_000407245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.22	no
125438	anaerobic	anaerobicⓘ	no	86.04	yes
125438	aerobic	aerobicⓘ	no	88.60	yes
125438	spore-forming	spore-formingⓘ	no	69.61	no
125438	thermophilic	thermophileⓘ	no	91.80	no
125438	flagellated	motile2+ⓘ	no	85.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Hydrolytic fate of deoxynivalenol-3-glucoside during digestion.	Berthiller F, Krska R, Domig KJ, Kneifel W, Juge N, Schuhmacher R, Adam G.	Toxicol Lett	10.1016/j.toxlet.2011.08.006	2011
	A Complementary Isothermal Amplification Method to the U.S. EPA Quantitative Polymerase Chain Reaction Approach for the Detection of Enterococci in Environmental Waters.	Kolm C, Martzy R, Brunner K, Mach RL, Krska R, Heinze G, Sommer R, Reischer GH, Farnleitner AH.	Environ Sci Technol	10.1021/acs.est.7b01074	2017
	Stimulation of monokine production by lipoteichoic acids.	Bhakdi S, Klonisch T, Nuber P, Fischer W.	Infect Immun	10.1128/iai.59.12.4614-4620.1991	1991
Genetics	Phenomics and genomic features of Enterococcus avium IRMC1622a isolated from a clinical sample of hospitalized patient.	AlJindan R, Mahmoud N, AlEraky DM, Almandil NB, AbdulAzeez S, Borgio JF.	J Infect Public Health	10.1016/j.jiph.2024.05.051	2024
	alpha-Lipoic acid increases phagocytosis of some lactic acid bacteria via modulation of CD36 expression.	Nomura N, Miyadai N, Kawase I.	Biosci Microbiota Food Health	10.12938/bmfh.2024-019	2025
	The efficacy of a regimen comprising clarithromycin, clofazimine, and bedaquiline in a mouse model of chronic Mycobacterium avium lung infection.	Rimal B, Howe RA, Panthi C, Lamichhane G.	Antimicrob Agents Chemother	10.1128/aac.01853-24	2025
	Improved Quantitative Real-Time PCR Protocol for Detection and Quantification of Methanogenic Archaea in Stool Samples.	Cisek AA, Bak I, Cukrowska B.	Microorganisms	10.3390/microorganisms11030660	2023
	Complete genome sequence of bile-isolated Enterococcus avium strain 352.	Yu T, Li L, Zhao Q, Wang P, Zuo X.	Gut Pathog	10.1186/s13099-019-0294-9	2019
	Effects of Carbohydrates on Rosmarinic Acid Production and In Vitro Antimicrobial Activities in Hairy Root Cultures of Agastache rugosa.	Yeo HJ, Kwon MJ, Han SY, Jeong JC, Kim CY, Park SU, Park CH.	Plants (Basel)	10.3390/plants12040797	2023
	An Evaluation of the Sensitivity and Applicability of a Droplet Digital Polymerase Chain Reaction Assay to Simultaneously Detect Pseudomonas aeruginosa and Pseudomonas fragi in Foods.	Huang J, Zhai L, Wang J, Sun X, Wang B, Wei Z.	Foods	10.3390/foods13101453	2024
	Isolation and Molecular Identification of Lactic Acid Bacteria Using 16s rRNA Genes from Fermented Teff (Eragrostis tef (Zucc.)) Dough.	Tilahun B, Tesfaye A, Muleta D, Bahiru A, Terefework Z, Wessel G.	Int J Food Sci	10.1155/2018/8510620	2018
Genetics	Genome Mining for Antimicrobial Compounds in Wild Marine Animals-Associated Enterococci.	Prichula J, Primon-Barros M, Luz RCZ, Castro IMS, Paim TGS, Tavares M, Ligabue-Braun R, d'Azevedo PA, Frazzon J, Frazzon APG, Seixas A, Gilmore MS.	Mar Drugs	10.3390/md19060328	2021
	Development and Validation of PCR Diagnostic Assays for Detection of Avibacterium paragallinarum and Ornithobacterium rhinotracheale.	Krylova E, Bogomazova A, Kirsanova N, Putintseva A, Gorbacheva N, Prasolova O, Soltynskaya I, Ivanova O.	Vet Sci	10.3390/vetsci11010007	2023
Enzymology	In Vitro Evaluation of Probiotic Properties of Lactic Acid Bacteria from the Gut of Labeo rohita and Catla catla.	Sahoo TK, Jena PK, Nagar N, Patel AK, Seshadri S.	Probiotics Antimicrob Proteins	10.1007/s12602-015-9184-8	2015
	Comparative in silico analysis of ftsZ gene from different bacteria reveals the preference for core set of codons in coding sequence structuring and secondary structural elements determination.	Pal A, Saha BK, Saha J.	PLoS One	10.1371/journal.pone.0219231	2019
Metabolism	Accumulation of gamma-aminobutyric acid by Enterococcus avium 9184 in scallop solution in a two-stage fermentation strategy.	Yang H, Xing R, Hu L, Liu S, Li P.	Microb Biotechnol	10.1111/1751-7915.12301	2016
	Proposal of a Method for Harmonized Broth Microdilution Antimicrobial Susceptibility Testing of Avibacterium gallinarum.	Gutgemann F, Muller A, Churin Y, Jung A, Kumm F, Heuvelink A, Yue M, Kehrenberg C.	J Clin Microbiol	10.1128/jcm.00419-22	2022
Pathogenicity	New combinations of mutations in VanD-Type vancomycin-resistant Enterococcus faecium, Enterococcus faecalis, and Enterococcus avium strains.	Depardieu F, Foucault ML, Bell J, Dubouix A, Guibert M, Lavigne JP, Levast M, Courvalin P.	Antimicrob Agents Chemother	10.1128/aac.01348-08	2009
	Characterization of a New Immunosuppressive and Antimicrobial Peptide, DRS-DA2, Isolated from the Mexican Frog, Pachymedusa dacnicolor.	Lacombe C, Aleman-Navaro E, Drujon T, Martinez-Osorio V, Sachon E, Melchy-Perez E, Carlier L, Fajardo Brigido LE, Fleury Y, Piesse C, Gutierrez-Escobedo G, De Las Penas A, Castano I, Desriac F, Beristain-Hernandez JL, Combadiere C, Rosenstein Y, Auvynet C.	Int J Inflam	10.1155/2024/2205864	2024
	Development of a Colloidal Gold-Based Immunochromatographic Strip for Rapid Detection of Klebsiella pneumoniae Serotypes K1 and K2.	Siu LK, Tsai YK, Lin JC, Chen TL, Fung CP, Chang FY.	J Clin Microbiol	10.1128/jcm.01608-16	2016
	Use of tuf as a target for sequence-based identification of Gram-positive cocci of the genus Enterococcus, Streptococcus, coagulase-negative Staphylococcus, and Lactococcus.	Li X, Xing J, Li B, Wang P, Liu J.	Ann Clin Microbiol Antimicrob	10.1186/1476-0711-11-31	2012
	Molecular and genetic characterization of a novel bacteriocin locus in Enterococcus avium isolates from infants.	Birri DJ, Brede DA, Forberg T, Holo H, Nes IF.	Appl Environ Microbiol	10.1128/aem.01597-09	2010
Enzymology	Rapid identification of clinically relevant Enterococcus species by fluorescence in situ hybridization.	Wellinghausen N, Bartel M, Essig A, Poppert S.	J Clin Microbiol	10.1128/jcm.00861-07	2007
	Experimental inoculation of BFDV-positive budgerigars (Melopsittacus undulatus) with two Mycobacterium avium subsp. avium isolates.	Ledwon A, Sapierzynski R, Augustynowicz-Kopec E, Szeleszczuk P, Kozak M.	Biomed Res Int	10.1155/2014/418563	2014
Metabolism	A Novel Enterococcus faecalis Heme Transport Regulator (FhtR) Senses Host Heme To Control Its Intracellular Homeostasis.	Saillant V, Lipuma D, Ostyn E, Joubert L, Boussac A, Guerin H, Brandelet G, Arnoux P, Lechardeur D.	mBio	10.1128/mbio.03392-20	2021
	In vitro antibacterial and cytotoxic activity of leaf extracts of Centella asiatica (L.) Urb, Warburgia salutaris (Bertol. F.) Chiov and Curtisia dentata (Burm. F.) C.A.Sm - medicinal plants used in South Africa.	Soyingbe OS, Mongalo NI, Makhafola TJ.	BMC Complement Altern Med	10.1186/s12906-018-2378-3	2018
Pathogenicity	Linezolid-resistant enterococci in Polish hospitals: species, clonality and determinants of linezolid resistance.	Gawryszewska I, Zabicka D, Hryniewicz W, Sadowy E.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-017-2934-7	2017
Enzymology	Rapid detection of Gram-positive organisms by use of the Verigene Gram-positive blood culture nucleic acid test and the BacT/Alert Pediatric FAN system in a multicenter pediatric evaluation.	Sullivan KV, Turner NN, Roundtree SS, Young S, Brock-Haag CA, Lacey D, Abuzaid S, Blecker-Shelly DL, Doern CD.	J Clin Microbiol	10.1128/jcm.01224-13	2013
	Diversity of domain V of 23S rRNA gene sequence in different Enterococcus species.	Tsiodras S, Gold HS, Coakley EP, Wennersten C, Moellering RC, Eliopoulos GM.	J Clin Microbiol	10.1128/jcm.38.11.3991-3993.2000	2000
Metabolism	F-Type Bacteriocins of Listeria monocytogenes: a New Class of Phage Tail-Like Structures Reveals Broad Parallel Coevolution between Tailed Bacteriophages and High-Molecular-Weight Bacteriocins.	Lee G, Chakraborty U, Gebhart D, Govoni GR, Zhou ZH, Scholl D.	J Bacteriol	10.1128/jb.00489-16	2016
	Development and evaluation of oligonucleotide chip based on the 16S-23S rRNA gene spacer region for detection of pathogenic microorganisms associated with sepsis.	Kim CM, Song ES, Jang HJ, Kim HJ, Lee S, Shin JH, Kim SJ, Jeong SH, Jeong J, Koh K, Choi GE, Lee EY, Chang CL.	J Clin Microbiol	10.1128/jcm.01130-09	2010
Pathogenicity	Mycobacterium avium Subspecies paratuberculosis Recombinant Proteins Modulate Antimycobacterial Functions of Bovine Macrophages.	Bannantine JP, Stabel JR, Laws E, D Cardieri MC, Souza CD.	PLoS One	10.1371/journal.pone.0128966	2015
	Development of a PCR assay for rapid detection of enterococci.	Ke D, Picard FJ, Martineau F, Menard C, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.37.11.3497-3503.1999	1999
Phylogeny	Species identification of enterococci via intergenic ribosomal PCR.	Tyrrell GJ, Bethune RN, Willey B, Low DE.	J Clin Microbiol	10.1128/jcm.35.5.1054-1060.1997	1997
Enzymology	16S-23S Internal Transcribed Spacer Region PCR and Sequencer-Based Capillary Gel Electrophoresis has Potential as an Alternative to High Performance Liquid Chromatography for Identification of Slowly Growing Nontuberculous Mycobacteria.	Subedi S, Kong F, Jelfs P, Gray TJ, Xiao M, Sintchenko V, Chen SC.	PLoS One	10.1371/journal.pone.0164138	2016
Phylogeny	Identification of Enterococcus species and phenotypically similar Lactococcus and Vagococcus species by reverse checkerboard hybridization to chaperonin 60 gene sequences.	Goh SH, Facklam RR, Chang M, Hill JE, Tyrrell GJ, Burns EC, Chan D, He C, Rahim T, Shaw C, Hemmingsen SM.	J Clin Microbiol	10.1128/jcm.38.11.3953-3959.2000	2000
	The role of macrophage activation and of Bcg-encoded macrophage function(s) in the control of Mycobacterium avium infection in mice.	Appelberg R, Sarmento AM.	Clin Exp Immunol	10.1111/j.1365-2249.1990.tb03288.x	1990
Phylogeny	Sequencing the gene encoding manganese-dependent superoxide dismutase for rapid species identification of enterococci.	Poyart C, Quesnes G, Trieu-Cuot P.	J Clin Microbiol	10.1128/jcm.38.1.415-418.2000	2000
	Evidence for horizontal gene transfer in evolution of elongation factor Tu in enterococci.	Ke D, Boissinot M, Huletsky A, Picard FJ, Frenette J, Ouellette M, Roy PH, Bergeron MG.	J Bacteriol	10.1128/jb.182.24.6913-6920.2000	2000
Phylogeny	New quadriplex PCR assay for detection of methicillin and mupirocin resistance and simultaneous discrimination of Staphylococcus aureus from coagulase-negative staphylococci.	Zhang K, Sparling J, Chow BL, Elsayed S, Hussain Z, Church DL, Gregson DB, Louie T, Conly JM.	J Clin Microbiol	10.1128/jcm.42.11.4947-4955.2004	2004
Phylogeny	Identification of clinically relevant enterococcus species by direct sequencing of groES and spacer region.	Tsai JC, Hsueh PR, Lin HM, Chang HJ, Ho SW, Teng LJ.	J Clin Microbiol	10.1128/jcm.43.1.235-241.2005	2005
Genetics	Whole-genome analysis of mycobacteria from birds at the San Diego Zoo.	Pfeiffer W, Braun J, Burchell J, Witte CL, Rideout BA.	PLoS One	10.1371/journal.pone.0173464	2017
Metabolism	Stereoselective microbial dehalorespiration with vicinal dichlorinated alkanes.	De Wildeman S, Diekert G, Van Langenhove H, Verstraete W.	Appl Environ Microbiol	10.1128/aem.69.9.5643-5647.2003	2003
Enzymology	Development of a rapid PCR assay specific for Staphylococcus saprophyticus and application to direct detection from urine samples.	Martineau F, Picard FJ, Menard C, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.38.9.3280-3284.2000	2000
Phylogeny	Species identities of enterococci isolated from clinical specimens.	Ruoff KL, de la Maza L, Murtagh MJ, Spargo JD, Ferraro MJ.	J Clin Microbiol	10.1128/jcm.28.3.435-437.1990	1990
Phylogeny	Development of a PCR assay for identification of staphylococci at genus and species levels.	Martineau F, Picard FJ, Ke D, Paradis S, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.39.7.2541-2547.2001	2001
Phylogeny	Ribosomal DNA-directed PCR for identification of Achromobacter (Alcaligenes) xylosoxidans recovered from sputum samples from cystic fibrosis patients.	Liu L, Coenye T, Burns JL, Whitby PW, Stull TL, LiPuma JJ.	J Clin Microbiol	10.1128/jcm.40.4.1210-1213.2002	2002
Metabolism	Characterization of leucocin B-KM432Bz from Leuconostoc pseudomesenteroides isolated from boza, and comparison of its efficiency to pediocin PA-1.	Makhloufi KM, Carre-Mlouka A, Peduzzi J, Lombard C, van Reenen CA, Dicks LM, Rebuffat S.	PLoS One	10.1371/journal.pone.0070484	2013
Phylogeny	Development of cpn60-based real-time quantitative PCR assays for the detection of 14 Campylobacter species and application to screening of canine fecal samples.	Chaban B, Musil KM, Himsworth CG, Hill JE.	Appl Environ Microbiol	10.1128/aem.00101-09	2009
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
Pathogenicity	New real-time PCR assay for rapid detection of methicillin-resistant Staphylococcus aureus directly from specimens containing a mixture of staphylococci.	Huletsky A, Giroux R, Rossbach V, Gagnon M, Vaillancourt M, Bernier M, Gagnon F, Truchon K, Bastien M, Picard FJ, van Belkum A, Ouellette M, Roy PH, Bergeron MG.	J Clin Microbiol	10.1128/jcm.42.5.1875-1884.2004	2004
	Specific surface antigens of SmT variants of Mycobacterium avium.	Thorel MF, David HL.	Infect Immun	10.1128/iai.43.1.438-439.1984	1984
Enzymology	Rapid ultrafiltration concentration and biosensor detection of enterococci from large volumes of Florida recreational water.	Leskinen SD, Lim DV.	Appl Environ Microbiol	10.1128/aem.00052-08	2008
Enzymology	Restriction fragment length polymorphism analysis of 16S ribosomal DNA of Streptococcus and Enterococcus species of bovine origin.	Jayarao BM, Dore JJ, Oliver SP.	J Clin Microbiol	10.1128/jcm.30.9.2235-2240.1992	1992
Phylogeny	Comparison of physiologic tests used to identify non-beta-hemolytic aerococci, enterococci, and streptococci.	Fertally SS, Facklam R.	J Clin Microbiol	10.1128/jcm.25.10.1845-1850.1987	1987
Enzymology	Modification of kanamycin-esculin-azide agar to improve selectivity in the enumeration of fecal streptococci from water samples.	Audicana A, Perales I, Borrego JJ.	Appl Environ Microbiol	10.1128/aem.61.12.4178-4183.1995	1995
	Development of a swine-specific fecal pollution marker based on host differences in methanogen mcrA genes.	Ufnar JA, Ufnar DF, Wang SY, Ellender RD.	Appl Environ Microbiol	10.1128/aem.00319-07	2007
Enzymology	Routine procedures for isolation and identification of enterococci and fecal streptococci.	Knudtson LM, Hartman PA.	Appl Environ Microbiol	10.1128/aem.58.9.3027-3031.1992	1992
Phylogeny	Identification of Enterococcus species isolated from human infections by a conventional test scheme.	Facklam RR, Collins MD.	J Clin Microbiol	10.1128/jcm.27.4.731-734.1989	1989
Phylogeny	Phylogenetic analysis of Ara+ and Ara- Burkholderia pseudomallei isolates and development of a multiplex PCR procedure for rapid discrimination between the two biotypes.	Dharakul T, Tassaneetrithep B, Trakulsomboon S, Songsivilai S.	J Clin Microbiol	10.1128/jcm.37.6.1906-1912.1999	1999
Enzymology	Development of polymerase chain reaction assays for detection of Listeria monocytogenes in clinical cerebrospinal fluid samples.	Jaton K, Sahli R, Bille J.	J Clin Microbiol	10.1128/jcm.30.8.1931-1936.1992	1992
	PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid.	Greisen K, Loeffelholz M, Purohit A, Leong D.	J Clin Microbiol	10.1128/jcm.32.2.335-351.1994	1994
Phylogeny	DNA relatedness, phenotypic characteristics, and antimicrobial susceptibilities of Globicatella sanguinis strains.	Shewmaker PL, Steigerwalt AG, Shealey L, Weyant R, Facklam RR.	J Clin Microbiol	10.1128/jcm.39.11.4052-4057.2001	2001
	Analysis of genes encoding D-alanine-D-alanine ligase-related enzymes in Enterococcus casseliflavus and Enterococcus flavescens.	Navarro F, Courvalin P.	Antimicrob Agents Chemother	10.1128/aac.38.8.1788	1994
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Phylogeny	Evaluation of a modified nitrous acid extraction latex agglutination kit for grouping beta-hemolytic streptococci and enterococci.	Petts DN.	J Clin Microbiol	10.1128/jcm.33.4.1016-1018.1995	1995
	Designing primers and evaluation of the efficiency of propidium monoazide - Quantitative polymerase chain reaction for counting the viable cells of Lactobacillus gasseri and Lactobacillus salivarius.	Lai CH, Wu SR, Pang JC, Ramireddy L, Chiang YC, Lin CK, Tsen HY.	J Food Drug Anal	10.1016/j.jfda.2016.10.004	2017
Phylogeny	Identification of clinically relevant viridans streptococci by an oligonucleotide array.	Chen CC, Teng LJ, Kaiung S, Chang TC.	J Clin Microbiol	10.1128/jcm.43.4.1515-1521.2005	2005
	Unveiling the uncommon: A rare case report of osteomyelitis caused by Enterococcusavium.	Sreenivasan P, Raj R, Kumaravel J, Kumar D, Angrup A.	Indian J Med Microbiol	10.1016/j.ijmmb.2025.100818	2025
	Phenotypic and genomic analysis of Enterococcus avium MC09 pathogenicity isolated from Scylla spp. (mud crab) in a Thai market.	Suwannasin S, Singkhamanan K, Pomwised R, Chaichana N, Wonglapsuwan M, Yaikhan T, Surachat K.	Microb Pathog	10.1016/j.micpath.2025.107415	2025
	Enterococcus avium Infection After Liver Transplantation in Vietnam: A Case Report.	Trung ND, Tam NC, Chinh DT, Nam H, Trung ND, Thao LTP, Marche PN, Su HX.	Transplant Proc	10.1016/j.transproceed.2024.11.020	2025
	Enterococcus avium from a traditional Chinese liquor fermentation system with the potential for the de novo synthesis of GABA	Li T, Luo B, Zou X, Yin J, Lv S, Wang J, Gong L.	Lebensm Wiss Technol		2024
	Application of spray-dried bacteriocins as cheese biopreservatives.	Lenz RM, Guitian MV, Villalva FJ, Goncalvez de Oliveira E, Soria MC, Audisio MC, Ibarguren C.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2025.111062	2025
	Unravelling the processes involved in biodegradation of chlorinated organic pollutant: From microbial community to isolated organohalide degraders.	Liu M, Su X, Yuan J, Yang X, Chen Y, Xu Q, Huang X, Xu J, He Y.	Water Res	10.1016/j.watres.2024.122730	2025
Genetics	Draft genome sequencing of Enterococcus avium strains isolated from bovine mastitis.	Rahaman M, Sultana T, Rahman MM, Siddique N, Faisal GM, Hasan MM, Das ZC, Aminoor Rahman ANM, Islam T, Hoque MN.	Microbiol Resour Announc	10.1128/mra.00236-24	2024
	Recurrent Diverticulitis Complicated by Actinomyces turicensis Abscess.	Patel A, Bhushan S.	ACG Case Rep J	10.14309/crj.0000000000001658	2025
	Identification and treatment of Enterococcus avium-induced diabetic foot ulcer: a case report and microbiome analysis.	Jin Y, Zhu T, Cai X, Fu Z, Pan Q, Tu H, Wang S, Li Y.	Front Med (Lausanne)	10.3389/fmed.2024.1502337	2024
	Atypical Cutaneous Manifestation of Mycosis Fungoides: A Case Report.	Hagan V, Myers E, Caussat T, Sobhan A, Barrueto L, Awan A.	Cureus	10.7759/cureus.65034	2024
	Distribution and drug resistance analysis of pathogens in early-stage digestive tract perforation complicated with peritonitis.	Wang S, Yao S.	Sci Rep	10.1038/s41598-025-02543-5	2025
	Identification of plasmids co-carrying cfr(D)/optrA and cfr(D2)/poxtA linezolid resistance genes in two Enterococcus avium isolates from swine brain.	Coccitto SN, Cinthi M, Simoni S, Vignaroli C, Massacci FR, Albini E, Garofalo C, Aquilanti L, Magistrali CF, Brenciani A, Giovanetti E.	Vet Microbiol	10.1016/j.vetmic.2023.109749	2023
	Residual Sterile Muscle Fibrosis Following Partial Debridement of a Pressure Ulcer.	Tilkin J, Velleman J, Segers K, Van Brussel M.	Cureus	10.7759/cureus.91989	2025
	Metagenomic sequencing revealed the regulative effect of Danshen and Honghua herb pair on the gut microbiota in rats with myocardial ischemia injury.	Du SB, Zhou HH, Xue ZP, Gao S, Li J, Meng Y, Zhao YJ, Wang PF, Li N, Bai JX, Bai JQ, Wang XP.	FEMS Microbiol Lett	10.1093/femsle/fnad133	2024
	Implementation of convolutional neural networks for microbial colony recognition.	Kong F, Su M, Guo J, Wu H, Chen H, Qiu J, Huang J.	Microbiol Spectr	10.1128/spectrum.02885-24	2025
	Investigation of Bacterial Species and Their Antimicrobial Drug Resistance Profile in Feline Urinary Tract Infection in Thailand	Lapcharoen K, Bumrungpun C, Chumpol W, Lunha K, Yongkiettrakul S, Lekcharoensuk P, Pruksakorn C.	Animals (Basel)		2025
	Antimicrobial Activity, Genetic Diversity and Safety Assessment of Lactic Acid Bacteria Isolated from European Hakes (Merluccius merluccius, L.) Caught in the Northeast Atlantic Ocean.	Diaz-Formoso L, Contente D, Feito J, Orgaz B, Hernandez PE, Borrero J, Munoz-Atienza E, Cintas LM.	Antibiotics (Basel)	10.3390/antibiotics14050469	2025
	Pylephlebitis: A Rare but Redoubtable Complication of Intra-Abdominal Infections-A Series of 15 Cases.	Benea SN, Deaconu T, Florea D, Moroti R, Oprica G, Nae A, Patrascu RE, Militaru E, Gedik H, Savulescu-Fiedler I.	Life (Basel)	10.3390/life15101525	2025
Genetics	Clinical performance of real-time nanopore metagenomic sequencing for rapid identification of bacterial pathogens in cerebrospinal fluid: a pilot study.	Sung YH, Ju YK, Lee HJ, Park SM, Suh JW, Kim JY, Sohn JW, Yoon YK.	Sci Rep	10.1038/s41598-025-87858-z	2025
	The prevalence of optrA-carrying Enterococci in the vaginal micro-ecology of pregnant women in late pregnancy.	Xie Y, Xu F, Dong H, Mao J, Zhang C.	Microbiol Spectr	10.1128/spectrum.02135-24	2025
	A newly isolated human intestinal strain deglycosylating flavonoid C-glycosides.	Wang S, Liu S, Wang J, Tao J, Wu M, Ma W, Wang R.	Arch Microbiol	10.1007/s00203-022-02881-2	2022
	Limited Diagnostic Value of Blood Cultures in Patients with Soft Tissue Infections Transferred to a Quaternary Care Center.	Ghneim MH, Schrank GM, Teeter W, Andersen B, Brown A, Tran QK.	Bioengineering (Basel)	10.3390/bioengineering12060609	2025
Phylogeny	Comparing lactic acid bacteria biodiversity in irritable bowel syndrome and healthy gut microbiota.	Azimi A, Yavarmanesh M, Gholamin M.	Food Sci Nutr	10.1002/fsn3.4477	2024
	Automated molecular detection of the vancomycin resistance genes vanA and vanB using the geneLEAD VIII platform.	Mori K, Matsumura Y, Tsuda Y, Shinohara K, Tsuchido Y, Yamamoto M, Nagao M.	Access Microbiol	10.1099/acmi.0.001044.v4	2025
Enzymology	The Influence of L-Lysine-Alpha-Oxidase on the Biofilm Formation of Opportunistic Microorganisms Associated with Inflammatory Diseases of the Urinary Tract.	Senyagin A, Sachivkina N, Das M, Arsenyuk A, Mannapova R, Mannapov A, Kubatbekov T, Svistunov D, Petrukhina O, Zharov A, Zhabo N.	Pathogens	10.3390/pathogens13030252	2024
	Appendiceal low-grade pseudomyxoma peritonei recurrence with splenic invasion and parastomal hernia.	Liu Q, Jiao J, Yu G, Guo P, Li C.	Front Surg	10.3389/fsurg.2024.1484812	2024
	Enterococcus isolated from poultry intestine for potential probiotic use.	Carvajal E, Contreras S, Diaz W, Martinez-Bello D, McCown M, Ardila Y, Vasquez MC.	Vet World	10.14202/vetworld.2023.1605-1614	2023
	Potential probiotic and safety characterisation of enterococcus bacteria isolated from indigenous fermented motal cheese	Kouhi F, Mirzaei H, Nami Y, Khandaghi J, Javadi A.	Int Dairy J		2022
Metabolism	In Vitro Production of Optically Active Octahydrocurcumin by Human Intestinal Bacterium.	Niwa T, Yokoyama SI, Mochizuki M, Osawa T.	Biol Pharm Bull	10.1248/bpb.b21-00992	2022
	Enterococci-related healthcare-associated ventriculitis and meningitis: a multicenter retrospective case series from clinical practice.	Qiu Y, Ye Y, Yang Q, Zhao J, Gong X, Ma Y, Shi G, Li G, Wu G.	BMC Neurol	10.1186/s12883-025-04393-0	2025
	Bacteraemia caused by non-faecalis and non-faecium Enterococcus species-a retrospective study of incidence, focus of infection, and prognosis.	Lohikoski R, Oldberg K, Rasmussen M.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-023-04690-x	2024
	Bibliometric Analysis of Nontuberculous Mycobacteria Research in South Korea.	Lee G, Kang YA, Park Y.	Tuberc Respir Dis (Seoul)	10.4046/trd.2024.0158	2025
	Detection of Enterococcus avium in a case of urinary tract infection and haematuria.	Abo-Zed A, Hegazy S, Phan T.	Access Microbiol	10.1099/acmi.0.000349	2022
Pathogenicity	A Case of a Female Patient Presenting With Idiopathic Granulomatous Mastitis With Superimposed Enterococcus Avium Infection.	Albogami M, Alsaedy A, Matrood RA, Alotaibi Y, Al Ahmadi B.	Cureus	10.7759/cureus.29997	2022
	High throughput construction of species characterized bacterial biobank for functional bacteria screening: demonstration with GABA-producing bacteria.	Qiu Y, Fan D, Wang J, Zhou X, Teng X, Rao C.	Front Microbiol	10.3389/fmicb.2025.1545877	2025
Phylogeny	Detection of methanogens in peri-appendicular abscesses: Report of four cases.	Djemai K, Gouriet F, Sielezneff I, Mege D, Drancourt M, Grine G.	Anaerobe	10.1016/j.anaerobe.2021.102470	2021
	Comparison of the efficacy of carbapenems and cephalosporins for postoperative treatment of perforated appendicitis in children.	Hang T, Chen QL, Li YH, Wang SW, Jiang XH, Zhu WC.	World J Gastrointest Surg	10.4240/wjgs.v17.i4.104712	2025
	Polymicrobial Osteomyelitis in a Patient With Isolation of Trueperella bernardiae: A Case Report and Literature Review.	Delaye-Martinez MA, Vanegas-Rodriguez ES, Mendez-Sotelo B, Garcia-Hernandez ML, Colin-Castro CA, Franco-Cendejas R, Lopez-Jacome LE.	Case Rep Infect Dis	10.1155/crdi/6010539	2025
	Therapeutic strategy and efficacy evaluation of chronic empyema after total pneumonectomy: individualized analysis of six patients.	Wang L, Lv Y, Zhao G, Li G, He Z, Huang Y, Zhao G.	J Cardiothorac Surg	10.1186/s13019-024-03246-0	2024
	Metagenomic Next-Generation Sequencing Direct Diagnosis of Mixed Bacterial Meningitis in a Child: A Case Report.	Wang W, Wang Y, Xin X, Yin Y, Zhao C, Jin Y.	Infect Drug Resist	10.2147/idr.s476781	2024
Phylogeny	Peritonitis with bacteremia due to Christensenella hongkongensis identified via ribosomal RNA sequencing in a Japanese patient with advanced colorectal adenocarcinoma: A case report.	Itoh N, Akazawa N, Ishibana Y, Murakami H.	IDCases	10.1016/j.idcr.2023.e01797	2023
	Hypervirulent Klebsiella pneumoniae Mediated Hepatic Infarction Septic Shock After Rectal Cancer Surgery: A Case Report.	Li Y, Yang Y, Zheng Y, Gao Y, Shu G, Gai W, Guo Y, Deng X.	Infect Drug Resist	10.2147/idr.s452705	2024
Genetics	A Study on Glycopeptide-Resistant Genotypes among Clinical Isolates of Enterococcus with Van B Phenotype.	Rajan R.	Adv Biomed Res	10.4103/abr.abr_133_21	2023
	The Appropriateness of Empirical Uses of Antibiotics Based on Antimicrobial Susceptibility Results for Inpatients at a Tertiary Hospital in Saudi Arabia.	Almogbel Y, Mobark MA, Almutairi MS, Almogbel FS, Rabbani SI, Alhathloul S, Alamro S, Alatallah L.	Antibiotics (Basel)	10.3390/antibiotics13090824	2024
	Association Between Spontaneous Preterm Labor and Genitourinary Tract Infections Among Pregnant Women in a Tertiary Care Hospital in South India: A Cross-Sectional Study.	Sirisha P, Prashanth S, Arun P, Barathi A.	Cureus	10.7759/cureus.71973	2024
	Characteristics of Enterococcus species bloodstream infections among adults with and without onco-hematological malignancies: Experiences from the national center of Hungary.	Marosi B, Kadar B, Bruzsa A, Kocsis L, Kamotsay K, Sinko J, Szabo BG, Lakatos B.	Eur J Microbiol Immunol (Bp)	10.1556/1886.2024.00011	2024
Genetics	Metagenome-based identification of functional traits of the black soldier fly gut microbiome associated with larval performance.	IJdema F, Arias-Giraldo LM, Vervoort E, Struyf T, Van den Ende W, Raaijmakers JM, Lievens B, De Smet J.	BMC Microbiol	10.1186/s12866-025-04327-3	2025
Genetics	Genomic and clinical characterization of linezolid resistance in Enterococcus species from cancer patients in China.	Wang Q, Zhang X, Wu W, Xie Z, Lin Y, Zhang L.	BMC Infect Dis	10.1186/s12879-025-11371-x	2025
	Dissemination of bla _NDM-5 Driven by Horizontal Transfer of IncFIA Plasmid Between Escherichia coli and Klebsiella pneumoniae Co-Isolated from a Patient's Ascitic Fluid.	Yu J, Ding Y, Zhang X, Tai S, Zhang C, Liu C, Yuan E, Duan Y.	Infect Drug Resist	10.2147/idr.s478304	2024
	Gas, Larvae, Coagulopathy, and a Rare Culprit: Emphysematous Cystitis and Enterococcus raffinosus Ventriculitis Triggered by Strongyloides Hyperinfection Syndrome.	Bowyer JF, Prentice D.	Cureus	10.7759/cureus.82417	2025
	The Predictive Value of Quantitative Analysis of SPECT V/Q Imaging for Postoperative Persistent/Recurrent Pulmonary Hypertension in Patients With Chronic Thromboembolic Pulmonary Hypertension After Pulmonary Endarterectomy.	Han P, Ma R, Xie W, Li H, Zhang Z, Zhai Z, Fu L.	Pulm Circ	10.1002/pul2.70195	2025
	Rapid identification of bacteria using a multiplex polymerase chain reaction system for acute abdominal infections.	Kakizaki N, Asai K, Kuroda M, Watanabe R, Kujiraoka M, Sekizuka T, Katagiri M, Moriyama H, Watanabe M, Saida Y.	Front Microbiol	10.3389/fmicb.2023.1220651	2023
	Ruminococcus gnavus bacteraemia showing morphological diversity on Gram staining: a case report and literature review.	Hioki T, Kataoka K, Mutoh Y.	Access Microbiol	10.1099/acmi.0.000442	2023
	Vancomycin and Linezolid-Resistant Enterococcus Isolates from a Tertiary Care Center in India.	Sengupta M, Sarkar R, Sarkar S, Sengupta M, Ghosh S, Banerjee P.	Diagnostics (Basel)	10.3390/diagnostics13050945	2023
	Trueperella bernardiae bloodstream infection following onco-gynaecologic surgery and literature review.	Casale R, Bianco G, Cosma S, Micheletti L, Comini S, Iannaccone M, Boattini M, Cavallo R, Benedetto C, Costa C.	Infez Med	10.53854/liim-3001-15	2022
	Cecum perforation by plug migration: an unexpected late complication of inguinal hernia mesh repair.	Policarpo F, Rafael AA, Borges MF, Azevedo F.	J Surg Case Rep	10.1093/jscr/rjad137	2023
	Probiotic Potential and Wide-spectrum Antimicrobial Activity of Lactic Acid Bacteria Isolated from Infant Feces.	Wang X, Wang W, Lv H, Zhang H, Liu Y, Zhang M, Wang Y, Tan Z.	Probiotics Antimicrob Proteins	10.1007/s12602-020-09658-3	2021
	Distribution and association of antimicrobial resistance and virulence characteristics in Enterococcus spp. isolates from captive Asian elephants in China.	Yang J, Chen Y, Dong Z, Zhang W, Liu L, Meng W, Li Q, Fu K, Zhou Z, Liu H, Zhong Z, Xiao X, Zhu J, Peng G.	Front Microbiol	10.3389/fmicb.2023.1277221	2023
	Peritoneal dialysis-associated peritonitis caused by Enterococcus avium.	Calca R, Gomes da Silva F, Martins AR, Branco PQ.	BMJ Case Rep	10.1136/bcr-2020-240272	2021
	Biotechnological Method of Preparation and Characterization of Recombinant Antimicrobial Peptide Avicin A from Enterococcus avium.	Balandin SV, Finkina EI, Nurmukhamedova EK, Tagaev AA, Umnyakova ES, Kokryakov VN, Shvets VI, Ovchinnikova TV.	Dokl Biochem Biophys	10.1134/s1607672919010113	2019
	A Case of Abdominal Perforation in a COVID+ Patient Treated With Tocilizumab and Corticosteroids.	Chaudhry B, Alekseyev K, Didenko L, Chaudhry M.	Clin Med Insights Case Rep	10.1177/11795476231173870	2023
Pathogenicity	Lactobacillus rhamnosus modulates murine neonatal gut microbiota and inflammation caused by pathogenic Escherichia coli.	Xuan H, Umar S, Zhong C, Yu W, Ahmed I, Wheatley JL, Sampath V, Chavez-Bueno S.	BMC Microbiol	10.1186/s12866-024-03598-6	2024
	Occurrence of Antimicrobial-Resistant Enterococcus spp. in Healthy Chickens Never Exposed to Antimicrobial Agents in Central Italy.	Cagnoli G, Di Paolo A, Bertelloni F, Salvucci S, Buccioni A, Marzoni Fecia di Cossato M, Ebani VV.	Antibiotics (Basel)	10.3390/antibiotics13050417	2024
	The Majority of Bacillus subtilis Strains Isolated From Blood Cultures Were Derived From Traditional Japanese Fermented Soybeans Natto: A Single-center Retrospective Study.	Sada RM, Yamamoto G, Hamaguchi S, Kuroda E, Okura A, Cai M, Nakanishi K, Abe N, Yamamoto S, Kutsuna S.	Open Forum Infect Dis	10.1093/ofid/ofaf574	2025
	Gut microbiome signatures predict 5-ASA efficacy in ulcerative colitis.	Dang Y, Xu X, Ma J, Zhou M, Xu C, Huang X, Xu F, Wang Z, Shi H, Zhang S.	iScience	10.1016/j.isci.2025.112568	2025
	Antibiogram profile of Enterococcus faecalis and Enterococcus faecium in chicken meat from supermarkets in Sleman District, Indonesia.	Nurrahmat AMI, Susetya H, Putri K.	Vet World	10.14202/vetworld.2025.491-499	2025
Genetics	Metagenomic analysis demonstrates distinct changes in the gut microbiome of Kawasaki diseases children.	Han L, Liu X, Lan Y, Hua Y, Fan Z, Li Y.	Front Immunol	10.3389/fimmu.2024.1416185	2024
Metabolism	Gamma-Aminobutyric Acid Production from a Novel Enterococcus avium JS-N6B4 Strain Isolated from Edible Insects.	Jo MH, Hong SJ, Lee HN, Ju JH, Park BR, Lee JH, Kim SA, Eun JB, Wee YJ, Kim YM.	J Microbiol Biotechnol	10.4014/jmb.1905.05001	2019
	Multiomics approach reveals the comprehensive interactions between nutrition and children's gut microbiota, and microbial and host metabolomes.	Zhu M, Wang Q, Yang Y, Liu X, Zhang J, Li G, Liu W, Xiang X, Chen J.	Nutr J	10.1186/s12937-025-01116-6	2025
	Epidemiology, clinical characteristics, and outcome of enterococcal bloodstream infections in critically ill patients in China: a single-center retrospective 10-year analysis.	Jin Y, Yi Z, Hu Y, Huang M.	Microbiol Spectr	10.1128/spectrum.01067-25	2025
	Enterococcus raffinosus, Enterococcus durans and Enterococcus avium Isolated from a Tertiary Care Hospital in Romania-Retrospective Study and Brief Review.	Toc DA, Pandrea SL, Botan A, Mihaila RM, Costache CA, Colosi IA, Junie LM.	Biology (Basel)	10.3390/biology11040598	2022
Metabolism	In vitro fermentation of raffinose by the human gut bacteria.	Mao B, Tang H, Gu J, Li D, Cui S, Zhao J, Zhang H, Chen W.	Food Funct	10.1039/c8fo01687a	2018
	Development and evaluation of a real-time multienzyme isothermal rapid amplification assay for rapid detection of Streptococcus pneumoniae.	Xing Y, Duan Z, Jiang Y, Li M, Lu W, Li J.	Sci Rep	10.1038/s41598-024-68524-2	2024
	Optimal First-Line Antibiotic Treatment for Pediatric Complicated Appendicitis Based on Peritoneal Fluid Culture.	Aiyoshi T, Masumoto K, Tanaka N, Sasaki T, Chiba F, Ono K, Jimbo T, Urita Y, Shinkai T, Takayasu H, Hitomi S.	Pediatr Gastroenterol Hepatol Nutr	10.5223/pghn.2021.24.6.510	2021
	Treatment of Extra-Intestinal Clostridioides difficile Abscess following Acute Appendicitis.	Chatterjee T, Roy M, Ahmad S.	Eur J Case Rep Intern Med	10.12890/2022_003489	2022
	Peritonitis from Anaerobic Gram-positive Cocci Likely Due to Translocation of Bacteria from Gut in a Patient Undergoing Peritoneal Dialysis.	Adapa S, Naramala S, Boken D, Moreno A, Konala VM.	Cureus	10.7759/cureus.6060	2019
	Co-existence of the oxazolidinone resistance genes cfr and optrA on two transferable multi-resistance plasmids in one Enterococcus faecalis isolate from swine.	Chen L, Han D, Tang Z, Hao J, Xiong W, Zeng Z.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2020.105993	2020
	Anti-Listeria monocytogenes effect of bacteriocin-incorporated agar edible coatings applied on cheese	Guitian MV, Ibarguren C, Soria MC, Hovanyecz P, Banchio C, Audisio MC.	Int Dairy J	10.1016/j.idairyj.2019.05.016	2019
	Analysis of Pathogenic Bacteria Distribution and Related Factors in Recurrent Acute Cholangitis.	Li K, Hu X, Lu Q, Zhang H, Zhou J, Tian S, Zhou F.	Infect Drug Resist	10.2147/idr.s418752	2023
	Florfenicol administration in piglets co-selects for multiple antimicrobial resistance genes.	Holman DB, Gzyl KE, Kommadath A.	mSystems	10.1128/msystems.01250-24	2024
Enzymology	Enhanced sulfate and metal removal by reduced graphene oxide self-assembled Enterococcus avium sulfate-reducing bacteria particles.	Yan J, Ye W, Jian Z, Xie J, Zhong K, Wang S, Hu H, Chen Z, Wen H, Zhang H.	Bioresour Technol	10.1016/j.biortech.2018.07.012	2018
Genetics	Diet-induced changes in the jejunal microbiota of developing broilers reduce the abundance of Enterococcus hirae and Enterococcus faecium.	Stege PB, Schokker D, Harders F, Kar SK, Stockhofe N, Perricone V, Rebel JMJ, de Jong IC, Bossers A.	BMC Genomics	10.1186/s12864-024-10496-8	2024
	The gut microbiota of wild birds undergoing rehabilitation as a reservoir of multidrug-resistant enterococci in a metropolitan area in Brazil.	Freitas AAR, Faria AR, Mendes LT, Merquior VLC, Neves DM, Pires JR, Teixeira LM.	Braz J Microbiol	10.1007/s42770-024-01527-3	2024
	Multiorgan failure following gastroenteritis: a case report.	De Zylva J, Padley J, Badbess R, Dedigama M.	J Med Case Rep	10.1186/s13256-020-02402-z	2020
	Electrochemical Characterization of Two Gut Microbial Strains Cooperatively Promoting Multiple Sclerosis Pathogenesis.	Naradasu D, Miran W, Okamoto A.	Microorganisms	10.3390/microorganisms12020257	2024
	Dormant Pseudomonas aeruginosa infection seven years post-augmentation mastopexy: A case report.	Daghistani M, Hanawi M, Alturki N.	Int J Surg Case Rep	10.1016/j.ijscr.2021.106614	2021
Genetics	Last Bacteria Standing: VREfm Persistence in the Hospitalized Gut.	Stellfox ME, Van Tyne D.	mBio	10.1128/mbio.00670-22	2022
	Ethnomedicinal uses, phytochemistry, and pharmacology of the genus Sarcophyte: a review.	Jared Misonge O, Gervason Apiri M, James Onsinyo M, Samuel Murigi W, Geoffrey Ogeto S, Vincent Obaga N.	Front Pharmacol	10.3389/fphar.2023.1301672	2023
Enzymology	Characterization of a Glutamate Decarboxylase (GAD) from Enterococcus avium M5 Isolated from Jeotgal, a Korean Fermented Seafood.	Lee KW, Shim JM, Yao Z, Kim JA, Kim HJ, Kim JH.	J Microbiol Biotechnol	10.4014/jmb.1701.01058	2017
	GC Analysis, Anticancer, and Antibacterial Activities of Secondary Bioactive Compounds from Endosymbiotic Bacteria of Pomegranate Aphid and Its Predator and Protector.	Alsufyani T, Al-Otaibi N, Alotaibi NJ, M'sakni NH, Alghamdi EM.	Molecules	10.3390/molecules28104255	2023
	Most postoperative reserved "normal" metatarsal stumps of diabetic foot osteomyelitis are infected but have healing potential.	Xu J, Chen W, He L, Feng S, Zhang J, Chang B.	Front Endocrinol (Lausanne)	10.3389/fendo.2023.1165305	2023
	It Is Always Early with Point-of-Care Ultrasound.	Bitar ZI, Zaalouk TM, Maadarani OS, Elshabasy RD.	Case Rep Crit Care	10.1155/2020/9431496	2020
	Critical peritonitis secondary to gastrointestinal mucormycosis in a peritoneal dialysis patient: a case report.	Hattori S, Matono T, Hirakawa M, Nakamata Y, Okamura K, Hamashoji T, Kometani T, Nakashima T, Sasaki S, Minagawa R, Kajiyama K.	CEN Case Rep	10.1007/s13730-021-00628-4	2022
Genetics	Gut microbiota associated with cryptococcal meningitis and dysbiosis caused by anti-fungal treatment.	Li H, Zhang L, Zhang K, Huang Y, Liu Y, Lu X, Liao W, Liu X, Zhang Q, Pan W.	Front Microbiol	10.3389/fmicb.2022.1086239	2022
Enzymology	Analysis of Human Gut Microbiota Enzymes for Biotechnological and Food Industrial Applications.	Torres-Sanchez A, Luque G, Ortiz P, Ruiz-Rodriguez A, Lopez-Moreno A, Aguilera M.	Foods	10.3390/foods14101794	2025
Enzymology	Early alert from the microbiology laboratory improves the outcome of elderly patients with Enterococcus spp. bloodstream infection: Results from a multicentre prospective study.	Falcone M, Tiseo G, Dentali F, Foglia E, Campanini M, Menichetti F, Mazzone A, FADOI (Federazione delle Associazioni dei Dirigenti Ospedalieri Internisti) and GISA (Italian Group for Antimicrobial Stewardship).	J Glob Antimicrob Resist	10.1016/j.jgar.2019.02.014	2019
Phylogeny	Evaluation of full-length nanopore 16S sequencing for detection of pathogens in microbial keratitis.	Low L, Fuentes-Utrilla P, Hodson J, O'Neil JD, Rossiter AE, Begum G, Suleiman K, Murray PI, Wallace GR, Loman NJ, Rauz S, West Midlands Collaborative Ophthalmology Network for Clinical Effectiveness & Research by Trainees (WM CONCERT).	PeerJ	10.7717/peerj.10778	2021
	Bloodstream Infections in Patients with Hematologic Diseases: Causative Organisms and Factors Associated with Resistance.	Choi H, Ahn H, Lee R, Cho SY, Lee DG.	Infect Chemother	10.3947/ic.2022.0069	2022
	A Case of Necrotizing Fasciitis Mimicking a Burn in an Elderly Patient.	Khan M, Bhatia S, Cervellione KL, Louis MA.	Case Rep Surg	10.1155/2023/3786364	2023
	Polymicrobial methicillin-resistant Staphylococcus aureus bloodstream infections.	Escalona A, Hayashi E, Evans M, van Bakel H, Alburquerque B, Dupper AC, McBride R, Altman DR.	Microbiol Spectr	10.1128/spectrum.01081-24	2024
	Pathogenic Microbial Profile and Antibiotic Resistance Associated with Periodontitis.	Ansiliero R, Gelinski JMLN, Samistraro QL, Baratto CM, Almeida CA, Locatelli C.	Indian J Microbiol	10.1007/s12088-020-00914-2	2021
	Cardiac Magnetic Resonance Imaging for the Diagnosis of Infective Endocarditis in the COVID-19 Era.	Bhuta S, Patel NJ, Ciricillo JA, Haddad MN, Khokher W, Mhanna M, Patel M, Burmeister C, Malas H, Kammeyer JA.	Curr Probl Cardiol	10.1016/j.cpcardiol.2022.101396	2023
	Molecular Analysis of Glutamate Decarboxylases in Enterococcus avium.	Gu X, Zhao J, Zhang R, Yu R, Guo T, Kong J.	Front Microbiol	10.3389/fmicb.2021.691968	2021
	Massive Haematochezia due to Splenic Artery Bleeding into the Colon: Unusual Manifestation of Advanced Pancreatic Cancer.	Sguinzi R, Pugin F, Bader C, Meyer A, Buhler L, Widmer L, Staudenmann D, Egger B.	Case Rep Surg	10.1155/2023/7443508	2023
	Fourier's gangrene associated with a decubitus ulcer.	Yuan L, Xiong Q, Wang B.	IDCases	10.1016/j.idcr.2018.05.010	2018
	Clinical Characteristics and Drug Resistance Mechanisms of Linezolid-Non-Susceptible Enterococcus in a Tertiary Hospital in Northwest China.	Wu M, Kang J, Tao J, Yang Y, Li G, Jia W.	Infect Drug Resist	10.2147/idr.s442105	2024
	Prevalence of Multidrug-Resistant Bacteria in Healthcare-Associated Bloodstream Infections at Hospitals in Riyadh, Saudi Arabia.	Banawas SS, Alobaidi AS, Dawoud TM, AlDehaimi A, Alsubaie FM, Abdel-Hadi A, Manikandan P.	Pathogens	10.3390/pathogens12091075	2023
	Case Report: Monitoring Vancomycin Concentrations and Pharmacokinetic Parameters in Continuous Veno-Venous Hemofiltration Patients to Guide Individualized Dosage Regimens: A Case Analysis.	Chen J, Huang X, Lin Z, Li C, Ding H, Du J, Li L.	Front Pharmacol	10.3389/fphar.2021.763575	2021
Enzymology	High rates of colonisation by ampicillin-resistant enterococci in residents of long-term care facilities in Porto, Portugal.	Freitas AR, Novais C, Duarte B, Pereira AP, Coque TM, Peixe L.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2017.11.007	2018
	Methodological establishment and diagnostic value of a multiplex fluorescent PCR assay for the detection of three fastidious respiratory pathogens.	Shi J, Zhu Y, Chen S, Shan X, Bo L, Shen K, Chen K.	PLoS One	10.1371/journal.pone.0328651	2025
	Risk Factors for 30-Day Mortality in Nosocomial Enterococcal Bloodstream Infections.	Zerbato V, Pol R, Sanson G, Suru DA, Pin E, Tabolli V, Monticelli J, Busetti M, Toc DA, Croce LS, Luzzati R, Di Bella S.	Antibiotics (Basel)	10.3390/antibiotics13070601	2024
	Tuberculosis and COVID-19: An epidemic submerged in the pandemic: A case series and review of current literature.	Rath S, Mishra B, Mohapatra PR, Datta A, Durgeshwar G, Vedala M, Panigrahi MK, Bhuniya S.	J Family Med Prim Care	10.4103/jfmpc.jfmpc_258_22	2022
	Transmission of oral microbiota to the biliary tract during endoscopic retrograde cholangiography.	Effenberger M, Al-Zoairy R, Gstir R, Graziadei I, Schwaighofer H, Tilg H, Zoller H.	BMC Gastroenterol	10.1186/s12876-023-02721-7	2023
	Clinical Characteristics of Enterococcus-Associated Peritonitis in Patients with Peritoneal Dialysis.	Ni J, Zhou L, Wang H, Yu J, Tong M, Yu D.	Infect Drug Resist	10.2147/idr.s406437	2023
	The essential role of gut microbiota in dsRNA-mediated pest control of the phytophagous ladybird beetle, Henosepilachna vigintioctopunctata.	Huang Y, Huang J, Kim DS, Zhang J.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00767-x	2025
Enzymology	Emphysematous pyometra secondary to Enterococcus avium infection in a dog.	Chang AC, Cheng CC, Wang HC, Lee WM, Shyu CL, Lin CC, Chen KS.	Tierarztl Prax Ausg K Kleintiere Heimtiere	10.15654/tpk-150214	2016
	Antimicrobial Susceptibility Profiles of Commensal Enterococcus spp. Isolates from Chickens in Hungarian Poultry Farms Between 2022 and 2023.	Kerek A, Szabo A, Jerzsele A.	Antibiotics (Basel)	10.3390/antibiotics13121194	2024
	Intraoperative bacterial cultures fail to reliably predict the bacterial spectrum encountered during infectious complications after appendicitis.	Strohaker JKH, Bruschke MJ, Bachmann R, Mihaljevic AL, Ladurner R, Beltzer CR.	Updates Surg	10.1007/s13304-023-01698-y	2024
	Aerobic Vaginal Microflora in Gestational and Non-Gestational Bitches (Canis lupus familiaris).	Pop RA, Vasiu I, Meroni G, Martino PA, Dabrowski R, Tvarijonaviciute A, Fit IN.	Animals (Basel)	10.3390/ani14101501	2024
Genetics	In Vivo-Acquired Resistance to Daptomycin during Methicillin-Resistant Staphylococcus aureus Bacteremia.	Boutet-Dubois A, Magnan C, Lienard A, Pouget C, Bouchet F, Marchandin H, Larcher R, Lavigne JP, Pantel A.	Antibiotics (Basel)	10.3390/antibiotics12121647	2023
Phylogeny	Pathogenic bacteria enriched in the oral microbiota might be associated with recurrent pulmonary infections in elderly individuals	Xu J, Qu R, Yang K, Wang Y, Nie M, Qi X, Zheng H, Yang L.	Aging Clin Exp Res		2025
Metabolism	Isolation and characterization of human intestinal Enterococcus avium EFEL009 converting rutin to quercetin.	Shin NR, Moon JS, Shin SY, Li L, Lee YB, Kim TJ, Han NS.	Lett Appl Microbiol	10.1111/lam.12512	2016
	Clinical Impact of the BIOFIRE Blood Culture Identification 2 Panel in Adult Patients with Bloodstream Infection: A Multicentre Observational Study in the United Arab Emirates.	Senok A, Dabal LA, Alfaresi M, Habous M, Celiloglu H, Bashiri S, Almaazmi N, Ahmed H, Mohmed AA, Bahaaldin O, Elimam MAE, Rizvi IH, Olowoyeye V, Powell M, Salama B.	Diagnostics (Basel)	10.3390/diagnostics13142433	2023
	Procalcitonin and C-reactive protein as diagnostic biomarkers in COVID-19 and Non-COVID-19 sepsis patients: a comparative study.	Shi J, Zhuo Y, Wang TQ, Lv CE, Yao LH, Zhang SY.	BMC Infect Dis	10.1186/s12879-023-08962-x	2024
	Random forest differentiation of Escherichia coli in elderly sepsis using biomarkers and infectious sites.	Li BR, Zhuo Y, Jiang YY, Zhang SY.	Sci Rep	10.1038/s41598-024-63944-6	2024
	Seasonal Diversity of Lactic Acid Bacteria in Artisanal Yoghurt and Their Antibiotic Susceptibility Pattern.	Moh LG, Etienne PT, Jules-Roger K.	Int J Food Sci	10.1155/2021/6674644	2021
	Lymphocyte and neutrophil count combined with intestinal bacteria abundance predict the severity of COVID-19.	Chen L, Yin Z, Zhou D, Li X, Yu C, Luo C, Jin Y, Zhang L, Song J, Rasche L, Einsele H, Tu L, Zhou X, Bai T, Hou X.	Microbiol Spectr	10.1128/spectrum.03027-23	2024
	A Prospective Observational Study of Children with FS-Associated Hospitalization: The Implication and Outcomes of Pathogen Detection in Cerebrospinal Fluid.	Chen F, Feng F, You D, Guo Y, Yang S, Zhao T, Sun S, Wang L.	Int J Gen Med	10.2147/ijgm.s410337	2023
	Risk Factors and Prognosis of Carbapenem-Resistant Organism Colonization and Infection in Acute Cholangitis.	Li K, Jiang S, Fu H, Hao Y, Tian S, Zhou F.	Infect Drug Resist	10.2147/idr.s398581	2022
Genetics	Investigating gut microbiota-blood and urine metabolite correlations in early sepsis-induced acute kidney injury: insights from targeted KEGG analyses.	Xu Y, Xu J, Zhu Y, Mao H, Li J, Kong X, Zhu X, Zhang J.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1375874	2024
	Nutritional and Body Composition Changes in Paediatric beta-Thalassemia Patients Undergoing Hematopoietic Stem Cell Transplantation: A Retrospective Study Using Bioelectrical Impedance Analysis.	Zhang L, Wang L, Long J, Yin Y, Patil S.	J Multidiscip Healthc	10.2147/jmdh.s463796	2024
Enzymology	Microbiology of smegma: Prospective comparative control study.	Chung JM, Park CS, Lee SD.	Investig Clin Urol	10.4111/icu.2019.60.2.127	2019
Metabolism	Multi-omic profiling reveals associations between the gut microbiome, host genome and transcriptome in patients with colorectal cancer.	Zou S, Yang C, Zhang J, Zhong D, Meng M, Zhang L, Chen H, Fang L.	J Transl Med	10.1186/s12967-024-04984-4	2024
Enzymology	Bacteremia with an iliopsoas abscess and osteomyelitis of the femoral head caused by Enterococcus avium in a patient with end-stage kidney disease.	Okada A, Hangai M, Oda T.	Intern Med	10.2169/internalmedicine.54.3576	2015
	Emergence of optrA-Mediated Linezolid Resistance in Enterococcus faecium: A Molecular Investigation in a Tertiary Hospital of Southwest China from 2014-2018.	Yi M, Zou J, Zhao J, Tang Y, Yuan Y, Yang B, Huang J, Xia P, Xia Y.	Infect Drug Resist	10.2147/idr.s339761	2022
	Molecular Typing Reveals Environmental Dispersion of Antibiotic-Resistant Enterococci under Anthropogenic Pressure.	Farkas A, Coman C, Szekeres E, Teban-Man A, Carpa R, Butiuc-Keul A.	Antibiotics (Basel)	10.3390/antibiotics11091213	2022
	Unusual ultrasound diagnosis of hair implantation osteomyelitis of the thumb.	Katsura C, Chuo CB.	BMJ Case Rep	10.1136/bcr-2022-250596	2022
	Epidemiology and antimicrobial resistance trends of pathogens causing urinary tract infections in Mwanza, Tanzania: A comparative study during and after the implementation of the National Action Plan on Antimicrobial Resistance (2017-2022).	Silago V, Oravcova K, Matthews L, Mshana SE, Claus H, Seni J.	Int J Infect Dis	10.1016/j.ijid.2024.107208	2024
	Perioperative Antibiotics in Appendicitis-Do We Need to Adjust Therapy for the Elderly? A Matched Pair Analysis.	Strohaker J, Bruschke M, Leser N, Konigsrainer A, Ladurner R, Bachmann R.	Antibiotics (Basel)	10.3390/antibiotics11111525	2022
Genetics	Inter-species diversity and functional genomic analyses of closed genome assemblies of clinically isolated, megaplasmid-containing Enterococcus raffinosus Er676 and ATCC49464.	Sharon BM, Hulyalkar NV, Zimmern PE, Palmer KL, De Nisco NJ.	Access Microbiol	10.1099/acmi.0.000508.v3	2023
Genetics	Enterococcus lactis is ecologically and genetically distinct from the major opportunistic pathogen Enterococcus faecium	Ross T, Janice J, Arredondo-Alonso S, Lohr I, Holsbo E, Corander J, Pontinen A, Kampffmeyer M, Hegstad K.	Microb Genom		2025
	Clinical Outcomes in Dogs Undergoing Cholecystectomy via a Transverse Incision: A Meta-Analysis of 121 Animals Treated between 2011 and 2021.	Chae HK, Jeong JY, Lee SY, Hwang HM, Shin KI, Park JH, Ji SY, Hong YJ.	Vet Sci	10.3390/vetsci10060395	2023
	Late Prosthetic Valve Infective Endocarditis by Enterococcus durans.	Al Shehri M, Zarak MS, Sarwari AR.	J Glob Infect Dis	10.4103/jgid.jgid_99_19	2020
	Molecular Identification and Probiotic Potential Characterization of Lactic Acid Bacteria Isolated from Human Vaginal Microbiota.	Nami Y, Haghshenas B, Yari Khosroushahi A.	Adv Pharm Bull	10.15171/apb.2018.077	2018
Enzymology	Staphylococcus schleiferi diabetic foot osteomyelitis and bacteraemia in an immunocompromised host.	Nguyen MTT, Ahern NR, Train MK.	BMJ Case Rep	10.1136/bcr-2020-238302	2020
Genetics	Genomic epidemiology reveals multiple mechanisms of linezolid resistance in clinical enterococci in China.	Wang Z, Liu D, Zhang J, Liu L, Zhang Z, Liu C, Hu S, Wu L, He Z, Sun H.	Ann Clin Microbiol Antimicrob	10.1186/s12941-024-00689-0	2024
Genetics	Strongyloidiasis in a Patient Diagnosed by Metagenomic Next-Generation Sequencing: A Case Report.	Qu J, Zong Z.	Front Med (Lausanne)	10.3389/fmed.2022.835252	2022
	Antimicrobial resistance and virulence profile of enterococci isolated from poultry and cattle sources in Nigeria.	Ngbede EO, Raji MA, Kwanashie CN, Kwaga JKP.	Trop Anim Health Prod	10.1007/s11250-016-1212-5	2017
Phylogeny	Major globally disseminated clonal complexes of antimicrobial resistant enterococci associated with infections in cancer patients in Brazil.	Santos BA, Oliveira JS, Cardoso NT, Barbosa AV, Superti SV, Teixeira LM, Neves FPG.	Infect Genet Evol	10.1016/j.meegid.2017.08.027	2017
Genetics	Molecular Genomic Analyses of Enterococcus cecorum from Sepsis Outbreaks in Broilers.	Rhoads DD, Pummill J, Alrubaye AAK.	Microorganisms	10.3390/microorganisms12020250	2024
	Antimicrobial susceptibility of bovine clinical mastitis pathogens in Japan and development of a simplified agar disk diffusion method for clinical practice.	Kawai K, Kurumisawa T, Shinozuka Y, Higuchi H, Iwano H, Hayashi T, Ozawa M, Koike R, Uchiyama M.	J Vet Med Sci	10.1292/jvms.21-0450	2023
Phylogeny	Genomic analysis of inter-hospital transmission of vancomycin-resistant Enterococcus faecium sequence type 80 isolated during an outbreak in Hiroshima, Japan.	Segawa T, Masuda K, Hisatsune J, Ishida-Kuroki K, Sugawara Y, Kuwabara M, Nishikawa H, Hiratsuka T, Aota T, Tao Y, Iwahashi Y, Ueda K, Mae K, Masumoto K, Kitagawa H, Komatsuzawa H, Ohge H, Sugai M.	Antimicrob Agents Chemother	10.1128/aac.01716-23	2024
	An Optimized Screening Approach for the Oxazolidinone Resistance Gene optrA Yielded a Higher Fecal Carriage Rate among Healthy Individuals in Hangzhou, China.	Shen W, Huang Y, Cai J.	Microbiol Spectr	10.1128/spectrum.02974-22	2022
	Patterns of Drug Resistance and Bacterial Pathogen Distribution in Patients with Urinary Tract Infections in the Jiaxing Region from 2020 to 2022.	Niu X, Hou B, Yang L, Wang W, Yu Q, Mao M, Shen W.	Infect Drug Resist	10.2147/idr.s424158	2023
	Hemoperitoneum and sepsis from transhepatic gallbladder perforation of acute cholecystitis: A case report.	Chikamori F, Yukishige S, Ueta K, Takasugi H, Mizobuchi K, Matsuoka H, Hokimoto N, Yamai H, Onishi K, Tanida N, Hamaguchi N, Iwasaki T.	Radiol Case Rep	10.1016/j.radcr.2020.08.064	2020
	Metagenomic Next-Generation Sequencing in the Diagnosis of Infectious Fever During Myelosuppression Among Pediatric Patients with Hematological and Neoplastic Diseases.	Fu Y, Zhu X, Cao P, Shen C, Qian X, Miao H, Yu Y, Wang H, Zhai X.	Infect Drug Resist	10.2147/idr.s379582	2022
	Otogenic cerebellar abscess by Enterococcus avium, a very rare infectious agent.	Escribano JA, Solivera J, Vidal E, Rivin E, Lozano J.	J Neurol Surg A Cent Eur Neurosurg	10.1055/s-0032-1333418	2013
	Meropenem-induced thrombocytopenia: a paediatric case.	Cachia J, Torpiano P, Pace D.	BMJ Case Rep	10.1136/bcr-2021-243443	2021
	Antimicrobial Resistance, Biofilm Formation, and Virulence Genes in Enterococcus Species from Small Backyard Chicken Flocks.	Alzahrani OM, Fayez M, Alswat AS, Alkafafy M, Mahmoud SF, Al-Marri T, Almuslem A, Ashfaq H, Yusuf S.	Antibiotics (Basel)	10.3390/antibiotics11030380	2022
	Intracolonic cardiac pacemaker: A case of device migration with colon perforation out of a subcutaneous epifascial pocket.	Russi I, Liechti R, Memeti E, Bertschy S, Weberndoerfer V, Kobza R.	HeartRhythm Case Rep	10.1016/j.hrcr.2018.04.006	2018
	Fresh Versus Frozen Stool for Fecal Microbiota Transplantation-Assessment by Multimethod Approach Combining Culturing, Flow Cytometry, and Next-Generation Sequencing.	Bilinski J, Dziurzynski M, Grzesiowski P, Podsiadly E, Stelmaszczyk-Emmel A, Dzieciatkowski T, Lis K, Tyszka M, Ozieranski K, Dziewit L, Basak GW.	Front Microbiol	10.3389/fmicb.2022.872735	2022
	Combined treatment using Mohs' paste and neoadjuvant chemotherapy for giant gluteal soft tissue sarcoma with malignant fungating wound: a case report.	Nemoto K, Okamoto M, Kito M, Aoki K, Suzuki S, Takazawa A, Yoshimura Y, Kato H.	J Surg Case Rep	10.1093/jscr/rjz137	2019
Pathogenicity	The Impact of Enterococcus spp. in the Immunocompromised Host: A Comprehensive Review.	Sangiorgio G, Calvo M, Migliorisi G, Campanile F, Stefani S.	Pathogens	10.3390/pathogens13050409	2024
	A Comparison of Blood Pathogen Detection Among Droplet Digital PCR, Metagenomic Next-Generation Sequencing, and Blood Culture in Critically Ill Patients With Suspected Bloodstream Infections.	Hu B, Tao Y, Shao Z, Zheng Y, Zhang R, Yang X, Liu J, Li X, Sun R.	Front Microbiol	10.3389/fmicb.2021.641202	2021
	The gut microbiota composition is linked to subsequent occurrence of ventilator-associated pneumonia in critically ill patients.	Orieux A, Enaud R, Imbert S, Boyer P, Begot E, Camino A, Boyer A, Berger P, Gruson D, Delhaes L, Prevel R.	Microbiol Spectr	10.1128/spectrum.00641-23	2023
	Diagnostic Value and Clinical Application of mNGS for Post-Liver Transplantation Infection: A Cross-Sectional Study With Case Reports.	Zhao D, Guo L, Lian D, Gu Y, Yan X, Hu H, Yuan J.	Front Microbiol	10.3389/fmicb.2022.919363	2022
	Commensal antimicrobial resistance mediates microbiome resilience to antibiotic disruption.	Bhattarai SK, Du M, Zeamer AL, M Morzfeld B, Kellogg TD, Firat K, Benjamin A, Bean JM, Zimmerman M, Mardi G, Vilbrun SC, Walsh KF, Fitzgerald DW, Glickman MS, Bucci V.	Sci Transl Med	10.1126/scitranslmed.adi9711	2024
	Bacterial Species and Antibiotic Resistance-A Retrospective Analysis of Bacterial Cultures in a Pediatric Hospital.	Prajescu B, Gavriliu L, Iesanu MI, Ioan A, Boboc AA, Boboc C, Galos F.	Antibiotics (Basel)	10.3390/antibiotics12060966	2023
Phylogeny	Sarcopenia and gut microbiota alterations in patients with hematological diseases before and after hematopoietic stem cell transplantation.	Wang B, Hu W, Zhang X, Cao Y, Shao L, Xu X, Liu P.	Chin J Cancer Res	10.21147/j.issn.1000-9604.2023.04.05	2023
	Value of Blood Cultures in the Management of Children Hospitalized with Community-Acquired Pneumonia.	Youssef AS, Fanous M, Siddiqui FJ, Estrada J, Chorny V, Braiman M, Mayer EF.	Cureus	10.7759/cureus.8222	2020
	Fournier's Gangrene of the Penis following a Human Bite Wound.	Overholt T, Hajiran A, Ueno C, Zaslau S.	Case Rep Urol	10.1155/2018/9798607	2018
	Phenotypic Antimicrobial Resistance Profile of Isolates Causing Clinical Mastitis in Dairy Animals.	Ceniti C, Britti D, Santoro AML, Musarella R, Ciambrone L, Casalinuovo F, Costanzo N.	Ital J Food Saf	10.4081/ijfs.2017.6612	2017
	Kidney Transplantation From Deceased Donors With Bloodstream Infection: A Multicenter Retrospective Study.	Mo H, Lee J, Park JB, Park SC, Kim YH, Han A, Jung IM, Ha J, Kim NJ, Min S.	J Korean Med Sci	10.3346/jkms.2022.37.e4	2022
	Enterococci Isolated from One-Day-Old Chickens and Their Phenotypic Susceptibility to Antimicrobials in the Czech Republic.	Bzdil J, Sladecek V, Senk D, Stolar P, Waicova Z, Kollertova N, Zouharova M, Matiaskova K, Linhart P, Nedbalcova K.	Antibiotics (Basel)	10.3390/antibiotics12101487	2023
	Descriptive Analysis of Circulating Antimicrobial Resistance Genes in Vancomycin-Resistant Enterococcus (VRE) during the COVID-19 Pandemic.	Toc DA, Butiuc-Keul AL, Iordache D, Botan A, Mihaila RM, Costache CA, Colosi IA, Chiorean C, Neagoe DS, Gheorghiu L, Junie LM.	Biomedicines	10.3390/biomedicines10051122	2022
	Significance and survival of Enterococci during the house fly development.	Ghosh A, Akhtar M, Holderman C, Zurek L.	J Med Entomol	10.1603/me13161	2014
	Detection of Oxazolidinone Resistance Genes and Characterization of Genetic Environments in Enterococci of Swine Origin, Italy.	Fioriti S, Morroni G, Coccitto SN, Brenciani A, Antonelli A, Di Pilato V, Baccani I, Pollini S, Cucco L, Morelli A, Paniccia M, Magistrali CF, Rossolini GM, Giovanetti E.	Microorganisms	10.3390/microorganisms8122021	2020
	Chronic Stress-Related Gastroenteric Pathology in Cheetah: Relation between Intrinsic and Extrinsic Factors.	Mangiaterra S, Marker L, Cerquetella M, Galosi L, Marchegiani A, Gavazza A, Rossi G.	Biology (Basel)	10.3390/biology11040606	2022
	Brain Abscess Caused by Enterococcus avium: A Case Report and Review of the Literature.	Park SY, Park KH, Cho YH, Choi SH.	Infect Chemother	10.3947/ic.2013.45.3.335	2013
	Skin Bacteria Mediate Glycerol Fermentation to Produce Electricity and Resist UV-B.	Balasubramaniam A, Adi P, Do Thi TM, Yang JH, Labibah AS, Huang CM.	Microorganisms	10.3390/microorganisms8071092	2020
	Surgical management of mesh infection following laparoscopic sacrocolpopexy and tension-free vaginal mesh surgery: a report of two cases with a literature review.	Sato H, Teramoto S, Sato K, Abe H.	IJU Case Rep	10.1002/iju5.12039	2019
	Association Studies on Gut and Lung Microbiomes in Patients with Lung Adenocarcinoma.	Guo Y, Yuan W, Lyu N, Pan Y, Cao X, Wang Y, Han Y, Zhu B.	Microorganisms	10.3390/microorganisms11030546	2023
	The rumen microbiome inhibits methane formation through dietary choline supplementation.	Li Y, Kreuzer M, Clayssen Q, Ebert MO, Ruscheweyh HJ, Sunagawa S, Kunz C, Attwood G, Amelchanka S, Terranova M.	Sci Rep	10.1038/s41598-021-01031-w	2021
Biotechnology	Evaluation of bacterial flora during the ripening of Kedong sufu, a typical Chinese traditional bacteria-fermented soybean product.	Feng Z, Gao W, Ren D, Chen X, Li JJ.	J Sci Food Agric	10.1002/jsfa.5918	2013
	Is Natural Orifice Specimen Extraction Surgery Really Safe in Radical Surgery for Colorectal Cancer?	Liu G, Shi L, Wu Z.	Front Endocrinol (Lausanne)	10.3389/fendo.2022.837902	2022
Pathogenicity	Enterococcus avium bacteremia: a 12-year clinical experience with 53 patients.	Na S, Park HJ, Park KH, Cho OH, Chong YP, Kim SH, Lee SO, Sung H, Kim MN, Jeong JY, Kim YS, Woo JH, Choi SH.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-011-1311-1	2012
	Prevalence of bacteria and fungi in samples of cornea preservation fluid.	Broniek G, Langwinska-Wosko E, Sybilska M, Szaflik J, Szaflik JP, Wroblewska M.	Arch Med Sci	10.5114/aoms.2016.58927	2018
Enzymology	The effects of bee pollen extracts on the broiler chicken's gastrointestinal microflora.	Kacaniova M, Rovna K, Arpasova H, Hleba L, Petrova J, Hascik P, Cubon J, Pavelkova A, Chlebo R, Bobkova A, Stricik M.	Res Vet Sci	10.1016/j.rvsc.2013.02.022	2013
Enzymology	Diversity of bacterial species in the nasal cavity of sheep in the highlands of Ethiopia and first report of Histophilus somni in the country.	Tesfaye B, Sisay Tessema T, Tefera G.	Trop Anim Health Prod	10.1007/s11250-013-0355-x	2013
	The characterization of the non-starter lactic acid bacteria and yeast microbiota and the chemical and aromatic properties of traditionally produced Turkish White Cheese.	Macit E, Yucel N, Dertli E.	Braz J Microbiol	10.1007/s42770-023-01098-9	2023
Metabolism	Biological Control and Mitigation of Aflatoxin Contamination in Commodities.	Peles F, Sipos P, Kovacs S, Gyori Z, Pocsi I, Pusztahelyi T.	Toxins (Basel)	10.3390/toxins13020104	2021
	Performance of Verigene Rapid Diagnostic Testing for Detection of Inpatient Pediatric Bacteremia.	Howard AK, Claeys K, Biggs JM, Parbuoni KA, Johnson K, Luneburg P, Campbell J, Morgan JA.	J Pediatr Pharmacol Ther	10.5863/1551-6776-26.5.472	2021
	Clinical characteristics of bloodstream infections in adult patients with solid tumours and a nomogram for mortality prediction: a 5-year case-controlled retrospective study in a tertiary-level hospital.	Xue L, Zhu Y, Zong M, Jiao P, Fu J, Liang XM, Zhan J.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1228401	2023
	Novel genomic islands and a new vanD-subtype in the first sporadic VanD-type vancomycin resistant enterococci in Norway.	Al Rubaye MTS, Janice J, Bjornholt JV, Jakovljev A, Hultstrom ME, Sundsfjord A, Hegstad K.	PLoS One	10.1371/journal.pone.0255187	2021
	Digital Image Analysis for the Detection of Group B Streptococcus from ChromID Strepto B Medium Using PhenoMatrix Algorithms.	Baker J, Timm K, Faron M, Ledeboer N, Culbreath K.	J Clin Microbiol	10.1128/jcm.01902-19	2020
Enzymology	Erythromycin-resistant lactic acid bacteria in the healthy gut of vegans, ovo-lacto vegetarians and omnivores.	Milanovic V, Osimani A, Cardinali F, Litta-Mulondo A, Vignaroli C, Citterio B, Mangiaterra G, Aquilanti L, Garofalo C, Biavasco F, Cocolin L, Ferrocino I, Di Cagno R, Turroni S, Lazzi C, Pellegrini N, Clementi F.	PLoS One	10.1371/journal.pone.0220549	2019
	Bacteriocin production, antibiotic susceptibility and prevalence of haemolytic and gelatinase activity in faecal lactic acid bacteria isolated from healthy Ethiopian infants.	Birri DJ, Brede DA, Tessema GT, Nes IF.	Microb Ecol	10.1007/s00248-012-0134-7	2013
	Machine Learning Algorithms Highlight tRNA Information Content and Chargaff's Second Parity Rule Score as Important Features in Discriminating Probiotics from Non-Probiotics.	Bergamini CM, Bianchi N, Giaccone V, Catellani P, Alberghini L, Stella A, Biffani S, Yaddehige SK, Bobbo T, Taccioli C.	Biology (Basel)	10.3390/biology11071024	2022
Enzymology	[Bacteria isolated from surgical infections and its susceptibilities to antimicrobial agents--special references to bacteria isolated between April 2010 and March 2011].	Shinagawa N, Taniguchi M, Hirata K, Furuhata T, Fukuhara K, Mizugucwi T, Osanai H, Yanai Y, Hata F, Kihara C, Sasaki K, Oono K, Nakamura M, Shibuya H, Hasegawa I, Kimura M, Watabe K, Kobayashi Y, Yamaue H, Hirono S, Takesue Y, Fujiwara T, Shinoura S, Kimura H, Hoshikawa T, Oshima H, Aikawa N, Sasaki J, Suzuki M, Sekine K, Abe S, Takeyama H, Wakasugi T, Mashita K, Tanaka M, Mizuno A, Ishikawa M, Iwai A, Saito T, Muramoto M, Kubo S, Lee S, Fukuhara K, Iwagaki H, Tokunaga N, Sueda T, Hiyama E, Murakami Y, Ohge H, Uemura K, Tsumura H, Kanehiro T, Takeuchi H, Tanakaya K, Iwasaki M.	Jpn J Antibiot		2014
	Sodium butyrate reduces ammonia production in the cecum of laying hens by regulating ammonia-producing bacteria.	Liu S, Hu J, Li L, Xing S, Yang Y, Liao X.	Poult Sci	10.1016/j.psj.2022.102241	2023
	Isolation, Characterization, and Comparative Genomics of the Novel Potential Probiotics from Canine Feces.	Foongsawat N, Sunthornthummas S, Nantavisai K, Surachat K, Rangsiruji A, Sarawaneeyaruk S, Insian K, Sukontasing S, Suwannasai N, Pringsulaka O.	Food Sci Anim Resour	10.5851/kosfa.2023.e28	2023
	Flavin Mononucleotide-Dependent l-Lactate Dehydrogenases: Expanding the Toolbox of Enzymes for l-Lactate Biosensors.	Tsvik L, Steiner B, Herzog P, Haltrich D, Sutzl L.	ACS Omega	10.1021/acsomega.2c05257	2022
	Middle East respiratory syndrome coronavirus infection profile in Qatar: An 8-year experience.	Ben Abid F, El-Maki N, Alsoub H, Al Masalmani M, Al-Khal A, Valentine Coyle P, Ben Hadj Kacem MA, AlGazwani H, Al-Thani M, Eid Al-Romaihi H, Al-Hajri M, Elmoubashar F.	IDCases	10.1016/j.idcr.2021.e01161	2021
	Dysregulation of the Intestinal Microbiome in Patients With Haploinsufficiency of A20.	Toyofuku E, Takeshita K, Ohnishi H, Kiridoshi Y, Masuoka H, Kadowaki T, Nishikomori R, Nishimura K, Kobayashi C, Ebato T, Shigemura T, Inoue Y, Suda W, Hattori M, Morio T, Honda K, Kanegane H.	Front Cell Infect Microbiol	10.3389/fcimb.2021.787667	2021
Genetics	Tetracycline resistance in Listeria monocytogenes and L. innocua from wild black bears (Ursus americanus) in the United States is mediated by novel transposable elements.	Brown P, Hernandez K, Parsons C, Chen Y, Gould N, DePerno CS, Niedermeyer J, Kathariou S.	Appl Environ Microbiol	10.1128/aem.01205-23	2023
	Impact of cryoprotective agents on human gut microbes and in vitro stabilized artificial gut microbiota communities.	Alessandri G, Rizzo SM, Mancabelli L, Fontana F, Longhi G, Turroni F, van Sinderen D, Ventura M.	Microb Biotechnol	10.1111/1751-7915.14509	2024
	Computed Tomography-Based Quantitative Texture Analysis and Gut Microbial Community Signatures Predict Survival in Non-Small Cell Lung Cancer.	Dora D, Weiss GJ, Megyesfalvi Z, Gallfy G, Dulka E, Kerpel-Fronius A, Berta J, Moldvay J, Dome B, Lohinai Z.	Cancers (Basel)	10.3390/cancers15205091	2023
	Impacts of Maternal Diet and Alcohol Consumption during Pregnancy on Maternal and Infant Gut Microbiota.	Wang Y, Xie T, Wu Y, Liu Y, Zou Z, Bai J.	Biomolecules	10.3390/biom11030369	2021
Genetics	Detection and molecular characterization of VRE isolates in Slovakia from stool samples positive for Clostridioides difficile toxins.	Kuzma J, Palcova L, Timko J, Bastova V, Janoscova V, Chmelar D.	Folia Microbiol (Praha)	10.1007/s12223-022-01002-2	2022
	The science behind TCM and Gut microbiota interaction-their combinatorial approach holds promising therapeutic applications.	Xia W, Liu B, Tang S, Yasir M, Khan I.	Front Cell Infect Microbiol	10.3389/fcimb.2022.875513	2022
	In Vitro Antibacterial Activity of Imipenem/Relebactam against Clinical Isolates in Japan.	Kurihara D, Matsumoto S, Kishi N, Ishii Y, Mori M.	Microbiol Spectr	10.1128/spectrum.02235-21	2022
	Efficacy of Single and Multi-Strain Probiotics on In Vitro Strain Compatibility, Pathogen Inhibition, Biofilm Formation Capability, and Stress Tolerance.	Puvanasundram P, Chong CM, Sabri S, Yusoff MSM, Lim KC, Karim M.	Biology (Basel)	10.3390/biology11111644	2022
	Development and evaluation of a centrifugal disk system for the rapid detection of multiple pathogens and their antibiotic resistance genes in urinary tract infection.	Chen N, Li G, Si Y, Ye Y, Zhang T, Chi D, Zhang W, Pan L, Qu G, Lu Y, Zong M, Sui G, Fan L.	Front Microbiol	10.3389/fmicb.2023.1157403	2023
	Accounting Gut Microbiota as the Mediator of Beneficial Effects of Dietary (Poly)phenols on Skeletal Muscle in Aging.	Ticinesi A, Nouvenne A, Cerundolo N, Parise A, Meschi T.	Nutrients	10.3390/nu15102367	2023
	Monitoring horizontal antibiotic resistance gene transfer in a colonic fermentation model.	Haug MC, Tanner SA, Lacroix C, Stevens MJ, Meile L.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2011.01149.x	2011
	Isolation, identification and potential probiotic characterization of lactic acid bacteria from Thai traditional fermented food.	Suwannaphan S.	AIMS Microbiol	10.3934/microbiol.2021026	2021
	Profile of Bacterial Infections in COVID-19 Patients: Antimicrobial Resistance in the Time of SARS-CoV-2.	Stefanini I, De Renzi G, Foddai E, Cordani E, Mognetti B.	Biology (Basel)	10.3390/biology10090822	2021
	Plant quercetin degradation by gut bacterium Raoultella terrigena of ghost moth Thitarodes xiaojinensis.	Liu G, Cao L, Han R.	Front Microbiol	10.3389/fmicb.2022.1079550	2022
	Isolation and Characterization of Human Gut Bacteria Capable of Extracellular Electron Transport by Electrochemical Techniques.	Naradasu D, Miran W, Sakamoto M, Okamoto A.	Front Microbiol	10.3389/fmicb.2018.03267	2018
	Neoplastic sigmoid-uterine fistula. An exceptional complication of large intestine cancer.	Zanghi G, Leanza V, Vecchio R, D'Agati A, Cordova S, Rinzivillo NM, Lodato M, Leanza G.	G Chir	10.11138/gchir/2017.38.1.037	2017
	Acute appendicitis complicated with necrotizing fasciitis in a patient with adult-onset Still's disease: A case report.	Huang ZH, Chiu YC, Ho LL, Fan HL, Lu CC.	Medicine (Baltimore)	10.1097/md.0000000000009794	2018
	Is Pseudomonas infection associated with worse outcomes in pediatric perforated appendicitis?	Theodorou CM, Stokes SC, Hegazi MS, Brown EG, Saadai P.	J Pediatr Surg	10.1016/j.jpedsurg.2020.10.031	2021
Enzymology	Enterococcus populations in artisanal Manchego cheese: biodiversity, technological and safety aspects.	Nieto-Arribas P, Sesena S, Poveda JM, Chicon R, Cabezas L, Palop L.	Food Microbiol	10.1016/j.fm.2010.12.005	2011
	Cytomegalovirus pseudotumor of the colon in an HIV patient.	Lima M, Matos AP, Ramalho M.	Radiol Case Rep	10.1016/j.radcr.2018.11.009	2019
	Distribution and drug sensitivity of pathogenic bacteria in diabetic foot ulcer patients with necrotizing fasciitis at a diabetic foot center in China.	Li X, Du Z, Tang Z, Wen Q, Cheng Q, Cui Y.	BMC Infect Dis	10.1186/s12879-022-07382-7	2022
Genetics	Serotype Distribution of Streptococcus pneumoniae Isolates Causing Invasive and Non-Invasive Infections Using Whole-Genome Sequencing in Ethiopia.	Sharew B, Moges F, Yismaw G, Mihret A, Abebe W, Fentaw S, Tessema B.	Infect Drug Resist	10.2147/idr.s293578	2021
Pathogenicity	Antimicrobial resistance of enterococci isolated from mastitic bovine milk samples in Korea.	Nam HM, Lim SK, Moon JS, Kang HM, Kim JM, Jang KC, Kim JM, Kang MI, Joo YS, Jung SC.	Zoonoses Public Health	10.1111/j.1863-2378.2009.01307.x	2010
Phylogeny	Enterococcus species distribution among human and animal hosts using multiplex PCR.	Layton BA, Walters SP, Lam LH, Boehm AB.	J Appl Microbiol	10.1111/j.1365-2672.2010.04675.x	2010
Enzymology	Microbiologically confirmed meningoencephalitis due to Enterococcus avium: a first report.	Jones S, England R, Evans M, Soo SS, Venkatesan P.	J Infect	10.1016/j.jinf.2006.08.012	2007
	Metabolic Current Production by an Oral Biofilm Pathogen Corynebacterium matruchotii.	Naradasu D, Miran W, Okamoto A.	Molecules	10.3390/molecules25143141	2020
	Anti-Restriction Gene Homologs Are Highly Represented in Methicillin-Resistant and Multidrug-Resistant Staphylococcus aureus ST239 and ST398: Implications for Resistance Gene Acquisitions.	Silva DNS, Beltrame CO, Botelho AMN, Martini CL, Esteves MAC, Guedes IA, Dardenne LE, Figueiredo AMS.	Antibiotics (Basel)	10.3390/antibiotics11091217	2022
	Detection of Escherichia coli and Enterococcus spp. in dogs with polymicrobial urinary tract infections: A 5-year retrospective study.	Walker GK, Yustyniuk V, Shamoun J, Jacob ME, Correa M, Vaden SL, Borst LB.	J Vet Intern Med	10.1111/jvim.16445	2022
	Nomogram for predicting the prognosis of tumor patients with sepsis after gastrointestinal surgery.	Chen RX, Wu ZQ, Li ZY, Wang HZ, Ji JF.	World J Gastrointest Oncol	10.4251/wjgo.v14.i9.1771	2022
	Enterococcus species composition determined by capillary electrophoresis of the groESL gene spacer region DNA.	Yasuda M, Paar J, Doolittle M, Brochi J, Pancorbo OC, Tang RJ, Stoner RE, Shiaris MP.	Water Res	10.1016/j.watres.2010.05.007	2010
	In Vitro Biotransformation and Anti-Inflammatory Activity of Constituents and Metabolites of Filipendula ulmaria.	Van der Auwera A, Peeters L, Foubert K, Piazza S, Vanden Berghe W, Hermans N, Pieters L.	Pharmaceutics	10.3390/pharmaceutics15041291	2023
	Alterations of fecal antibiotic resistome in COVID-19 patients after empirical antibiotic exposure.	Kang Y, Chen S, Chen Y, Tian L, Wu Q, Zheng M, Li Z.	Int J Hyg Environ Health	10.1016/j.ijheh.2021.113882	2022
Phylogeny	Minimally invasive management of intrahepatic type II gallbladder perforation: a case report.	Alshammari D, Memeo R, Tzedakis S, Hargat J, Mutter D, Marescaux J, Pessaux P.	Hepatobiliary Surg Nutr	10.3978/j.issn.2304-3881.2015.08.02	2016
Enzymology	Bacteremia caused by non-faecalis and non-faecium enterococcus species at a Medical center in Taiwan, 2000 to 2008.	Tan CK, Lai CC, Wang JY, Lin SH, Liao CH, Huang YT, Wang CY, Lin HI, Hsueh PR.	J Infect	10.1016/j.jinf.2010.04.007	2010
	Enterococcus avium. An unusual cause of cerebral abscess.	Osoba AO, Kutub H, Waliuddin A, Sharab MO.	Neurosciences (Riyadh)		2005
	Extranodal natural killer/T-cell lymphoma presenting as cavernous sinus syndrome.	Mai HC, Chen DX, Lu D, Zhang YS.	Mol Clin Oncol	10.3892/mco.2017.1190	2017
	Antimicrobial resistance among canine enterococci in the northeastern United States, 2007-2020.	Osman M, Altier C, Cazer C.	Front Microbiol	10.3389/fmicb.2022.1025242	2022
	A series of enterococcal brain abscesses.	Maiti TK, Nagarathna S, Kumari HB, Shukla DP.	J Neurosci Rural Pract	10.4103/0976-3147.158774	2015
	Technological characterization of the natural lactic acid bacteria of artisanal Turkish White Pickled cheese	DAGDEMIR E, OZDEMIR S.	International journal of dairy technology.	10.1111/j.1471-0307.2008.00394.x	2008
Biotechnology	Genotypic diversity of lactic acid bacteria isolated from African traditional alkaline-fermented foods.	Ouoba LI, Nyanga-Koumou CA, Parkouda C, Sawadogo H, Kobawila SC, Keleke S, Diawara B, Louembe D, Sutherland JP.	J Appl Microbiol	10.1111/j.1365-2672.2009.04603.x	2010
	Redundant potassium transporter systems guarantee the survival of Enterococcus faecalis under stress conditions.	Acciarri G, Gizzi FO, Torres Manno MA, Stulke J, Espariz M, Blancato VS, Magni C.	Front Microbiol	10.3389/fmicb.2023.1117684	2023
	Community-acquired intracranial suppurative infections: A 15-year report.	Yildirmak T, Gedik H, Simsek F, Kanturk A.	Surg Neurol Int	10.4103/2152-7806.141891	2014
	Fulminant meningitis after radiotherapy for clival chordoma.	Kim SM, Park HW, Park MS, Chung SY, Park KS, Lee DS, Oh JT.	Brain Tumor Res Treat	10.14791/btrt.2013.1.2.107	2013
	Association of Streptococcus pluranimalium with valvular endocarditis and septicaemia in adult broiler parents.	Hedegaard L, Christensen H, Chadfield MS, Christensen JP, Bisgaard M.	Avian Pathol	10.1080/03079450902737763	2009
Phylogeny	Tox-positive Corynebacterium ulcerans in hedgehogs, Germany.	Berger A, Dangel A, Peters M, Muhldorfer K, Braune S, Eisenberg T, Szentiks CA, Rau J, Konrad R, Hormansdorfer S, Ackermann N, Sing A.	Emerg Microbes Infect	10.1080/22221751.2018.1562312	2019
	Isolation of Hermetia illucens larvae core gut microbiota by two different cultivation strategies.	Cifuentes Y, Vilcinskas A, Kampfer P, Glaeser SP.	Antonie Van Leeuwenhoek	10.1007/s10482-022-01735-7	2022
Enzymology	Contrasting diversity of vaginal lactobacilli among the females of Northeast India.	Das Purkayastha S, Bhattacharya MK, Prasad HK, Upadhyaya H, Lala SD, Pal K, Das M, Sharma GD, Bhattacharjee MJ.	BMC Microbiol	10.1186/s12866-019-1568-6	2019
	Brain abscess due to Enterococcus avium.	Mohanty S, Dhawan B, Kapil A, Das BK, Pandey P, Gupta A.	Am J Med Sci	10.1097/00000441-200503000-00011	2005
Biotechnology	Chemical markers for the evaluation of raw material hygienic quality in egg products.	Hidalgo A, Franzetti L, Rossi M, Pompei C.	J Agric Food Chem	10.1021/jf072201t	2008
	Rapid molecular detection of pathogenic microorganisms and antimicrobial resistance markers in blood cultures: evaluation and utility of the next-generation FilmArray Blood Culture Identification 2 panel.	Holma T, Torvikoski J, Friberg N, Nevalainen A, Tarkka E, Antikainen J, Martelin JJ.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-021-04314-2	2022
	Radiographic and ultrasonographic findings in a dog with emphysematous pyometra.	Mattei C, Fabbi M, Hansson K.	Acta Vet Scand	10.1186/s13028-018-0419-z	2018
	Enterococcus avium endocarditis.	Mirzoyev Z, Anavekar N, Wilson F, Uslan D, Baddour L, Mookadam F.	Scand J Infect Dis	10.1080/00365540410024754	2004
	Hypertension Programmed by Perinatal High-Fat Diet: Effect of Maternal Gut Microbiota-Targeted Therapy.	Hsu CN, Hou CY, Chan JYH, Lee CT, Tain YL.	Nutrients	10.3390/nu11122908	2019
	Coexistence of the Oxazolidinone Resistance-Associated Genes cfr and optrA in Enterococcus faecalis From a Healthy Piglet in Brazil.	Almeida LM, Gaca A, Bispo PM, Lebreton F, Saavedra JT, Silva RA, Basilio-Junior ID, Zorzi FM, Filsner PH, Moreno AM, Gilmore MS.	Front Public Health	10.3389/fpubh.2020.00518	2020
	Non-viable chicken embryos: an overlooked niche harbouring a significant source of multidrug resistant bacteria in the poultry production.	Karunarathna R, Ahmed KA, Liu M, Yu C, Popowich S, Goonewardene K, Gunawardana T, Kurukulasuriya S, Gupta A, Ayalew LE, Willson P, Ngeleka M, Gomis S.	Int J Vet Sci Med	10.1080/23144599.2019.1698145	2020
Pathogenicity	High prevalence of tetracycline resistance in Enterococcus isolates from broilers carrying the erm(B) gene.	Cauwerts K, Decostere A, De Graef EM, Haesebrouck F, Pasmans F.	Avian Pathol	10.1080/03079450701589167	2007
Biotechnology	Method for reliable isolation of Lactobacillus sakei strains originating from Tunisian seafood and meat products.	Najjari A, Ouzari H, Boudabous A, Zagorec M.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2007.11.045	2008
	A Case of Recurrent Skin Abscesses: A Conundrum Solved after Obtaining a Thorough Sexual History.	Peralta DP, Chang AY, Soto-Ruiz E.	Case Rep Infect Dis	10.1155/2017/4765697	2017
	Characteristics of PM_2.5 and Its Correlation with Feed, Manure and NH3 in a Pig-Fattening House.	Pu S, Peng S, Zhu J, Liu Z, Long D, Lim T.	Toxics	10.3390/toxics10030145	2022
	Hospital outbreak of vancomycin-resistant enterococci caused by a single clone of Enterococcus raffinosus and several clones of Enterococcus faecium.	Kawalec M, Kedzierska J, Gajda A, Sadowy E, Wegrzyn J, Naser S, Skotnicki AB, Gniadkowski M, Hryniewicz W.	Clin Microbiol Infect	10.1111/j.1469-0691.2007.01774.x	2007
	Antibiotic resistance and virulence genes in Enterococcus species isolated from raw and processed seafood.	Cardak M, Ozmen Togay S, Ay M, Karaalioglu O, Erol O, Bagci U.	J Food Sci Technol	10.1007/s13197-021-05313-z	2022
	Influence of microbiology on endodontic failure. Literature review.	Prada I, Mico-Munoz P, Giner-Lluesma T, Mico-Martinez P, Collado-Castellano N, Manzano-Saiz A.	Med Oral Patol Oral Cir Bucal	10.4317/medoral.22907	2019
Metabolism	Production of D-arabitol by a metabolic engineered strain of Bacillus subtilis.	Povelainen M, Miasnikov AN.	Biotechnol J	10.1002/biot.200500035	2006
	Antibiotic-impregnated cement spacer as definitive management for osteomyelitis.	Qiu XS, Zheng X, Shi HF, Zhu YC, Guo X, Mao HJ, Xu GY, Chen YX.	BMC Musculoskelet Disord	10.1186/s12891-015-0704-1	2015
	Appendicitis with psoas abscess successfully treated by laparoscopic surgery.	Otowa Y, Sumi Y, Kanaji S, Kanemitsu K, Yamashita K, Imanishi T, Nakamura T, Suzuki S, Tanaka K, Kakeji Y.	World J Gastroenterol	10.3748/wjg.v20.i25.8317	2014
Phylogeny	Use of MALDI-TOF MS and culturomics to identify mosquitoes and their midgut microbiota.	Tandina F, Almeras L, Kone AK, Doumbo OK, Raoult D, Parola P.	Parasit Vectors	10.1186/s13071-016-1776-y	2016
	Antilisterial activity of raw sheep milk from two native Epirus breeds: Culture-dependent identification, bacteriocin gene detection and primary safety evaluation of the antagonistic LAB biota.	Sioziou E, Kakouri A, Bosnea L, Samelis J.	Curr Res Microb Sci	10.1016/j.crmicr.2023.100209	2024
Phylogeny	New Insights Into Culturable and Unculturable Bacteria Across the Life History of Medicinal Maggots Lucilia sericata (Meigen) (Diptera: Calliphoridae).	Maleki-Ravasan N, Ahmadi N, Soroushzadeh Z, Raz AA, Zakeri S, Dinparast Djadid N.	Front Microbiol	10.3389/fmicb.2020.00505	2020
	Antimicrobial Activity and Immunomodulatory Properties of Acidocin A, the Pediocin-like Bacteriocin with the Non-Canonical Structure.	Antoshina DV, Balandin SV, Bogdanov IV, Vershinina MA, Sheremeteva EV, Toropygin IY, Finkina EI, Ovchinnikova TV.	Membranes (Basel)	10.3390/membranes12121253	2022
	Penetration of a divided cystoperitoneal shunt catheter into the transverse colon inducing acute mastitis.	Shimodaira K, Miyakura Y, Sadatomo A, Miyazaki C, Sasanuma H, Koinuma K, Horie H, Hozumi Y, Lefor AT, Yasuda Y.	J Surg Case Rep	10.1093/jscr/rjt039	2013
	Incarcerated diaphragmatic hernia with bowel perforation presenting as a tension pneumothorax.	Offman RP, Spencer RM.	West J Emerg Med	10.5811/westjem.2013.10.19034	2014
	[In vitro transfer of the aac(6')-aph(2") gene that confers aminoglycoside antibiotic resistance from Staphylococcus aureus to Enterococcus faecalis and Enterococcus avium].	Jarzembowski T.	Med Dosw Mikrobiol		2002
	A Cationic Amphipathic Tilapia Piscidin 4 Peptide-Based Antimicrobial Formulation Promotes Eradication of Bacterial Vaginosis-Associated Bacterial Biofilms.	Lin WC, Chen YR, Chuang CM, Chen JY.	Front Microbiol	10.3389/fmicb.2022.806654	2022
Metabolism	Bacterial species involved in the conversion of dietary flavonoids in the human gut.	Braune A, Blaut M.	Gut Microbes	10.1080/19490976.2016.1158395	2016
Genetics	The fusion of multi-omics profile and multimodal EEG data contributes to the personalized diagnostic strategy for neurocognitive disorders.	Han Y, Zeng X, Hua L, Quan X, Chen Y, Zhou M, Chuang Y, Li Y, Wang S, Shen X, Wei L, Yuan Z, Zhao Y.	Microbiome	10.1186/s40168-023-01717-5	2024
Pathogenicity	Epidemiology of multiresistant Enterococcus avium isolates in a Greek tertiary care hospital.	Papaparaskevas J, Tassios PT, Kalapothaki V, Avlami A, Legakis NJ, Vatopoulos AC.	Int J Antimicrob Agents	10.1016/s0924-8579(02)00238-8	2002
	Transferable Resistance Gene optrA in Enterococcus faecalis from Swine in Brazil.	Almeida LM, Lebreton F, Gaca A, Bispo PM, Saavedra JT, Calumby RN, Grillo LM, Nascimento TG, Filsner PH, Moreno AM, Gilmore MS.	Antimicrob Agents Chemother	10.1128/aac.00142-20	2020
	Microbiological analysis of acute infections of the nail fold on the basis of bait thread test.	Tomczak H, Danczak-Pazdrowska A, Polanska A, Osmola-Mankowska A, Pazdrowski J, Blazejewska-Gasior W, Horla A, Hasse-Cieslinska M, Adamski Z.	Postepy Dermatol Alergol	10.5114/ada.2017.67072	2017
	Complicated course of biliary inflammatory myofibroblastic tumor mimicking hilar cholangiocarcinoma: A case report and literature review.	Strainiene S, Sedleckaite K, Jarasunas J, Savlan I, Stanaitis J, Stundiene I, Strainys T, Liakina V, Valantinas J.	World J Clin Cases	10.12998/wjcc.v9.i21.6155	2021
Genetics	Complete Genomic Analysis of VRE From a Cattle Feedlot: Focus on 2 Antibiotic Resistance.	Foka FET, Mienie C, Bezuidenhout CC, Ateba CN.	Front Microbiol	10.3389/fmicb.2020.571958	2020
	In situ, in vivo, and in vitro approaches for studying AMR plasmid conjugation in the gut microbiome.	Kessler C, Hou J, Neo O, Buckner MMC.	FEMS Microbiol Rev	10.1093/femsre/fuac044	2023
Pathogenicity	Pyogenic hepatic abscess presenting years after a choledochojejunostomy: a rare clinical occurrence.	Yu M, Mangaonkar A, Lovelace C, Ibe M.	BMJ Case Rep	10.1136/bcr-2013-202266	2014
Metabolism	Regulation of Mannitol Metabolism in Enterococcus faecalis and Association with par_EF0409 Toxin-Antitoxin Locus Function.	Anbalagan S, Sadlon J, Weaver K.	J Bacteriol	10.1128/jb.00047-22	2022
Enzymology	Strategy using a new antigenic test for rapid diagnosis of Streptococcus pneumoniae infection in respiratory samples from children consulting at hospital.	Haddar CH, Joly J, Carricajo A, Verhoeven PO, Grattard F, Mory O, Begaud E, Germani Y, Cantais A, Pozzetto B.	BMC Microbiol	10.1186/s12866-020-01764-0	2020
Phylogeny	An Investigation of Enterococcus Species Isolated from the African Buffalo (Syncerus caffer) in Serengeti National Park, Tanzania.	Shin E, Mduma S, Keyyu J, Fyumagwa R, Lee Y.	Microbes Environ	10.1264/jsme2.me17025	2017
Phylogeny	A human-food web-animal interface on the prevalence of food-borne pathogens (Clostridia and Enterococcus) in mixed veterinary farms.	Prisilla A, Deena Remin M, Roja B, Chellapandi P.	Food Sci Biotechnol	10.1007/s10068-019-00595-8	2019
Enzymology	Risk factors and outcomes associated with non-Enterococcus faecalis, non-Enterococcus faecium enterococcal bacteremia.	de Perio MA, Yarnold PR, Warren J, Noskin GA.	Infect Control Hosp Epidemiol	10.1086/500000	2006
Metabolism	Conversion of Rutin, a Prevalent Dietary Flavonol, by the Human Gut Microbiota.	Riva A, Kolimar D, Spittler A, Wisgrill L, Herbold CW, Abranko L, Berry D.	Front Microbiol	10.3389/fmicb.2020.585428	2020
Pathogenicity	Use of Recombinant Endolysin to Improve Accuracy of Group B Streptococcus Tests.	Matsui H, Uchiyama J, Ogata M, Nasukawa T, Takemura-Uchiyama I, Kato SI, Murakami H, Higashide M, Hanaki H.	Microbiol Spectr	10.1128/spectrum.00077-21	2021
Genetics	Complete genome sequence of acetate-producing Klebsiella pneumoniae L5-2 isolated from infant feces.	Park YS, Kang J, Chung WH, Lim MY, Seo MJ, Nam YD, Yoon JH, Seo DH.	3 Biotech	10.1007/s13205-019-1578-y	2019
	Spontaneous intraventricular rupture of pyogenic brain abscess: A short series of three cases and review of literature.	Savardekar AR, Krishna R, Arivazhagan A.	Surg Neurol Int	10.4103/2152-7806.195231	2016
	Biosynthesis and Bioactivity of Prodiginine Analogs in Marine Bacteria, Pseudoalteromonas: A Mini Review.	Sakai-Kawada FE, Ip CG, Hagiwara KA, Awaya JD.	Front Microbiol	10.3389/fmicb.2019.01715	2019
Phylogeny	Characterization of culturable anaerobic bacteria from the forestomach of an eastern grey kangaroo, Macropus giganteus.	Ouwerkerk D, Klieve AV, Forster RJ, Templeton JM, Maguire AJ.	Lett Appl Microbiol	10.1111/j.1472-765x.2005.01774.x	2005
	An Overview of the Factors Involved in Biofilm Production by the Enterococcus Genus.	Schiopu P, Toc DA, Colosi IA, Costache C, Ruospo G, Berar G, Galbau SG, Ghilea AC, Botan A, Pana AG, Neculicioiu VS, Todea DA.	Int J Mol Sci	10.3390/ijms241411577	2023
	Enterococcal Cerebellopontine Angle Abscess in a 12-year-old Female.	Sonavane A, Baradkar V, Kumar S.	J Glob Infect Dis	10.4103/0974-777x.59255	2010
	Distribution of aminoglycoside resistance genes in recent clinical isolates of Enterococcus faecalis, Enterococcus faecium and Enterococcus avium.	Kobayashi N, Alam M, Nishimoto Y, Urasawa S, Uehara N, Watanabe N.	Epidemiol Infect	10.1017/s0950268801005271	2001
	Epidemiology and Resistance Patterns of Bacterial and Fungal Colonization of Biliary Plastic Stents: A Prospective Cohort Study.	Lubbert C, Wendt K, Feisthammel J, Moter A, Lippmann N, Busch T, Mossner J, Hoffmeister A, Rodloff AC.	PLoS One	10.1371/journal.pone.0155479	2016
Pathogenicity	Aflatoxins: History, Significant Milestones, Recent Data on Their Toxicity and Ways to Mitigation.	Pickova D, Ostry V, Toman J, Malir F.	Toxins (Basel)	10.3390/toxins13060399	2021
	Rapid and precise identification of bloodstream infections using a pre-treatment protocol combined with high-throughput multiplex genetic detection system.	Zhang J, Yang F, Sun Z, Fang Y, Zhu H, Zhang D, Zeng X, Liu W, Liu T, Liu Y, Chi W, Wang S, Ding L, Wu Y, Zhang Y, Zhao H.	BMC Infect Dis	10.1186/s12879-022-07793-6	2022
Pathogenicity	Antimicrobial susceptibility testing of vancomycin-resistant Enterococcus by the VITEK 2 system, and comparison with two NCCLS reference methods.	Kobayashi I, Muraoka H, Iyoda T, Nishida M, Hasegawa M, Yamaguchi K.	J Med Microbiol	10.1099/jmm.0.45765-0	2004
	Sex Differences in Infective Endocarditis: A Systematic Review.	Slouha E, Al-Geizi H, Albalat BR, Burle VS, Clunes LA, Kollias TF.	Cureus	10.7759/cureus.49815	2023
Enzymology	Enterococcus avium endocarditis in an infant with tetralogy of Fallot.	Swaminathan S, Ritter SB.	Pediatr Cardiol	10.1007/s002469900449	1999
	A Randomized Controlled Trial to Evaluate the Impact of a Novel Probiotic and Nutraceutical Supplement on Pruritic Dermatitis and the Gut Microbiota in Privately Owned Dogs.	Tate DE, Tanprasertsuk J, Jones RB, Maughan H, Chakrabarti A, Khafipour E, Norton SA, Shmalberg J, Honaker RW.	Animals (Basel)	10.3390/ani14030453	2024
	Colouterine fistula caused by diverticulitis of the sigmoid colon.	Choi PW.	J Korean Soc Coloproctol	10.3393/jksc.2012.28.6.321	2012
	Hematology and Culture Assessment of Cranially Implanted Rhesus Macaques (Macaca mulatta).	Theil JH, Johns JL, Chen P, Theil DM, Albertelli MA.	Comp Med	10.30802/aalas-cm-20-000084	2021
Pathogenicity	Species prevalence and antibacterial resistance of enterococci isolated in Kuwait hospitals.	Udo EE, Al-Sweih N, Phillips OA, Chugh TD.	J Med Microbiol	10.1099/jmm.0.04949-0	2003
Pathogenicity	[Yearly changes in antibacterial activities of cefozopran against various clinical isolates between 1996 and 2001--I. Gram-positive bacteria].	Suzuki Y, Nishinari C, Endo H, Hiramatsu N, Akiyama K, Koyama T.	Jpn J Antibiot		2003
	Non-vertebral Veillonella species septicemia and osteomyelitis in a patient with diabetes: a case report and review of the literature.	Al-Otaibi FE, Al-Mohizea MM.	J Med Case Rep	10.1186/1752-1947-8-365	2014
Metabolism	Enteric disposition and recycling of flavonoids and ginkgo flavonoids.	Liu Y, Liu Y, Dai Y, Xun L, Hu M.	J Altern Complement Med	10.1089/107555303322524481	2003
Enzymology	Promotion of endodontic lesions in rats by a novel extraradicular biofilm model using obturation materials.	Kuremoto K, Noiri Y, Ishimoto T, Yoneda N, Yamamoto R, Maezono H, Nakano T, Hayashi M, Ebisu S.	Appl Environ Microbiol	10.1128/aem.00421-14	2014
Biotechnology	Species distribution and antibiotic resistance patterns of enterococci isolated from food of animal origin in Germany.	Peters J, Mac K, Wichmann-Schauer H, Klein G, Ellerbroek L.	Int J Food Microbiol	10.1016/s0168-1605(03)00193-4	2003
	Bacterial meningoencephalitis in patients undergoing chronic hemodialysis: two case reports.	Fujimoto C, Yazawa S, Matsuoka F, Ishihara A, Hayami M, Kawasaki S.	Clin Neurol Neurosurg	10.1016/s0303-8467(01)00182-2	2002
Pathogenicity	Antibiotic resistance patterns of enterococci isolated from coastal bathing waters.	Arvanitidou M, Katsouyannopoulos V, Tsakris A.	J Med Microbiol	10.1099/0022-1317-50-11-1001	2001
	Hyponatremia in Children With Bacterial Meningitis.	Zheng F, Ye X, Shi X, Lin Z, Yang Z, Jiang L.	Front Neurol	10.3389/fneur.2019.00421	2019
Pathogenicity	Antimicrobial activity of imipenem against isolates from complicated urinary tract infections.	Ishihara S, Yamada T, Yokoi S, Ito M, Yasuda M, Nakano M, Kawada Y, Deguchi T.	Int J Antimicrob Agents	10.1016/s0924-8579(02)00099-7	2002
	Potential Application of Bacteriophages in Enrichment Culture for Improved Prenatal Streptococcus agalactiae Screening.	Uchiyama J, Matsui H, Murakami H, Kato SI, Watanabe N, Nasukawa T, Mizukami K, Ogata M, Sakaguchi M, Matsuzaki S, Hanaki H.	Viruses	10.3390/v10100552	2018
Enzymology	Isolation of Enterococcus avium from bile and blood in a patient with acute cholecystitis.	Verhaegen J, Pattyn P, Hinnekens P, Colaert J.	J Infect	10.1016/s0163-4453(97)91097-5	1997
	The Use of Bacteriophages and Immunological Monitoring for the Treatment of a Case of Chronic Septicemic Cutaneous Ulcerative Disease in a Loggerhead Sea Turtle Caretta caretta.	Greene W, Chan B, Bromage E, Grose JH, Walsh C, Kortright K, Forrest S, Perry G, Byrd L, Stamper MA.	J Aquat Anim Health	10.1002/aah.10130	2021
Phylogeny	The effects of amine-modified single-walled carbon nanotubes on the mouse microbiota.	Mulvey JJ, Littmann ER, Ling L, McDevitt MR, Pamer EG, Scheinberg DA.	Int J Nanomedicine	10.2147/ijn.s168554	2018
Phylogeny	Molecular analysis of bacterial flora associated with chronically inflamed maxillary sinuses.	Paju S, Bernstein JM, Haase EM, Scannapieco FA.	J Med Microbiol	10.1099/jmm.0.05062-0	2003
Phylogeny	Evaluation of antibacterial efficacy of drugs for urinary tract infections by genotyping based on pulsed-field gel electrophoresis (PFGE).	Osawa K, Nakajima M, Kataoka N, Arakawa S, Kamidono S.	J Infect Chemother	10.1007/s10156-002-0196-4	2002
Metabolism	Electro-fermentation triggering population selection in mixed-culture glycerol fermentation.	Moscoviz R, Trably E, Bernet N.	Microb Biotechnol	10.1111/1751-7915.12747	2018
Metabolism	Bacteriocin from honeybee beebread Enterococcus avium, active against Listeria monocytogenes.	Audisio MC, Terzolo HR, Apella MC.	Appl Environ Microbiol	10.1128/aem.71.6.3373-3375.2005	2005
	Guild-Level Microbiome Signature Associated with COVID-19 Severity and Prognosis.	Guo M, Wu G, Tan Y, Li Y, Jin X, Qi W, Guo X, Zhang C, Zhu Z, Zhao L.	mBio	10.1128/mbio.03519-22	2023
	New Insights into Cockroach Control: Using Functional Diversity of Blattella germanica Symbionts.	Pan X, Wang X, Zhang F.	Insects	10.3390/insects11100696	2020
Phylogeny	Comparison of direct colony method versus extraction method for identification of gram-positive cocci by use of Bruker Biotyper matrix-assisted laser desorption ionization-time of flight mass spectrometry.	Alatoom AA, Cunningham SA, Ihde SM, Mandrekar J, Patel R.	J Clin Microbiol	10.1128/jcm.00506-11	2011
	Emergence of linezolid resistance in a clinical Staphylococcus capitis isolate from Jiangsu Province of China in 2012.	Huang Y, Xu Y, Liu G, Mei Y, Xia W, Xu T, Gu B, Pan S.	J Thorac Dis	10.3978/j.issn.2072-1439.2014.02.13	2014
Enzymology	Comparison of two chromogenic media for the detection of vancomycin-resistant enterococcal carriage by nursing home residents.	Gouliouris T, Blane B, Brodrick HJ, Raven KE, Ambridge KE, Kidney AD, Hadjirin NF, Torok ME, Limmathurotsakul D, Peacock SJ.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2016.04.026	2016
Pathogenicity	Antimicrobial activity of everninomicin against clinical isolates of Enterococcus spp., Staphylococcus spp., and Streptococcus spp. tested by Etest.	Terakubo S, Takemura H, Yamamoto H, Ikejima H, Kunishima H, Kanemitsu K, Kaku M, Shimada J.	J Infect Chemother	10.1007/s101560170025	2001
	Bacteraemia, Malaria, and Case Fatality Among Children Hospitalized With Fever in Dar es Salaam, Tanzania.	Moyo SJ, Manyahi J, Blomberg B, Tellevik MG, Masoud NS, Aboud S, Manji K, Roberts AP, Hanevik K, Morch K, Langeland N.	Front Microbiol	10.3389/fmicb.2020.02118	2020
Pathogenicity	Enterococcal glycopeptide resistance at an Italian teaching hospital.	Bonadio M, Meini M, Tagliaferri E, Gigli C, Vigna A.	J Antimicrob Chemother	10.1093/jac/46.1.129	2000
Enzymology	Endocarditis caused by Enterococcus avium.	Perez-Castrillon JL, Martin-Luquero M, Martin-Escudero JC, Pascual P, Casero A, Herreros V.	Scand J Infect Dis	10.3109/00365549709011873	1997
	[Four cases of non-clostridial gas gangrene with diabetes mellitus].	Orimo H, Yamamoto O, Izu K, Murata K, Yasuda H.	J UOEH	10.7888/juoeh.24.55	2002
	A multicenter, double-blind, randomized, comparison study of the efficacy and safety of tigecycline to imipenem/cilastatin to treat complicated intra-abdominal infections in hospitalized subjects in China.	Chen Y, Zhu D, Zhang Y, Zhao Y, Chen G, Li P, Xu L, Yan P, Hickman MA, Xu X, Tawadrous M, Wible M.	Ther Clin Risk Manag	10.2147/tcrm.s171821	2018
	Rapid Identification and Antimicrobial Susceptibility Testing for Urinary Tract Pathogens by Direct Analysis of Urine Samples Using a MALDI-TOF MS-Based Combined Protocol.	Li W, Sun E, Wang Y, Pan H, Zhang Y, Li Y, Zhang X, Li C, Du L, Wang C.	Front Microbiol	10.3389/fmicb.2019.01182	2019
	A pancreatic abscess 7 years after a pancreatojejunostomy for calcifying chronic pancreatitis.	Suzuki A, Matsunaga T, Aoki S, Hirayama T, Nakagawa N, Shibata K, Yabana T, Kawasaki H, Takasaka H, Sasaki K, Katsuramaki T, Mukaiya M, Hirata K, Imai K.	J Gastroenterol	10.1007/s005350200179	2002
Pathogenicity	Susceptibility to quinupristin/dalfopristin and other antibiotics of vancomycin-resistant enterococci from the UK, 1997 to mid-1999.	Johnson AP, Warner M, Hallas G, Livermore DM.	J Antimicrob Chemother	10.1093/jac/46.1.125	2000
Pathogenicity	Depicting SARS-CoV-2 faecal viral activity in association with gut microbiota composition in patients with COVID-19.	Zuo T, Liu Q, Zhang F, Lui GC, Tso EY, Yeoh YK, Chen Z, Boon SS, Chan FK, Chan PK, Ng SC.	Gut	10.1136/gutjnl-2020-322294	2021
Phylogeny	Multicenter evaluation of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of Gram-positive aerobic bacteria.	Rychert J, Burnham CA, Bythrow M, Garner OB, Ginocchio CC, Jennemann R, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Sercia L, Westblade LF, Ferraro MJ, Branda JA.	J Clin Microbiol	10.1128/jcm.00682-13	2013
	Identification of enterococcal isolates by temperature gradient gel electrophoresis and partial sequence analysis of PCR-amplified 16S rDNA variable V6 regions.	Monstein HJ, Ahrne S, Molin G, Nikpour-Badr S, Jonasson J.	APMIS	10.1034/j.1600-0463.2001.090304.x	2001
	Clinical Features and Rate of Infective Endocarditis in Non-Faecalis and Non-faecium Enterococcal Bacteremia.	Jang HC, Park WB, Kim HB, Kim EC, Oh MD.	Chonnam Med J	10.4068/cmj.2011.47.2.111	2011
Pathogenicity	In vitro assessment of urinary isolates of ampicillin-resistant enterococci.	Williamson JC, Craft DW, Butts JD, Raasch RH.	Ann Pharmacother	10.1345/aph.1a085	2002
Pathogenicity	[Post-marketing surveillance of antibacterial activities of cefozopran against various clinical isolates--I. Gram-positive bacteria].	Igari J, Oguri T, Hiramatsu N, Akiyama K, Koyama T.	Jpn J Antibiot		2003
Pathogenicity	[Yearly changes in antibacterial activities of cefozopran against various clinical isolates between 1996 and 2000--I. Gram-positive bacteria].	Suzuki Y, Nishinari C, Endo H, Tamura C, Jinbo K, Hiramatsu N, Akiyama K, Koyama T.	Jpn J Antibiot		2002
Pathogenicity	Antimicrobial resistance of Enterococci in Lebanon.	Zouain MG, Araj GF.	Int J Antimicrob Agents	10.1016/s0924-8579(00)00347-2	2001
	The Interplay between Maternal and Post-Weaning High-Fat Diet and Gut Microbiota in the Developmental Programming of Hypertension.	Hsu CN, Hou CY, Lee CT, Chan JYH, Tain YL.	Nutrients	10.3390/nu11091982	2019
Pathogenicity	[Nationwide sensitivity surveillance of ciprofloxacin and various parenteral antibiotics against bacteria isolated from patients with severe infections--the first Ciproxan IV special investigation in 2001].	Yamaguchi K, Ishii Y, Iinuma Y, Yamanaka K, Ichiyama S, Watanabe N, Uehara N, Kaku M, Kurokawa Y, Hayashi M, Hirakata Y.	Jpn J Antibiot		2003
Genetics	Insights into plastic biodegradation: community composition and functional capabilities of the superworm (Zophobas morio) microbiome in styrofoam feeding trials.	Sun J, Prabhu A, Aroney STN, Rinke C.	Microb Genom	10.1099/mgen.0.000842	2022
	Gallbladder Mucocele: Variables Associated with Outcome and the Utility of Ultrasonography to Identify Gallbladder Rupture in 219 Dogs (2007-2016).	Jaffey JA, Graham A, VanEerde E, Hostnik E, Alvarez W, Arango J, Jacobs C, DeClue AE.	J Vet Intern Med	10.1111/jvim.14898	2018
Pathogenicity	Detection of Virulence Genes in Multidrug Resistant Enterococci Isolated from Feedlots Dairy and Beef Cattle: Implications for Human Health and Food Safety.	Tatsing Foka FE, Ateba CN.	Biomed Res Int	10.1155/2019/5921840	2019
	Clinical Performance of the Novel GenMark Dx ePlex Blood Culture ID Gram-Positive Panel.	Carroll KC, Reid JL, Thornberg A, Whitfield NN, Trainor D, Lewis S, Wakefield T, Davis TE, Church KG, Samuel L, Mills R, Jim P, Young S, Nolte FS.	J Clin Microbiol	10.1128/jcm.01730-19	2020
Pathogenicity	[Epidemiological study on vancomycin-resistant enterococci from fecal samples in the east area of Japan].	Oguri T, Misawa S, Nakamura A, Igari J, Ishii Y, Yamaguchi K.	Kansenshogaku Zasshi	10.11150/kansenshogakuzasshi1970.75.541	2001
Phylogeny	Random amplification of polymorphic DNA versus pulsed field gel electrophoresis of SmaI DNA macrorestriction fragments for typing strains of vancomycin-resistant enterococci.	van den Braak N, Power E, Anthony R, Endtz HP, Verbrugh HA, van Belkum A.	FEMS Microbiol Lett	10.1016/s0378-1097(00)00407-9	2000
	Enterococci from Raw-Milk Cheeses: Current Knowledge on Safety, Technological, and Probiotic Concerns.	Terzic-Vidojevic A, Veljovic K, Popovic N, Tolinacki M, Golic N.	Foods	10.3390/foods10112753	2021
Pathogenicity	Antimicrobial susceptibility and species identification for clinical isolates of enterococci.	Hsieh SR.	J Microbiol Immunol Infect		2000
	Tuberculous brain abscesses: Case series and review of literature.	Menon S, Bharadwaj R, Chowdhary A, Kaundinya D, Palande D.	J Neurosci Rural Pract	10.4103/0976-3147.83581	2011
	Biofilms in chronic diabetic foot ulcers--a study of 2 cases.	Neut D, Tijdens-Creusen EJ, Bulstra SK, van der Mei HC, Busscher HJ.	Acta Orthop	10.3109/17453674.2011.581265	2011
Pathogenicity	In-vitro activity of spiramycin and metronidazole alone or in combination against clinical isolates from odontogenic abscesses.	Roche Y, Yoshimori RN.	J Antimicrob Chemother	10.1093/jac/40.3.353	1997
Enzymology	Enterococcal bacteremia in children: a review of seventy-five episodes in a pediatric hospital.	Das I, Gray J.	Pediatr Infect Dis J	10.1097/00006454-199812000-00011	1998
Phylogeny	Clonal diversity of vancomycin-resistant enterococci from an outbreak in a tertiary care university hospital.	Pearce CL, Evans MK, Peters SM, Cole MF.	Am J Infect Control	10.1053/ic.1998.v26.a91614	1998
Pathogenicity	Heterogeneity of resistance elements in clinical isolates of enterococci with high-level gentamicin resistance.	Teng LJ, Liaw SJ, Hsueh PR, Ho SW, Luh KT.	J Formos Med Assoc		1998
	Bacteremia due to Enterococcus avium.	Patel R, Keating MR, Cockerill FR, Steckelberg JM.	Clin Infect Dis	10.1093/clinids/17.6.1006	1993
	Brain abscess formation as a CSF shunt complication: a case report.	Jamjoom AA, Waliuddin AR, Jamjoom AB.	Cases J	10.1186/1757-1626-2-110	2009
	The Potential Role of Phytonutrients Flavonoids Influencing Gut Microbiota in the Prophylaxis and Treatment of Inflammatory Bowel Disease.	Wang L, Gao M, Kang G, Huang H.	Front Nutr	10.3389/fnut.2021.798038	2021
	In vitro susceptibility studies and detection of vancomycin resistance genes in clinical isolates of enterococci in Nagasaki, Japan.	Hirakata Y, Yamaguchi T, Izumikawa K, Matsuda J, Tomono K, Kaku M, Koga H, Yamada Y, Kohno S, Kamihira S.	Epidemiol Infect	10.1017/s0950268897007954	1997
	Enterococcus avium bacteremia in association with ulcerative colitis.	Mellman RL, Spisak GM, Burakoff R.	Am J Gastroenterol		1992
	Categorical performance characteristics of method ISO 7899-2 and indicator value of intestinal enterococci for bathing water quality monitoring.	Tiwari A, Hokajarvi AM, Santo Domingo JW, Kauppinen A, Elk M, Ryu H, Jayaprakash B, Pitkanen T.	J Water Health	10.2166/wh.2018.293	2018
Genetics	FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science.	Sichtig H, Minogue T, Yan Y, Stefan C, Hall A, Tallon L, Sadzewicz L, Nadendla S, Klimke W, Hatcher E, Shumway M, Aldea DL, Allen J, Koehler J, Slezak T, Lovell S, Schoepp R, Scherf U.	Nat Commun	10.1038/s41467-019-11306-6	2019
Pathogenicity	Antimicrobial resistance profile of Enterococcus species isolated from intestinal tracts of hospitalized patients in Jimma, Ethiopia.	Abamecha A, Wondafrash B, Abdissa A, Abdissa A.	BMC Res Notes	10.1186/s13104-015-1200-2	2015
Enzymology	Identification and characterization of proteolytic activity of Enterococcus spp. isolated from milk and Roncal and Idiazábal cheese.	Arizcun C, Barcina Y, Torre P.	Int J Food Microbiol	10.1016/s0168-1605(97)00091-3	1997
Pathogenicity	Antimicrobial Resistance and Biofilm Formation in Enterococcus spp. Isolated from Humans and Turkeys in Poland.	Wozniak-Biel A, Bugla-Ploskonska G, Burdzy J, Korzekwa K, Ploch S, Wieliczko A.	Microb Drug Resist	10.1089/mdr.2018.0221	2019
	[Study on purple pigmentation in five cases with purple urine bag syndrome].	Nobukuni K, Kawahara S, Nagare H, Fujita Y.	Kansenshogaku Zasshi	10.11150/kansenshogakuzasshi1970.69.1269	1995
Enzymology	Detection and quantification of poultry probiotic bacteria in mixed culture using monoclonal antibodies in an enzyme-linked immunosorbent assay.	Durant JA, Young CR, Nisbet DJ, Stanker LH, Ricke SC.	Int J Food Microbiol	10.1016/s0168-1605(97)00102-5	1997
	Enterococcus spp. as a Producer and Target of Bacteriocins: A Double-Edged Sword in the Antimicrobial Resistance Crisis Context.	Almeida-Santos AC, Novais C, Peixe L, Freitas AR.	Antibiotics (Basel)	10.3390/antibiotics10101215	2021
	Periodontal microflora of HIV infected patients with periodontitis.	Nakou M, Kamma J, Gargalianos P, Laskaris G, Mitsis F.	Anaerobe	10.1006/anae.1997.0081	1997
Pathogenicity	Proton pump inhibitors affect the gut microbiome.	Imhann F, Bonder MJ, Vich Vila A, Fu J, Mujagic Z, Vork L, Tigchelaar EF, Jankipersadsing SA, Cenit MC, Harmsen HJ, Dijkstra G, Franke L, Xavier RJ, Jonkers D, Wijmenga C, Weersma RK, Zhernakova A.	Gut	10.1136/gutjnl-2015-310376	2016
Metabolism	Azoreductase activity of dye-decolorizing bacteria isolated from the human gut microbiota.	Zahran SA, Ali-Tammam M, Hashem AM, Aziz RK, Ali AE.	Sci Rep	10.1038/s41598-019-41894-8	2019
	[Bacteria isolated from surgical infections and their susceptibilities to antimicrobial agents: special references to bacteria isolated between July 1996 and June 1997].	Mashita K, Shinagawa N, Ishikawa S, Hirata K, Denno R, Mukaiya M, Mizuno A, Ishibiki K, Ushijima Y, Kinoshita H, Morimoto K, Aikawa N, Yamazaki M, Fujimoto M, Iwai S, Kato K, Tanimura H, Ohnishi H, Maeda T, Sato T, Tanaka N, Inoue F, Iwagaki H, Yura J, Tanaka S.	Jpn J Antibiot		1999
	A systematic scoping review of faropenem and other oral penems: treatment of Enterobacterales infections, development of resistance and cross-resistance to carbapenems.	Gandra S, Takahashi S, Mitrani-Gold FS, Mulgirigama A, Ferrinho DA.	JAC Antimicrob Resist	10.1093/jacamr/dlac125	2022
	Gut bacteria mediate aggregation in the German cockroach.	Wada-Katsumata A, Zurek L, Nalyanya G, Roelofs WL, Zhang A, Schal C.	Proc Natl Acad Sci U S A	10.1073/pnas.1504031112	2015
Enzymology	Vancomycin-resistant Enterococcus raffinosus: molecular epidemiology, species identification error, and frequency of occurrence in a national resistance surveillance program.	Wilke WW, Marshall SA, Coffman SL, Pfaller MA, Edmund MB, Wenzel RP, Jones RN.	Diagn Microbiol Infect Dis	10.1016/s0732-8893(97)00059-x	1997
	Efficacy and safety of vancomycin constant-rate infusion in the treatment of chronic Gram-positive bone and joint infections.	Bernard E, Perbost I, Carles M, Michiels A, Carsenti-Etesse H, Chichmanian RM, Dunais B, Dellamonica P.	Clin Microbiol Infect	10.1111/j.1469-0691.1997.tb00280.x	1997
Pathogenicity	[Drug sensitivity and expression of beta-lactamase in enterococci isolated at Okayama University Hospital].	Nasu Y, Watanabe T, Monden K, Sakuramoto K, Ono A, Tsugawa M, Kumon H, Ohmori H, Yasui T.	Kansenshogaku Zasshi	10.11150/kansenshogakuzasshi1970.69.919	1995
Phylogeny	Evaluation of PCR-reverse blot hybridization assay, REBA Sepsis-ID test, for simultaneous identification of bacterial pathogens and mecA and van genes from blood culture bottles.	Park SD, Lee G, Wang HY, Park M, Kim S, Kim H, Kim J, Kim YK, Kim HY, Lee H, Uh Y, Kim JB.	Ann Lab Med	10.3343/alm.2014.34.6.446	2014
Enzymology	Evaluation of a polymerase chain reaction assay for pathogen detection in septic patients under routine condition: an observational study.	Bloos F, Sachse S, Kortgen A, Pletz MW, Lehmann M, Straube E, Riedemann NC, Reinhart K, Bauer M.	PLoS One	10.1371/journal.pone.0046003	2012
Enzymology	Fatal Enterococcus durans aortic valve endocarditis: a case report and review of the literature.	Vijayakrishnan R, Rapose A.	BMJ Case Rep	10.1136/bcr-02-2012-5855	2012
Pathogenicity	[Comparative antimicrobial activity of RP 59,500 (quinupristin-dalfopristin), the first semisynthetic injectable streptgramin, against gram-positive cocci and other recent clinical pathogens].	Nakashio S, Iwasawa H, Iino S, Shimada J.	Jpn J Antibiot		1997
	Fermentation characteristics and lactic Acid bacteria succession of total mixed ration silages formulated with peach pomace.	Hu X, Hao W, Wang H, Ning T, Zheng M, Xu C.	Asian-Australas J Anim Sci	10.5713/ajas.14.0508	2015
Genetics	A comparative analysis of drinking water employing metagenomics.	Brumfield KD, Hasan NA, Leddy MB, Cotruvo JA, Rashed SM, Colwell RR, Huq A.	PLoS One	10.1371/journal.pone.0231210	2020
Phylogeny	Bacterial Associates of a Gregarious Riparian Beetle With Explosive Defensive Chemistry.	McManus R, Ravenscraft A, Moore W.	Front Microbiol	10.3389/fmicb.2018.02361	2018
Pathogenicity	Comparison of LY264826-gentamicin with vancomycin-gentamicin against enterococci from blood cultures.	Watanakunakorn C.	J Antimicrob Chemother	10.1093/jac/29.3.303	1992
	Characterization of Enterococcus Isolates Colonizing the Intestinal Tract of Intensive Care Unit Patients Receiving Selective Digestive Decontamination.	Bello Gonzalez TDJ, Pham P, Top J, Willems RJL, van Schaik W, van Passel MWJ, Smidt H.	Front Microbiol	10.3389/fmicb.2017.01596	2017
Genetics	Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients.	Gigliucci F, von Meijenfeldt FAB, Knijn A, Michelacci V, Scavia G, Minelli F, Dutilh BE, Ahmad HM, Raangs GC, Friedrich AW, Rossen JWA, Morabito S.	Front Cell Infect Microbiol	10.3389/fcimb.2018.00025	2018
Enzymology	Enterococcal and streptococcal species isolated from faeces of calves, young cattle and dairy cows.	Devriese LA, Laurier L, De Herdt P, Haesebrouck F.	J Appl Bacteriol	10.1111/j.1365-2672.1992.tb04877.x	1992
Pathogenicity	Multidrug-resistance and toxic metal tolerance of medically important bacteria isolated from an aquaculture system.	Resende JA, Silva VL, Fontes CO, Souza-Filho JA, Rocha de Oliveira TL, Coelho CM, Cesar DE, Diniz CG.	Microbes Environ	10.1264/jsme2.me12049	2012
	Comparison of patients with enterococcal bacteremia due to strains with and without high-level resistance to gentamicin.	Watanakunakorn C, Patel R.	Clin Infect Dis	10.1093/clinids/17.1.74	1993
	Growth inhibition of Clostridium difficile by intestinal flora of infant faeces in continuous flow culture.	Yamamoto-Osaki T, Kamiya S, Sawamura S, Kai M, Ozawa A.	J Med Microbiol	10.1099/00222615-40-3-179	1994
	Effect of a defined continuous-flow derived bacterial culture and dietary lactose on Salmonella typhimurium colonization in broiler chickens.	Nisbet DJ, Corrier DE, Scanlan CM, Hollister AG, Beier RC, DeLoach JR.	Avian Dis	10.2307/1591908	1993
	Enhancement of the productivity of the potent bacteriocin avicin A and improvement of its stability using nanotechnology approaches.	Fahim HA, Rouby WMAE, El-Gendy AO, Khairalla AS, Naguib IA, Farghali AA.	Sci Rep	10.1038/s41598-017-10157-9	2017
Pathogenicity	Comparison of in vitro inhibitory and bactericidal activities of daptomycin (LY 146032) and four reference antibiotics, singly and in combination, against gentamicin-susceptible and high-level-gentamicin-resistant enterococci.	Louie A, Baltch AL, Ritz WJ, Smith RP, Asperilla M.	Chemotherapy	10.1159/000239141	1993
Enzymology	Composition of the enterococcal and streptococcal intestinal flora of poultry.	Devriese LA, Hommez J, Wijfels R, Haesebrouck F.	J Appl Bacteriol	10.1111/j.1365-2672.1991.tb04661.x	1991
	Intra-abdominal Infections: The Role of Anaerobes, Enterococci, Fungi, and Multidrug-Resistant Organisms.	Marcus G, Levy S, Salhab G, Mengesha B, Tzuman O, Shur S, Burke E, Mayeda RC, Cochavi L, Perluk I, Zaidenstein R, Lazarovitch T, Dadon M, Marchaim D.	Open Forum Infect Dis	10.1093/ofid/ofw232	2016
	Efficacy of linezolid on gram-positive bacterial infection in elderly patients and the risk factors associated with thrombocytopenia.	Bi LQ, Zhou J, Huang M, Zhou SM.	Pak J Med Sci	10.12669/pjms.293.2925	2013
	Enterococcus columbae, a species from pigeon intestines.	Devriese LA, Ceyssens K, Rodrigues UM, Collins MD.	FEMS Microbiol Lett	10.1016/0378-1097(90)90228-i	1990
Pathogenicity	[Clinical features of enterococcal septicemia and antimicrobial susceptibilities for clinical isolates of enterococci in Nagoya University Hospital].	Kadoya M, Ichiyama S, Nada T, Iida E, Takeuchi J.	Kansenshogaku Zasshi	10.11150/kansenshogakuzasshi1970.65.1111	1991
Pathogenicity	Evaluation of BBL CHROMagar VanRE for detection of vancomycin-resistant Enterococci in rectal swab specimens.	Stamper PD, Shulder S, Bekalo P, Manandhar D, Ross TL, Speser S, Kingery J, Carroll KC.	J Clin Microbiol	10.1128/jcm.01522-10	2010
Metabolism	Characterization of D-Arabitol as Newly Discovered Carbon Source of Bacillus methanolicus.	Lopez MG, Irla M, Brito LF, Wendisch VF.	Front Microbiol	10.3389/fmicb.2019.01725	2019
Metabolism	[Affinities of PBPs of enterococci to cefepime and ampicillin].	Jin C.	Nihon Saikingaku Zasshi	10.3412/jsb.47.373	1992
	Efficacy and safety of moxifloxacin in hospitalized patients with secondary peritonitis: pooled analysis of four randomized phase III trials.	De Waele JJ, Tellado JM, Weiss G, Alder J, Kruesmann F, Arvis P, Hussain T, Solomkin JS.	Surg Infect (Larchmt)	10.1089/sur.2013.045	2014
Pathogenicity	In vitro activity of daptomycin against vancomycin-resistant enterococci of various Van types and comparison of susceptibility testing methods.	Jorgensen JH, Crawford SA, Kelly CC, Patterson JE.	Antimicrob Agents Chemother	10.1128/aac.47.12.3760-3763.2003	2003
Phylogeny	Prevalence, antibiotic susceptibility and virulence factors of Enterococcus species in racing pigeons (Columba livia f. domestica).	Dolka B, Czopowicz M, Chrobak-Chmiel D, Ledwon A, Szeleszczuk P.	BMC Vet Res	10.1186/s12917-019-2200-6	2020
	Plasmid-borne high-level resistance to gentamicin in Enterococcus hirae, Enterococcus avium, and Enterococcus raffinosus.	Straut M, de Cespedes G, Horaud T.	Antimicrob Agents Chemother	10.1128/aac.40.5.1263	1996
	Lactobacillus paracasei continuous ambulatory peritoneal dialysis-related peritonitis and review of the literature.	Neef PA, Polenakovik H, Clarridge JE, Saklayen M, Bogard L, Bernstein JM.	J Clin Microbiol	10.1128/jcm.41.6.2783-2784.2003	2003
Phylogeny	Invasive enterococcal infections in Poland: the current epidemiological situation.	Gawryszewska I, Zabicka D, Bojarska K, Malinowska K, Hryniewicz W, Sadowy E.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-016-2607-y	2016
Enzymology	Simultaneous detection of Streptococcus pneumoniae, S. mitis, and S. oralis by a novel multiplex PCR assay targeting the gyrB gene.	Kim W, Park HK, Hwang WJ, Shin HS.	J Clin Microbiol	10.1128/jcm.02920-12	2013
	The enterococci: evidence of species-specific clinical and microbiologic heterogeneity.	Mackowiak PA.	Am J Med Sci	10.1097/00000441-198904000-00008	1989
Enzymology	Studies of the subgingival microflora in patients with acquired immunodeficiency syndrome.	Zambon JJ, Reynolds HS, Genco RJ.	J Periodontol	10.1902/jop.1990.61.11.699	1990
Pathogenicity	Inducible and constitutive expression of resistance to glycopeptides and vancomycin dependence in glycopeptide-resistant Enterococcus avium.	Rosato A, Pierre J, Billot-Klein D, Buu-Hoi A, Gutmann L.	Antimicrob Agents Chemother	10.1128/aac.39.4.830	1995
Pathogenicity	[The influence of cefpirome on intestinal bacterial flora].	Iwata S, Ikeda M, Isohata E, Kin Y, Yokota T, Kusumoto Y, Sato Y, Akita H, Oikawa T, Sunakawa K.	Jpn J Antibiot		1991
	Significance of bacteria in oviposition and larval development of the sand fly Lutzomyia longipalpis.	Peterkova-Koci K, Robles-Murguia M, Ramalho-Ortigao M, Zurek L.	Parasit Vectors	10.1186/1756-3305-5-145	2012
	Protective Effects of Bifidobacterial Strains Against Toxigenic Clostridium difficile.	Wei Y, Yang F, Wu Q, Gao J, Liu W, Liu C, Guo X, Suwal S, Kou Y, Zhang B, Wang Y, Zheng K, Tang R.	Front Microbiol	10.3389/fmicb.2018.00888	2018
	The Penile Microbiota in Uncircumcised and Circumcised Men: Relationships With HIV and Human Papillomavirus Infections and Cervicovaginal Microbiota.	Onywera H, Williamson AL, Ponomarenko J, Meiring TL.	Front Med (Lausanne)	10.3389/fmed.2020.00383	2020
Enzymology	Use of Shotgun Metagenome Sequencing To Detect Fecal Colonization with Multidrug-Resistant Bacteria in Children.	Andersen H, Connolly N, Bangar H, Staat M, Mortensen J, Deburger B, Haslam DB.	J Clin Microbiol	10.1128/jcm.02638-15	2016
Phylogeny	Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.	Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carrico JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW.	Sci Rep	10.1038/s41598-018-31873-w	2018
Metabolism	Bacterial Semiochemicals and Transkingdom Interactions with Insects and Plants.	Calcagnile M, Tredici SM, Tala A, Alifano P.	Insects	10.3390/insects10120441	2019
Pathogenicity	Changes in enterococcal populations and related antibiotic resistance along a medical center-wastewater treatment plant-river continuum.	Leclercq R, Oberle K, Galopin S, Cattoir V, Budzinski H, Petit F.	Appl Environ Microbiol	10.1128/aem.03586-12	2013
	Considerations for studying transmission of antimicrobial resistant enteric bacteria between wild birds and the environment on intensive dairy and beef cattle operations.	Tormoehlen K, Johnson-Walker YJ, Lankau EW, Myint MS, Herrmann JA.	PeerJ	10.7717/peerj.6460	2019
	Molecular epidemiologic analysis of Enterococcus faecalis isolates in Cuba by multilocus sequence typing.	Quinones D, Kobayashi N, Nagashima S.	Microb Drug Resist	10.1089/mdr.2009.0028	2009
Genetics	Metagenomic characterization of ambulances across the USA.	O'Hara NB, Reed HJ, Afshinnekoo E, Harvin D, Caplan N, Rosen G, Frye B, Woloszynek S, Ounit R, Levy S, Butler E, Mason CE.	Microbiome	10.1186/s40168-017-0339-6	2017
	Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences.	Edgar RC.	PeerJ	10.7717/peerj.4652	2018
	Overexpression of Enterococcus faecalis elr operon protects from phagocytosis.	Cortes-Perez NG, Dumoulin R, Gaubert S, Lacoux C, Bugli F, Martin R, Chat S, Piquand K, Meylheuc T, Langella P, Sanguinetti M, Posteraro B, Rigottier-Gois L, Serror P.	BMC Microbiol	10.1186/s12866-015-0448-y	2015
Phylogeny	Evaluation of a new system, VITEK 2, for identification and antimicrobial susceptibility testing of enterococci.	Garcia-Garrote F, Cercenado E, Bouza E.	J Clin Microbiol	10.1128/jcm.38.6.2108-2111.2000	2000
	Antimicrobial Resistance, Virulence Determinants, and Biofilm Formation of Enterococcus Species From Ready-to-Eat Seafood.	Igbinosa EO, Beshiru A.	Front Microbiol	10.3389/fmicb.2019.00728	2019
Enzymology	Highly sensitive detection of Staphylococcus aureus directly from patient blood.	Banada PP, Chakravorty S, Shah D, Burday M, Mazzella FM, Alland D.	PLoS One	10.1371/journal.pone.0031126	2012
Phylogeny	Evaluation of a rapid direct assay for identification of bacteria and the mec A and van genes from positive-testing blood cultures.	Eigner U, Weizenegger M, Fahr AM, Witte W.	J Clin Microbiol	10.1128/jcm.43.10.5256-5262.2005	2005
Enzymology	Evidence for occurrence, persistence, and growth potential of Escherichia coli and enterococci in Hawaii's soil environments.	Byappanahalli MN, Roll BM, Fujioka RS.	Microbes Environ	10.1264/jsme2.me11305	2012
Phylogeny	Application of tRNA intergenic spacer PCR for identification of Enterococcus species.	Baele M, Baele P, Vaneechoutte M, Storms V, Butaye P, Devriese LA, Verschraegen G, Gillis M, Haesebrouck F.	J Clin Microbiol	10.1128/jcm.38.11.4201-4207.2000	2000
	Highly conjugative pMG1-like plasmids carrying Tn1546-like transposons that encode vancomycin resistance in Enterococcus faecium.	Tomita H, Tanimoto K, Hayakawa S, Morinaga K, Ezaki K, Oshima H, Ike Y.	J Bacteriol	10.1128/jb.185.23.7024-7028.2003	2003
Pathogenicity	Reducing Salt in Raw Pork Sausages Increases Spoilage and Correlates with Reduced Bacterial Diversity.	Fougy L, Desmonts MH, Coeuret G, Fassel C, Hamon E, Hezard B, Champomier-Verges MC, Chaillou S.	Appl Environ Microbiol	10.1128/aem.00323-16	2016
	Effect of in-feed administration and withdrawal of tylosin phosphate on antibiotic resistance in enterococci isolated from feedlot steers.	Beukers AG, Zaheer R, Cook SR, Stanford K, Chaves AV, Ward MP, McAllister TA.	Front Microbiol	10.3389/fmicb.2015.00483	2015
Phylogeny	Clostridium bacteraemia characterised by 16S ribosomal RNA gene sequencing.	Woo PC, Lau SK, Chan KM, Fung AM, Tang BS, Yuen KY.	J Clin Pathol	10.1136/jcp.2004.022830	2005
Pathogenicity	Comparison of Enterococcus raffinosus with Enterococcus avium on the basis of penicillin susceptibility, penicillin-binding protein analysis, and high-level aminoglycoside resistance.	Grayson ML, Eliopoulos GM, Wennersten CB, Ruoff KL, Klimm K, Sapico FL, Bayer AS, Moellering RC.	Antimicrob Agents Chemother	10.1128/aac.35.7.1408	1991
	Dynamic changes of microbial flora and therapeutic consequences in persistent peritonitis.	Montravers P, Dufour G, Guglielminotti J, Desmard M, Muller C, Houissa H, Allou N, Marmuse JP, Augustin P.	Crit Care	10.1186/s13054-015-0789-9	2015
	Identification of lactococci and enterococci by colony hybridization with 23S rRNA-targeted oligonucleotide probes.	Betzl D, Ludwig W, Schleifer KH.	Appl Environ Microbiol	10.1128/aem.56.9.2927-2929.1990	1990
	An Overview of the Control of Bacterial Pathogens in Cattle Manure.	Manyi-Loh CE, Mamphweli SN, Meyer EL, Makaka G, Simon M, Okoh AI.	Int J Environ Res Public Health	10.3390/ijerph13090843	2016
Enzymology	Caecal microbiota compositions from 7-day-old chicks reared in high-performance and low-performance industrial farms and systematic culturomics to select strains with anti-Campylobacter activity.	Duquenoy A, Ania M, Boucher N, Reynier F, Boucinha L, Andreoni C, Thomas V.	PLoS One	10.1371/journal.pone.0237541	2020
	Identification and antimicrobial resistance of microflora colonizing feral pig (Sus scrofa) of Brazilian Pantanal.	Lessa S, Paes R, Santoro P, Mauro R, Vieira-da-Motta O.	Braz J Microbiol	10.1590/s1517-838220110002000042	2011
	Consumer Exposure to Antimicrobial Resistant Bacteria From Food at Swiss Retail Level.	Jans C, Sarno E, Collineau L, Meile L, Stark KDC, Stephan R.	Front Microbiol	10.3389/fmicb.2018.00362	2018
Enzymology	Biochemical and genetic characterization of a novel enzyme of pentitol metabolism: D-arabitol-phosphate dehydrogenase.	Povelainen M, Eneyskaya EV, Kulminskaya AA, Ivanen DR, Kalkkinen N, Neustroev KN, Miasnikov AN.	Biochem J	10.1042/bj20021096	2003
Enzymology	Longer intestinal persistence of Enterococcus faecalis compared to Enterococcus faecium clones in intensive-care-unit patients.	Ruiz-Garbajosa P, del Campo R, Coque TM, Asensio A, Bonten M, Willems R, Baquero F, Canton R.	J Clin Microbiol	10.1128/jcm.01597-08	2009
Phylogeny	Gram stain-specific-probe-based real-time PCR for diagnosis and discrimination of bacterial neonatal sepsis.	Wu YD, Chen LH, Wu XJ, Shang SQ, Lou JT, Du LZ, Zhao ZY.	J Clin Microbiol	10.1128/jcm.02237-07	2008
Pathogenicity	Treatment of vancomycin-resistant enterococcal infections in the immunocompromised host: quinupristin-dalfopristin in combination with minocycline.	Raad I, Hachem R, Hanna H, Girgawy E, Rolston K, Whimbey E, Husni R, Bodey G.	Antimicrob Agents Chemother	10.1128/aac.45.11.3202-3204.2001	2001
Enzymology	Drug-resistant and hospital-associated Enterococcus faecium from wastewater, riverine estuary and anthropogenically impacted marine catchment basin.	Sadowy E, Luczkiewicz A.	BMC Microbiol	10.1186/1471-2180-14-66	2014
Phylogeny	Development of quantitative PCR assays targeting the 16S rRNA genes of Enterococcus spp. and their application to the identification of enterococcus species in environmental samples.	Ryu H, Henson M, Elk M, Toledo-Hernandez C, Griffith J, Blackwood D, Noble R, Gourmelon M, Glassmeyer S, Santo Domingo JW.	Appl Environ Microbiol	10.1128/aem.02802-12	2013
	Charting the Metabolic Landscape of the Facultative Methylotroph Bacillus methanolicus.	Delepine B, Lopez MG, Carnicer M, Vicente CM, Wendisch VF, Heux S.	mSystems	10.1128/msystems.00745-20	2020
	Real-time PCR assays for quantification and differentiation of Vibrio vulnificus strains in oysters and water.	Gordon KV, Vickery MC, DePaola A, Staley C, Harwood VJ.	Appl Environ Microbiol	10.1128/aem.01100-07	2008
Biotechnology	Influx of enterococci and associated antibiotic resistance and virulence genes from ready-to-eat food to the human digestive tract.	Macovei L, Zurek L.	Appl Environ Microbiol	10.1128/aem.01444-07	2007
Pathogenicity	A potential role for daptomycin in enterococcal infections: what is the evidence?	Canton R, Ruiz-Garbajosa P, Chaves RL, Johnson AP.	J Antimicrob Chemother	10.1093/jac/dkq087	2010
	Microbial source tracking: current methodology and future directions.	Scott TM, Rose JB, Jenkins TM, Farrah SR, Lukasik J.	Appl Environ Microbiol	10.1128/aem.68.12.5796-5803.2002	2002
Metabolism	Utilization of D-ribitol by Lactobacillus casei BL23 requires a mannose-type phosphotransferase system and three catabolic enzymes.	Bourand A, Yebra MJ, Boel G, Maze A, Deutscher J.	J Bacteriol	10.1128/jb.02276-12	2013
	High level resistance to aminoglycosides in enterococci from Riyadh.	Al-Ballaa SR, Qadri SM, Al-Ballaa SR, Kambal AM, Saldin H, Al-Qatary K.	Ann Saudi Med	10.5144/0256-4947.1994.290	1994
Metabolism	Novel listerial glycerol dehydrogenase- and phosphoenolpyruvate-dependent dihydroxyacetone kinase system connected to the pentose phosphate pathway.	Monniot C, Zebre AC, Ake FM, Deutscher J, Milohanic E.	J Bacteriol	10.1128/jb.00801-12	2012
	Late unilateral breast enlargement after insertion of silicone gel implants: A histopathological study.	Peters W, Fornasier V.	Can J Plast Surg	10.1177/229255030701500107	2007
Metabolism	Identification and phenotypic characterization of a beta-lactam-dependent, methicillin-resistant Staphylococcus aureus strain.	Goldstein F, Perutka J, Cuirolo A, Plata K, Faccone D, Morris J, Sournia A, Kitzis MD, Ly A, Archer G, Rosato AE.	Antimicrob Agents Chemother	10.1128/aac.00040-07	2007
Enzymology	Enhanced survival of Salmonella enterica in vesicles released by a soilborne Tetrahymena species.	Brandl MT, Rosenthal BM, Haxo AF, Berk SG.	Appl Environ Microbiol	10.1128/aem.71.3.1562-1569.2005	2005
Metabolism	Enterococcal surface protein, Esp, enhances biofilm formation by Enterococcus faecalis.	Tendolkar PM, Baghdayan AS, Gilmore MS, Shankar N.	Infect Immun	10.1128/iai.72.10.6032-6039.2004	2004
Enzymology	Comparison of the Roche LightCycler vanA/vanB detection assay and culture for detection of vancomycin-resistant enterococci from perianal swabs.	Sloan LM, Uhl JR, Vetter EA, Schleck CD, Harmsen WS, Manahan J, Thompson RL, Rosenblatt JE, Cockerill FR.	J Clin Microbiol	10.1128/jcm.42.6.2636-2643.2004	2004
	Intravenous doripenem at 500 milligrams versus levofloxacin at 250 milligrams, with an option to switch to oral therapy, for treatment of complicated lower urinary tract infection and pyelonephritis.	Naber KG, Llorens L, Kaniga K, Kotey P, Hedrich D, Redman R.	Antimicrob Agents Chemother	10.1128/aac.00837-08	2009
Phylogeny	Identification of alpha-hemolytic streptococci by pyrosequencing the 16S rRNA gene and by use of VITEK 2.	Haanpera M, Jalava J, Huovinen P, Meurman O, Rantakokko-Jalava K.	J Clin Microbiol	10.1128/jcm.01342-06	2007
Phylogeny	Identification of lactic acid bacteria from chili bo, a Malaysian food ingredient.	Leisner JJ, Pot B, Christensen H, Rusul G, Olsen JE, Wee BW, Muhamad K, Ghazali HM.	Appl Environ Microbiol	10.1128/aem.65.2.599-605.1999	1999
Pathogenicity	Antibiotic resistance patterns of enterococci and occurrence of vancomycin-resistant enterococci in raw minced beef and pork in Germany.	Klein G, Pack A, Reuter G.	Appl Environ Microbiol	10.1128/aem.64.5.1825-1830.1998	1998
Phylogeny	Array-based identification of species of the genera Abiotrophia, Enterococcus, Granulicatella, and Streptococcus.	Tung SK, Teng LJ, Vaneechoutte M, Chen HM, Chang TC.	J Clin Microbiol	10.1128/jcm.01712-06	2006
Pathogenicity	Antimicrobial therapy for bacillus anthracis-induced polymicrobial infection in (60)Co gamma-irradiated mice.	Elliott TB, Brook I, Harding RA, Bouhaouala SS, Shoemaker MO, Knudson GB.	Antimicrob Agents Chemother	10.1128/aac.46.11.3463-3471.2002	2002
Metabolism	Production of Optically Active Hexahydrocurcumin by Human Intestinal Bacterium in Vitro.	Niwa T, Yokoyama SI, Mochizuki M, Osawa T	Biol Pharm Bull	10.1248/bpb.b20-00584	2021
Phylogeny	Enterococcus pingfangensis sp. nov., Enterococcus dongliensis sp. nov., Enterococcus hulanensis sp. nov., Enterococcus nangangensis sp. nov. and Enterococcus songbeiensis sp. nov., isolated from Chinese traditional pickle juice.	Li YQ, Gu CT.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003608	2019
	Anaerobic flora, Selenomonas ruminis sp. nov., and the bacteriocinogenic Ligilactobacillus salivarius strain MP3 from crossbred-lactating goats.	Poothong S, Tanasupawat S, Chanpongsang S, Kingkaew E, Nuengjamnong C.	Sci Rep	10.1038/s41598-024-54686-6	2024
Enzymology	Enterococcus devriesei sp. nov., associated with animal sources.	Svec P, Vancanneyt M, Koort J, Naser SM, Hoste B, Vihavainen E, Vandamme P, Swings J, Bjorkroth J.	Int J Syst Evol Microbiol	10.1099/ijs.0.63851-0	2005
Phylogeny	Enterococcus hermanniensis sp. nov., from modified-atmosphere-packaged broiler meat and canine tonsils.	Koort J, Coenye T, Vandamme P, Sukura A, Bjorkroth J.	Int J Syst Evol Microbiol	10.1099/ijs.0.63112-0	2004
Phylogeny	Enterococcus phoeniculicola sp. nov., a novel member of the enterococci isolated from the uropygial gland of the Red-billed Woodhoopoe, Phoeniculus purpureus.	Law-Brown J, Meyers PR.	Int J Syst Evol Microbiol	10.1099/ijs.0.02334-0	2003
Phylogeny	Identification of enterococci from broiler products and a broiler processing plant and description of Enterococcus viikkiensis sp. nov.	Rahkila R, Johansson P, Sade E, Bjorkroth J.	Appl Environ Microbiol	10.1128/aem.02412-10	2011
Phylogeny	Enterococcus asini sp. nov. isolated from the caecum of donkeys (Equus asinus).	de Vaux A, Laguerre G, Divies C, Prevost H.	Int J Syst Bacteriol	10.1099/00207713-48-2-383	1998
Phylogeny	Peptoniphilus gorbachii sp. nov., Peptoniphilus olsenii sp. nov., and Anaerococcus murdochii sp. nov. isolated from clinical specimens of human origin.	Song Y, Liu C, Finegold SM.	J Clin Microbiol	10.1128/jcm.00213-07	2007

References

#9001	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20679
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40509	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68381	Automatically annotated from API rID32STR .
#68382	Automatically annotated from API zym .
#116670	Collection of Institut Pasteur ; Curators of the CIP; CIP 103019
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Enterococcus avium (DSM 20679, ATCC 14025, NCDO 2369)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

API rID32STR

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900447655

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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