Enterococcus avium (DSM 20063, R 6566, JCM 5700)

Name: Enterococcus avium (DSM 20063, R 6566, JCM 5700)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5269

Type strain

Strain Designation R 6566

Culture col. no. DSM 20063 R 6566 JCM 5700

NCBI tax ID(s) 33945

Special Collections DSMZ JCM

History <- H.D. Slade, R 6566 DSM 20063 <-- H. D. Slade R 6566 ("Streptococcus avium").

Links

Enterococcus avium R 6566 is a bacterium of the family Enterococcaceae.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 2239

LMG 11394,DSM 20063,JCM 5700

@ref 20215

Last LPSN update 2026-02-09 11:18:55

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Enterococcus

Species Enterococcus avium

Full scientific name Enterococcus avium (ex Nowlan and Deibel 1967) Collins et al. 1984

BacDive ID	Other strains from **Enterococcus avium** (16)	Type strain
5270	E. avium E6844, W17, DSM 20679, ATCC 14025, NCDO 2369, ... (type strain)
135961	E. avium D 373, CIP 82.12
136236	E. avium AmMS 237, CIP 103629, ATCC 49462
136254	E. avium AmMS 112, CIP 104053, ATCC 49463
138669	E. avium AmMS 239, CIP 104054, ATCC 49464
146195	E. avium CCUG 30570, CCM 4050
148009	E. avium CCUG 34661, LMG 16309
148012	E. avium CCUG 34669, LMG 16310
151792	E. avium CCUG 44888
154038	E. avium CCUG 52072
155305	E. avium CCUG 57268
155336	E. avium CCUG 57363
155356	E. avium CCUG 57437
155546	E. avium CCUG 58087
155690	E. avium CCUG 59013
169219	E. avium S68, TW200-6-DD-B, DSM 106040

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8493	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8493	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8493	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Murein

@ref	Murein short key	Type
8493	A11.31	A4alpha L-Lys-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68381	16899 ChEBI	D-mannitol	+	builds acid from	from API rID32STR
68381	16988 ChEBI	D-ribose	+	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	+	builds acid from	from API rID32STR
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	+	builds acid from	from API rID32STR
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68381	30911 ChEBI	sorbitol	+	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	-	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68381	15688 ChEBI	acetoin	+	from API rID32STR

Enzymes

@ref	Value	Activity	Ec
68381	Alanyl-Phenylalanyl-Proline arylamidase	+		from API rID32STR
68381	alkaline phosphatase	-	3.1.3.1	from API rID32STR
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
68381	glycyl tryptophan arylamidase	+		from API rID32STR
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68381	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32STR
68381	urease	-	3.5.1.5	from API rID32STR

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
8493	-	+	-	-	-	-	+	+	+	+	+	-	-	+	-	-	+	+	-	+	-	+	-	-	-	+	-	+/-	+/-	+	-	-
8493	-	+	-	-	-	-	+	+	+	+	+	-	-	+	-	-	+	+	-	+	-	+	-	-	-	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8493	2	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Enterococcus avium gene for 16S ribosomal RNA, partial sequence, strain: JCM 5700	LC269274	1500		33945

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Colonization patterns of Enterococcus cecorum in two different broiler production cycles detected with a newly developed quantitative real-time PCR.	Jung A, Petersen H, Teske L, Rautenschlein S.	BMC Microbiol	10.1186/s12866-017-1021-7	2017
	Identification of lactococci and enterococci by colony hybridization with 23S rRNA-targeted oligonucleotide probes.	Betzl D, Ludwig W, Schleifer KH.	Appl Environ Microbiol	10.1128/aem.56.9.2927-2929.1990	1990
Phylogeny	Description and evaluation of the semiautomated 4-hour rapid ID 32 Strep method for identification of streptococci and members of related genera.	Freney J, Bland S, Etienne J, Desmonceaux M, Boeufgras JM, Fleurette J.	J Clin Microbiol	10.1128/jcm.30.10.2657-2661.1992	1992

References

#8493	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20063
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68381	Automatically annotated from API rID32STR .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Enterococcus avium (DSM 20063, R 6566, JCM 5700)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Murein

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32STR

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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