Name: Paraliobacillus quinghaiensis YIM-C158
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1385

Type strain:

Species: Paraliobacillus quinghaiensis

Strain Designation: YIM-C158

Culture col. no.: DSM 17857, CGMCC 1.6333

Strain history: <- X. L. Cui and Y.-G. Chen, YIM; YIM-C158

NCBI tax ID(s): 470815 (species)

SI-ID 399372

DSM 17857

Section

Paraliobacillus quinghaiensis YIM-C158 is an obligate aerobe, moderately halophilic, chemoorganoheterotroph bacterium that forms circular colonies and was isolated from sediment sample collected from the Dabuxun salt lake in the Qaidam Basin.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
chemoorganoheterotroph
mesophilic
moderately halophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Paraliobacillus*
	Species	**Paraliobacillus quinghaiensis**
	Full Scientific Name (LPSN)	Paraliobacillus quinghaiensis Chen et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #23016]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23016]	Cell length	3.0-5.0 µm

[Ref.: #23016]	Cell width	0.4-0.6 µm

[Ref.: #23016]	Cell shape	rod-shaped

[Ref.: #23016]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.254

[Ref.: #23016]	Flagellum arrangement	peritrichous

[Ref.: #23016]	Colony size	1.0-2.0 mm
[Ref.: #23016]	Colony color	creamy white to pale yellow
[Ref.: #23016]	Colony shape	circular
[Ref.: #23016]	Incubation period	4-5 days
[Ref.: #23016]	Cultivation medium used	MMA5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7143]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7143]

Culture medium growth

[Ref.: #7143]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7143]

Culture medium composition

expand / minimize

[Ref.: #23016]

Culture medium

MMA5

[Ref.: #23016]

Culture medium growth

		Temperature
[Ref.: #7143]	growth	30 °C
[Ref.: #23016]	growth	4.0-50.0 °C
[Ref.: #23016]	optimum	37.0 °C

[Ref.: #7143]	Temperature range	mesophilic
[Ref.: #23016]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23016]			optimum	8.0
[Ref.: #23016]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23016]

Oxygen tolerance

obligate aerobe

[Ref.: #23016]

Nutrition type

chemoorganoheterotroph

[Ref.: #23016]	Spore description	ellipsoidal,terminal or subterminal,in swollen sporangia
[Ref.: #23016]	Type of spore	endospore
[Ref.: #23016]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %97
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

[Ref.: #23016]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23016]		NaCl		growth	1.0-20.0	%(w/v)
[Ref.: #23016]		NaCl		optimum	5.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23016]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #23016]	alpha-lactose ChEBI	+	respiration
[Ref.: #23016]	arbutin ChEBI	+	respiration
[Ref.: #23016]	casein	-	hydrolysis
[Ref.: #23016]	cellobiose ChEBI	+	respiration
[Ref.: #23016]	cellulose ChEBI	-	hydrolysis
[Ref.: #23016]	chitin ChEBI	-	hydrolysis
[Ref.: #23016]	D-arabinose ChEBI	+	builds acid from
[Ref.: #23016]	D-mannitol ChEBI	+	respiration
[Ref.: #23016]	D-ribose ChEBI	+	respiration
[Ref.: #23016]	D-xylose ChEBI	+	respiration
[Ref.: #23016]	gelatin ChEBI	-	hydrolysis
[Ref.: #23016]	glucose ChEBI	+	fermentation
[Ref.: #23016]	glycerol ChEBI	+	respiration
[Ref.: #23016]	L-alanine ChEBI	+	respiration
[Ref.: #23016]	L-arabinose ChEBI	+	respiration
[Ref.: #23016]	L-asparagine ChEBI	+	respiration
[Ref.: #23016]	L-serine ChEBI	+	respiration
[Ref.: #23016]	maltose ChEBI	+	builds acid from
[Ref.: #23016]	maltose ChEBI	+	respiration
[Ref.: #23016]	methyl alpha-D-glucopyranoside ChEBI	+	respiration
[Ref.: #23016]	nitrate ChEBI	+	reduction
[Ref.: #23016]	starch ChEBI	+	hydrolysis
[Ref.: #23016]	sucrose ChEBI	+	respiration
[Ref.: #23016]	trehalose ChEBI	+	respiration
[Ref.: #23016]	tween 20 ChEBI	-	hydrolysis
[Ref.: #23016]	tween 80 ChEBI	-	hydrolysis
[Ref.: #23016]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23016]	acetoin ChEBI	no
[Ref.: #23016]	hydrogen sulfide ChEBI	no
[Ref.: #23016]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #23016]		acetoin ChEBI	-
[Ref.: #23016]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #23016]	acid phosphatase	+	3.1.3.2
[Ref.: #23016]	alkaline phosphatase	+	3.1.3.1
[Ref.: #23016]	alpha-glucosidase	+	3.2.1.20
[Ref.: #23016]	beta-galactosidase	+	3.2.1.23
[Ref.: #23016]	beta-glucosidase	+	3.2.1.21
[Ref.: #23016]	beta-glucuronidase	+	3.2.1.31
[Ref.: #23016]	catalase	+	1.11.1.6
[Ref.: #23016]	cytochrome oxidase	+	1.9.3.1
[Ref.: #23016]	esterase (C 4)	+
[Ref.: #23016]	esterase lipase (C 8)	+
[Ref.: #23016]	leucine arylamidase	+	3.4.11.1
[Ref.: #23016]	lipase (C 14)	+
[Ref.: #23016]	naphthol-AS-BI-phosphohydrolase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7143]	Sample type/isolated from	sediment sample collected from the Dabuxun salt lake in the Qaidam Basin
[Ref.: #7143]	Geographic location (country and/or sea, region)	north-west China, Qinghai Province
[Ref.: #7143]	Country	China
[Ref.: #7143]	Country ISO 3 Code	CHN
[Ref.: #7143]	Continent	Asia

[Ref.: #23016]	Enrichment culture	marine agar 2216 (MA, pH 7.2; Difco) supplemented with 10 % (w/v) NaCl
[Ref.: #23016]	Enrichment culture temperature	28.0 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU135728 (>99% sequence identity) for Paraliobacillus quinghaiensis subclade from Microbeatlas

Aquatic Samples	34
Soil Samples	18
Animal Samples	39
Plant Samples	6
Total Samples	97

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7143]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7143]	Paraliobacillus quinghaiensis strain YIM C158 16S ribosomal RNA gene, partial sequence	EU135728	1522	ENA	470815 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraliobacillus quinghaiensis YIM-C158	GCA_003426025	contig	GenBank	470815 tax ID	*
[Ref.: #66792]	Paraliobacillus quinghaiensis CGMCC 1.6333	GCA_014645115	scaffold	GenBank	470815 tax ID	*
[Ref.: #66792]	Paraliobacillus quinghaiensis strain CGMCC 1.6333	470815.5	wgs	PATRIC	470815 tax ID	*
[Ref.: #66792]	Paraliobacillus quinghaiensis YIM-C158	2832713448	draft	JGI IMG/M	470815 tax ID	*

[Ref.: #7143]

GC-content

39.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paraliobacillus quinghaiensis CGMCC 1.6333 NCBI: GCA_014645115.1
[Ref.: #69481]	spore-forming	yes	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paraliobacillus quinghaiensis CGMCC 1.6333 NCBI: GCA_014645115.1
[Ref.: #69480]	flagellated	yes	90.234	yes
[Ref.: #69480]	gram-positive	yes	87.992	yes
[Ref.: #69480]	anaerobic	no	94.889	yes
[Ref.: #69480]	aerobic	yes	56.896	no
[Ref.: #69480]	halophile	yes	90.296	no
[Ref.: #69480]	spore-forming	yes	90.788	no
[Ref.: #69480]	glucose-util	yes	87.659	no
[Ref.: #69480]	thermophile	no	98.278	yes
[Ref.: #69480]	motile	yes	90.149	yes
[Ref.: #69480]	glucose-ferment	no	64.772	yes

Availability in culture collections External links

[Ref.: #7143]

Culture collection no.

DSM 17857, CGMCC 1.6333

[Ref.: #71036]

SI-ID 399372

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraliobacillus salinarum sp. nov., isolated from saline soil in Yingkou, China.	Yin YL, Li FL, Du XY, Zhang YX, Wang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004877	2021	*
Phylogeny	Paraliobacillus sediminis sp. nov., isolated from East China sea sediment.	Cao WR, Guo LY, Du ZJ, Das A, Saren G, Jiang MY, Dunlap CA, Rooney AP, Yu XK, Li TG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001767	2017	*
Phylogeny	Aquibacillus halophilus gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Virgibacillus koreensis as Aquibacillus koreensis comb. nov. and Virgibacillus albus as Aquibacillus albus comb. nov.	Amoozegar MA, Bagheri M, Didari M, Mehrshad M, Schumann P, Sproer C, Sanchez-Porro C, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.065375-0	2014	*
Phylogeny	Alkalilactibacillus ikkensis, gen. nov., sp. nov., a novel enzyme-producing bacterium from a cold and alkaline environment in Greenland.	Schmidt M, Prieme A, Johansen A, Stougaard P	Extremophiles	10.1007/s00792-012-0430-7	2012	*
Phylogeny	Paraliobacillus quinghaiensis sp. nov., isolated from salt-lake sediment in China.	Chen YG, Cui XL, Zhang YQ, Li WJ, Wang YX, Xu LH, Wen ML, Peng Q, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.65735-0	2009	*

References

#7143

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17857

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23016

Yi-Guang Chen,Xiao-Long Cui,Yu-Qin Zhang,Wen-Jun Li,Yong-Xia Wang,Li-Hua Xu,Meng-Liang Wen,Qian Peng,Cheng-Lin Jiang: Paraliobacillus quinghaiensis sp. nov., isolated from salt-lake sediment in China. IJSEM 59: 28 - 33 2009 ( DOI 10.1099/ijs.0.65735-0 , PubMed 19126718 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71036

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399372.1 )

* These data were automatically processed and therefore are not curated

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Paraliobacillus quinghaiensis CGMCC 1.6333

Paraliobacillus quinghaiensis CGMCC 1.6333

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