Paraliobacillus quinghaiensis (DSM 17857, CGMCC 1.6333, YIM-C158)

Name: Paraliobacillus quinghaiensis (DSM 17857, CGMCC 1.6333, YIM-C158)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1385

Type strain

Strain Designation YIM-C158

Culture col. no. DSM 17857 CGMCC 1.6333 YIM-C158

NCBI tax ID(s) 470815

Special Collections DSMZ Literature strains

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Paraliobacillus quinghaiensis YIM-C158 is an obligate aerobe, moderately halophilic, chemoorganoheterotroph prokaryote that forms circular colonies and was isolated from sediment sample collected from the Dabuxun salt lake in the Qaidam Basin.

colony-forming rod-shaped motile Gram-positive spore-forming chemoorganoheterotroph mesophilic moderately halophilic obligate aerobe 16S sequence genome sequence

Name and taxonomic classification

SI-ID 399372

DSM 17857

@ref 20215

Last LPSN update 2025-12-16 09:47:05

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Paraliobacillus

Species Paraliobacillus quinghaiensis

Full scientific name Paraliobacillus quinghaiensis Chen et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
23016	positive	3.0-5.0 µm	0.4-0.6 µm	rod-shaped		peritrichous

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
23016	1.0-2.0 mm	creamy white to pale yellow	circular	4-5 days	MMA5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7143	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23016	MMA5

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7143	positive	growth	30	mesophilic
23016	positive	growth	4.0-50.0
23016	positive	optimum	37.0	mesophilic

Culture pH

@ref	Ability	Type	PH
23016	positive	optimum	8.0
23016	positive	growth	6.0-10.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
23016	obligate aerobe
125439	obligate aerobe

Nutrition type

23016

Typechemoorganoheterotroph

Spore formation

@ref	Spore description	Type of spore	Spore formation
23016	ellipsoidal,terminal or subterminal,in swollen sporangia	endospore
125438

Halophily

@ref	Halophily level
23016	moderately halophilic
23016
23016

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23016	16808 ChEBI	2-dehydro-D-gluconate	+	builds acid from
23016	36219 ChEBI	alpha-lactose	+	respiration
23016	18305 ChEBI	arbutin	+	respiration
23016		casein	-	hydrolysis
23016	17057 ChEBI	cellobiose	+	respiration
23016	62968 ChEBI	cellulose	-	hydrolysis
23016	17029 ChEBI	chitin	-	hydrolysis
23016	17108 ChEBI	D-arabinose	+	builds acid from
23016	16899 ChEBI	D-mannitol	+	respiration
23016	16988 ChEBI	D-ribose	+	respiration
23016	65327 ChEBI	D-xylose	+	respiration
23016	5291 ChEBI	gelatin	-	hydrolysis
23016	17234 ChEBI	glucose	+	fermentation
23016	17754 ChEBI	glycerol	+	respiration
23016	16977 ChEBI	L-alanine	+	respiration
23016	30849 ChEBI	L-arabinose	+	respiration
23016	17196 ChEBI	L-asparagine	+	respiration
23016	17115 ChEBI	L-serine	+	respiration
23016	17306 ChEBI	maltose	+	builds acid from
23016	17306 ChEBI	maltose	+	respiration
23016	320061 ChEBI	methyl alpha-D-glucopyranoside	+	respiration
23016	17632 ChEBI	nitrate	+	reduction
23016	28017 ChEBI	starch	+	hydrolysis
23016	17992 ChEBI	sucrose	+	respiration
23016	27082 ChEBI	trehalose	+	respiration
23016	53424 ChEBI	tween 20	-	hydrolysis
23016	53426 ChEBI	tween 80	-	hydrolysis
23016	16199 ChEBI	urea	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite
23016	15688 ChEBI	acetoin
23016	16136 ChEBI	hydrogen sulfide
23016	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
23016	15688 ChEBI	acetoin	-
23016	17234 ChEBI	glucose

Enzymes

@ref	Value	Activity	Ec
23016	acid phosphatase	+	3.1.3.2
23016	alkaline phosphatase	+	3.1.3.1
23016	alpha-glucosidase	+	3.2.1.20
23016	beta-galactosidase	+	3.2.1.23
23016	beta-glucosidase	+	3.2.1.21
23016	beta-glucuronidase	+	3.2.1.31
23016	catalase	+	1.11.1.6
23016	cytochrome oxidase	+	1.9.3.1
23016	esterase (C 4)	+
23016	esterase lipase (C 8)	+
23016	leucine arylamidase	+	3.4.11.1
23016	lipase (C 14)	+
23016	naphthol-AS-BI-phosphohydrolase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7143	sediment sample collected from the Dabuxun salt lake in the Qaidam Basin	north-west China, Qinghai Province	China	CHN	Asia
23016

Taxonmaps

69479

Global distribution of 16S sequence EU135728 (>99% sequence identity) for Paraliobacillus quinghaiensis subclade from Microbeatlas

Aquatic Samples	34
Soil Samples	18
Animal Samples	39
Plant Samples	6
Total Samples	97

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7143	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464511v1 assembly for Paraliobacillus quinghaiensis CGMCC 1.6333	scaffold	GCA_014645115	470815.5	8065120349	470815	62.8
66792	ASM342602v1 assembly for Paraliobacillus quinghaiensis YIM-C158	contig	GCA_003426025	470815.3	2832713448	470815	62.24

Genome browser: GCA_014645115

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7143	Paraliobacillus quinghaiensis strain YIM C158 16S ribosomal RNA gene, partial sequence	EU135728	1522		470815

GC content

7143

GC-content (mol%)39.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paraliobacillus quinghaiensis CGMCC 1.6333
NCBI: GCA_014645115

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	86.10	no
125439	motility	BacteriaNetⓘ	yes	82.70	no
125439	gram_stain	BacteriaNetⓘ	variable	74.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paraliobacillus quinghaiensis CGMCC 1.6333
NCBI: GCA_014645115.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.05	yes
125438	anaerobic	anaerobicⓘ	no	82.19	no
125438	aerobic	aerobicⓘ	yes	56.03	yes
125438	spore-forming	spore-formingⓘ	yes	92.30	yes
125438	thermophilic	thermophileⓘ	no	91.26	yes
125438	flagellated	motile2+ⓘ	yes	87.09	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraliobacillus salinarum sp. nov., isolated from saline soil in Yingkou, China.	Yin YL, Li FL, Du XY, Zhang YX, Wang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004877	2021
Phylogeny	Paraliobacillus sediminis sp. nov., isolated from East China sea sediment.	Cao WR, Guo LY, Du ZJ, Das A, Saren G, Jiang MY, Dunlap CA, Rooney AP, Yu XK, Li TG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001767	2017
Phylogeny	Aquibacillus halophilus gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Virgibacillus koreensis as Aquibacillus koreensis comb. nov. and Virgibacillus albus as Aquibacillus albus comb. nov.	Amoozegar MA, Bagheri M, Didari M, Mehrshad M, Schumann P, Sproer C, Sanchez-Porro C, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.065375-0	2014
Phylogeny	Alkalilactibacillus ikkensis, gen. nov., sp. nov., a novel enzyme-producing bacterium from a cold and alkaline environment in Greenland.	Schmidt M, Prieme A, Johansen A, Stougaard P	Extremophiles	10.1007/s00792-012-0430-7	2012
Phylogeny	Paraliobacillus quinghaiensis sp. nov., isolated from salt-lake sediment in China.	Chen YG, Cui XL, Zhang YQ, Li WJ, Wang YX, Xu LH, Wen ML, Peng Q, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.65735-0	2009

References

#7143	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17857
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23016	Yi-Guang Chen,Xiao-Long Cui,Yu-Qin Zhang,Wen-Jun Li,Yong-Xia Wang,Li-Hua Xu,Meng-Liang Wen,Qian Peng,Cheng-Lin Jiang: Paraliobacillus quinghaiensis sp. nov., isolated from salt-lake sediment in China. IJSEM 59: 28 - 33 2009 ( DOI 10.1099/ijs.0.65735-0 , PubMed 19126718 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paraliobacillus quinghaiensis (DSM 17857, CGMCC 1.6333, YIM-C158)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014645115

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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