Name: Komagataeibacter nataicola CIP 109787
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 137389

Type strain:

Species: Komagataeibacter nataicola

Culture col. no.: CIP 109787, LMG 1536, JCM 25120, BCC 36443, NRIC 0616

Strain history: CIP <- 2008, T. Uchimura, Tokyo Univ., Tokyo, Japan: strain NRIC 0616

NCBI tax ID(s): 1307937 (strain), 265960 (species)

SI-ID 14558

LMG 1536, CIP 109787, BCC 36443, JCM 25120

Special Collections

Section

Komagataeibacter nataicola CIP 109787 is an obligate aerobe, Gram-negative bacterium of the family Acetobacteraceae.

Gram-negative
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Komagataeibacter*
	Species	**Komagataeibacter nataicola**
	Full Scientific Name (LPSN)	Komagataeibacter nataicola (Lisdiyanti et al. 2006) Yamada et al. 2013

	Synonym	"Komagatabacter* nataicola"*
	Synonym	Gluconacetobacter nataicola

Information on morphological and physiological properties Morphology

[Ref.: #37663]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98

[Ref.: #37663]	Cell shape	rod-shaped

[Ref.: #37663]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37663]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #37663]

Culture medium growth

[Ref.: #37663]

Culture medium composition

expand / minimize

[Ref.: #37663]

Culture medium

CIP Medium 1

[Ref.: #37663]

Culture medium growth

[Ref.: #37663]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #37663]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #37663]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.555

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #37663]		nitrate ChEBI	-	reduction
[Ref.: #37663]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #37663]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #37663]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #37663]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #37663]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #37663]	12110	-	-	+	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Nata de coco in the Philippines

[Ref.: #37663]	Sample type/isolated from	Coconut Nata
[Ref.: #37663]	Country	Philippines
[Ref.: #37663]	Country ISO 3 Code	PHL
[Ref.: #37663]	Continent	Asia

[Ref.: #37663]	Country	Philippines
[Ref.: #37663]	Country ISO 3 Code	PHL
[Ref.: #37663]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB166743 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	523
Soil Samples	662
Animal Samples	2327
Plant Samples	555
Total Samples	4067

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #37663]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconacetobacter nataicola gene for 16S rRNA, partial sequence, strain: LMG 1536	AB166743	1452	GenBank ENA	265960 tax ID
[Ref.: #67770]	Gluconacetobacter nataicola gene for 16S rRNA, partial sequence, strain: JCM 25120	AB645731	1413	GenBank ENA	265960 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Komagataeibacter nataicola LMG 1536	GCA_003207795	contig	GenBank ENA	265960 tax ID
[Ref.: #66792]	Komagataeibacter nataicola strain LMG 1536	265960.20	wgs	PATRIC	265960 tax ID	*
[Ref.: #66792]	Komagataeibacter nataicola LMG 1536	2846465737	draft	JGI IMG/M	265960 tax ID	*

[Ref.: #67770]

GC-content

62 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Komagataeibacter nataicola strain LMG 1536 PATRIC: 265960.20
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	86.992	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.555	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.043	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	76.014	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	59.094	no

Availability in culture collections External links

[Ref.: #37663]

Culture collection no.

CIP 109787, LMG 1536, JCM 25120, BCC 36443, NRIC 0616

[Ref.: #94298]

SI-ID 14558

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Gluconacetobacter hansenii strains and proposals of Gluconacetobacter saccharivorans sp. nov. and Gluconacetobacter nataicola sp. nov.	Lisdiyanti P, Navarro RR, Uchimura T, Komagata K	Int J Syst Evol Microbiol	10.1099/ijs.0.63252-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37663 Collection of Institut Pasteur ; Curators of the CIP; CIP 109787

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#94298

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14558.1 )

* These data were automatically processed and therefore are not curated

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Komagataeibacter nataicola strain LMG 1536

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