Strain identifier

BacDive ID: 137389

Type strain: Yes

Species: Komagataeibacter nataicola

Strain history: NRIC 0616 <-- LMG 1536 <-- E. Magno (Acetobacter xylinum).

NCBI tax ID(s): 265960 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 37663

BacDive-ID: 137389

keywords: 16S sequence, Bacteria, mesophilic, genome sequence

description: Komagataeibacter nataicola CIP 109787 is a mesophilic Proteobacterium of the family Acetobacteraceae.

NCBI tax id

  • NCBI tax id: 265960
  • Matching level: species

strain history

doi: 10.13145/bacdive137389.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Komagataeibacter
  • species: Komagataeibacter nataicola
  • full scientific name: Komagataeibacter nataicola (Lisdiyanti et al. 2006) Yamada et al. 2013
  • synonyms

    @refsynonym
    20215Gluconacetobacter nataicola
    20215Komagatabacter nataicola

@ref: 37663

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Komagataeibacter

species: Komagataeibacter nataicola

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 37663
  • name: MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)

culture temp

@refgrowthtypetemperaturerange
37663positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-10

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
37663PhilippinesPHLAsia
67770Nata de coco in the Philippines

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Gluconacetobacter nataicola gene for 16S rRNA, partial sequence, strain: LMG 1536AB1667431452ena265960
67770Gluconacetobacter nataicola gene for 16S rRNA, partial sequence, strain: JCM 25120AB6457311413ena265960

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Komagataeibacter nataicola LMG 1536GCA_003207795contigncbi265960
66792Komagataeibacter nataicola strain LMG 1536265960.20wgspatric265960
66792Komagataeibacter nataicola LMG 15362846465737draftimg265960
67770Komagataeibacter nataicola strain LMG 1536, whole genome shotgun sequencing projectNIRT00000000ncbi265960

GC content

  • @ref: 67770
  • GC-content: 62
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 37663

culture collection no.: CIP 109787, LMG 1536, JCM 25120, BCC 36443, NRIC 0616

straininfo link

@refpassport
20218http://www.straininfo.net/strains/840652
20218http://www.straininfo.net/strains/128
20218http://www.straininfo.net/strains/869139
20218http://www.straininfo.net/strains/862281

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
37663Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7568 Collection of Institut Pasteur (CIP 109787)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/