Name: Paracoccus kocurii B
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13712

Type strain:

Species: Paracoccus kocurii

Strain Designation: B

Culture col. no.: DSM 8536, ATCC 49631, CCM 4333, IAM 14243, JCM 7684, CIP 106074, IFO 16713, NBRC 16713, NCIMB 13628, VKM B-2139

Strain history: CIP <- 1999, JCM <- Y. Katayama: strain B

NCBI tax ID(s): 1122932 (strain), 34005 (species)

SI-ID 42591

ATCC 49631, JCM 7684, CIP 106074, CCM 4333, IAM 14243, DSM 8536, NCIMB 13628, VKM B-2139, IFO 16713, NBRC 16713, KCTC 12189

Special Collections

Other strains from Paracoccus kocurii

Section

Paracoccus kocurii B is a Gram-negative, rod-shaped bacterium that was isolated from activated sludge for the treatment of tetramethylammonium.

Gram-negative
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus kocurii**
	Full Scientific Name (LPSN)	Paracoccus kocurii Ohara et al. 1990

Information on morphological and physiological properties Morphology

[Ref.: #120456]	Gram stain	negative

[Ref.: #120456]	Cell shape	rod-shaped

[Ref.: #120456]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3237]

Culture medium

PARACOCCUS KOCURII MEDIUM (DSMZ Medium 773)

[Ref.: #3237]

Culture medium growth

[Ref.: #3237]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3237]

Culture medium composition

expand / minimize

[Ref.: #32935]

Culture medium

MEDIUM 312 - for Paracoccus kocurii

[Ref.: #32935]

Culture medium growth

[Ref.: #32935]

Culture medium composition

expand / minimize

[Ref.: #3237]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #3237]

Culture medium growth

[Ref.: #3237]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3237]

Culture medium composition

expand / minimize

[Ref.: #120456]

Culture medium

CIP Medium 312

[Ref.: #120456]

Culture medium growth

[Ref.: #120456]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3237]		growth	28 °C
[Ref.: #32935]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #120456]		growth	30-37 °C
[Ref.: #120456]	no	growth	5 °C
[Ref.: #120456]	no	growth	10 °C
[Ref.: #120456]	no	growth	25 °C
[Ref.: #120456]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

	Salt	Tested relation		Salt conc.
[Ref.: #120456]	NaCl		growth	0	%
[Ref.: #120456]	NaCl	no	growth	2	%
[Ref.: #120456]	NaCl	no	growth	4	%
[Ref.: #120456]	NaCl	no	growth	6	%
[Ref.: #120456]	NaCl	no	growth	8	%
[Ref.: #120456]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120456]	citrate ChEBI	-	carbon source
[Ref.: #120456]	esculin ChEBI	-	hydrolysis
[Ref.: #120456]	nitrate ChEBI	+	reduction
[Ref.: #120456]	nitrate ChEBI	+	respiration
[Ref.: #120456]	nitrite ChEBI	+	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120456]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #120456]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #120456]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120456]	amylase	-
[Ref.: #120456]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120456]	caseinase	-	3.4.21.50
[Ref.: #120456]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120456]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120456]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120456]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120456]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120456]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120456]	tryptophan deaminase	-
[Ref.: #120456]	tween esterase	-
[Ref.: #120456]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120456]	9230	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3237]	Sample type/isolated from	activated sludge for the treatment of tetramethylammonium

[Ref.: #67770]	Sample type/isolated from	Activated sludge for the treatment of tetramethylammonium

[Ref.: #120456]	Sample type/isolated from	Environment, Activated sludge
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Activated sludge

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681114 (>99% sequence identity) for Paracoccus kocurii subclade from Microbeatlas

Aquatic Samples	187
Soil Samples	34
Animal Samples	107
Plant Samples	15
Total Samples	343

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3237]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120456]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Paracoccus kocurii gene for 16S rRNA, strain: JCM 7684	D32241	1387	GenBank ENA	34005 tax ID	*
[Ref.: #20218]	Paracoccus kocurii gene for 16S rRNA, partial sequence, strain: NBRC 16713	AB681114	1390	GenBank ENA	34005 tax ID	*

[Ref.: #3237]

GC-content

71 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #3237]

Culture collection no.

DSM 8536, ATCC 49631, CCM 4333, IAM 14243, JCM 7684, CIP 106074, IFO 16713, NBRC 16713, NCIMB 13628, VKM B-2139

[Ref.: #82896]

SI-ID 42591

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus kocurii sp. nov., a tetramethylammonium-assimilating bacterium.	Ohara M, Katayama Y, Tsuzaki M, Nakamoto S, Kuraishi H	Int J Syst Bacteriol	10.1099/00207713-40-3-292	1990	*

References

#3237

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8536

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32935 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82896

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42591.1 )

#120456 Collection of Institut Pasteur ; Curators of the CIP; CIP 106074
* These data were automatically processed and therefore are not curated

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