Paracoccus alcaliphilus (DSM 8512, ATCC 51199, JCM 7364)

Name: Paracoccus alcaliphilus (DSM 8512, ATCC 51199, JCM 7364)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13711

Type strain

Strain Designation TK 1015

Culture col. no. DSM 8512 ATCC 51199 JCM 7364 NCIMB 13180 TK 1015 7 more

NCBI tax ID(s) 34002

Special Collections DSMZ JCM CIP

History <- JCM <- T. Urakami, TK 1015 T. Urakami TK 1015. CIP <- 1999, JCM <- T. Urakami: strain TK 1015

Links

Paracoccus alcaliphilus TK 1015 is an obligate aerobe, Gram-negative, oval-shaped bacterium that was isolated from soil.

Gram-negative oval-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 45274

ATCC 51199,NCIMB 13180,JCM 7364,CIP 106073,DSM 8512,VKM B-2138,IFO 16719,NBRC 16719,IAM 14749,LMG 24023,BCRC 80157

@ref 20215

Last LPSN update 2026-02-09 11:21:13

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Paracoccus

Species Paracoccus alcaliphilus

Full scientific name Paracoccus alcaliphilus Urakami et al. 1989

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116208	negative	oval-shaped
125438	negative		96.4
125439	negative		94.3

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3293	PARACOCCUS ALCALIPHILUS MEDIUM (DSMZ Medium 772)	Medium recipe at MediaDive	Name: PARACOCCUS ALCALIPHILUS MEDIUM (DSMZ Medium 772) Composition: Methanol 7.92 g/l (NH4)2SO4 3.0 g/l Na2HPO4 3.0 g/l KH2PO4 1.4 g/l MgSO4 x 7 H2O 0.2 g/l Fe(III) citrate 0.03 g/l CaCl2 x 2 H2O 0.03 g/l MnCl2 x 4 H2O 0.005 g/l ZnSO4 x 7 H2O 0.005 g/l CuSO4 x 2 H2O 0.0005 g/l Thiamine-HCl x 2 H2O 0.0004 g/l Distilled water
32934	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
116208	CIP Medium 3	Medium recipe at CIP
116208	CIP Medium 229	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3293	positive	growth	30
32934	positive	growth	30
67770	positive	growth	30
116208	positive	growth	25-30
116208	negative	growth	5
116208	negative	growth	10
116208	negative	growth	37
116208	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
116208	obligate aerobe
125439	aerobe	93.7

Spore formation

@ref	Spore formation	Confidence
125438		92.861
125439		96

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116208	NaCl	positive	growth	0-6 %
116208	NaCl		growth	8 %
116208	NaCl		growth	10 %

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
116208	16947 ChEBI	citrate	-	carbon source
116208	4853 ChEBI	esculin	-	hydrolysis
116208	17632 ChEBI	nitrate	+	reduction
116208	17632 ChEBI	nitrate	-	respiration
116208	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116208	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116208	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116208	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116208	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
116208	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116208	caseinase	-	3.4.21.50
116208	catalase	-	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
116208	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116208	gelatinase	-
116208	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116208	lipase	-
68382	lipase (C 14)	-		from API zym
116208	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116208	ornithine decarboxylase	-	4.1.1.17
116208	oxidase	+
116208	protease	-
68382	trypsin	-	3.4.21.4	from API zym
116208	tryptophan deaminase	-
116208	tween esterase	-
116208	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	butanoate fermentation	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	ketogluconate metabolism	100	8 of 8
66794	quinate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	octane oxidation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	enterobactin biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	Entner Doudoroff pathway	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	CMP-KDO biosynthesis	100	4 of 4
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	photosynthesis	92.86	13 of 14
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	proline metabolism	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	vitamin B12 metabolism	88.24	30 of 34
66794	citric acid cycle	85.71	12 of 14
66794	glutathione metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	purine metabolism	81.91	77 of 94
66794	vitamin B6 metabolism	81.82	9 of 11
66794	degradation of sugar acids	80	20 of 25
66794	pyrimidine metabolism	80	36 of 45
66794	peptidoglycan biosynthesis	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	d-mannose degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	alanine metabolism	75.86	22 of 29
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	pentose phosphate pathway	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	cysteine metabolism	72.22	13 of 18
66794	oxidative phosphorylation	71.43	65 of 91
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	degradation of pentoses	71.43	20 of 28
66794	tryptophan metabolism	71.05	27 of 38
66794	glycolysis	70.59	12 of 17
66794	urea cycle	69.23	9 of 13
66794	methionine metabolism	69.23	18 of 26
66794	degradation of sugar alcohols	68.75	11 of 16
66794	flavin biosynthesis	66.67	10 of 15
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	methane metabolism	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	heme metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	lipid metabolism	61.29	19 of 31
66794	myo-inositol biosynthesis	60	6 of 10
66794	creatinine degradation	60	3 of 5
66794	phenol degradation	60	12 of 20
66794	vitamin K metabolism	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	tyrosine metabolism	57.14	8 of 14
66794	nitrate assimilation	55.56	5 of 9
66794	lysine metabolism	54.76	23 of 42
66794	metabolism of disaccharids	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	resorcinol degradation	50	1 of 2
66794	polyamine pathway	47.83	11 of 23
66794	ascorbate metabolism	45.45	10 of 22
66794	hydrogen production	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	degradation of hexoses	33.33	6 of 18
66794	pantothenate biosynthesis	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	starch degradation	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116208	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116208	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	+	+	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
3293	soil
67770	Soil
116208	Environment, Soil

Taxonmaps

69479

Global distribution of 16S sequence D32238 (>99% sequence identity) for Paracoccus alcaliphilus from Microbeatlas

Aquatic Samples	254
Soil Samples	133
Animal Samples	406
Plant Samples	24
Total Samples	817

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3293	1	Risk group (German classification) According to TRBA 466
116208	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2855372v1 assembly for Paracoccus alcaliphilus TK 1015 = DSM 8512	complete	GCA_028553725	34002.14	8114117954	34002	96.2
67770	IMG-taxon 2636415977 annotated assembly for Paracoccus alcaliphilus DSM 8512	scaffold	GCA_900110285	34002.8	2636415977	34002	52.08

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Paracoccus alcaliphilus 16S ribosomal RNA gene, partial sequence	AY014177	1456	34002
20218	Paracoccus alcaliphilus gene for 16S rRNA, strain: JCM 7364	D32238	1385	34002
124043	Paracoccus alcaliphilus strain DSM 8512 16S ribosomal RNA gene, partial sequence.	PQ248481	601	34002

GC content

@ref	GC-content (mol%)	Method
3293	64.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paracoccus alcaliphilus TK 1015 = DSM 8512
NCBI: GCA_028553725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.00	no
125439	motility	BacteriaNetⓘ	yes	59.50	no
125439	gram_stain	BacteriaNetⓘ	negative	94.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	93.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paracoccus alcaliphilus TK 1015 = DSM 8512
NCBI: GCA_028553725.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.40	no
125438	anaerobic	anaerobicⓘ	no	92.75	yes
125438	aerobic	aerobicⓘ	yes	85.43	yes
125438	spore-forming	spore-formingⓘ	no	92.86	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	no	58.13	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Identification of structurally diverse menaquinone-binding antibiotics with in vivo activity against multidrug-resistant pathogens.	Li L, Li L, Koirala B, Hernandez Y, MacIntyre LW, Ternei MA, Russo R, Brady SF.	Nat Microbiol	10.1038/s41564-021-01013-8	2022
Metabolism	Influence of inorganic nitrogen management regime on the diversity of nitrite-oxidizing bacteria in agricultural grassland soils.	Freitag TE, Chang L, Clegg CD, Prosser JI.	Appl Environ Microbiol	10.1128/aem.71.12.8323-8334.2005	2005
Genetics	Structure and functions of a multireplicon genome of Antarctic Psychrobacter sp. ANT_H3: characterization of the genetic modules suitable for the construction of the plasmid-vectors for cold-active bacteria.	Decewicz P, Romaniuk K, Gorecki A, Radlinska M, Dabrowska M, Wyszynska A, Dziewit L.	J Appl Genet	10.1007/s13353-023-00759-7	2023
	Oxalotrophic Paracoccus alcaliphilus isolated from Amorphophallus sp. rhizoplane	Anbazhagan K, Edward Raja C, Selvam GS.	World J Microbiol Biotechnol	10.1007/s11274-007-9397-4	2007
Genetics	Identification and Characterization of the First Virulent Phages, Including a Novel Jumbo Virus, Infecting Ochrobactrum spp.	Decewicz P, Golec P, Szymczak M, Radlinska M, Dziewit L.	Int J Mol Sci	10.3390/ijms21062096	2020
	Identification and distribution of insertion sequences of Paracoccus solventivorans.	Bartosik D, Szymanik M, Baj J.	Appl Environ Microbiol	10.1128/aem.69.12.7002-7008.2003	2003
Metabolism	Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria) - structure, diversity and evolution.	Maj A, Dziewit L, Czarnecki J, Wlodarczyk M, Baj J, Skrzypczyk G, Giersz D, Bartosik D.	PLoS One	10.1371/journal.pone.0080258	2013
	The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2.	Dziewit L, Jazurek M, Drewniak L, Baj J, Bartosik D.	J Bacteriol	10.1128/jb.01610-06	2007
	A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.	Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish JP, Lynch SV.	OMICS	10.1089/omi.2009.0100	2010
Genetics	Characterization of the replicator region of megaplasmid pTAV3 of Paracoccus versutus and search for plasmid-encoded traits.	Bartosik D, Baj J, Bartosik AA, Wlodarczyk M	Microbiology (Reading)	10.1099/00221287-148-3-871	2002
Genetics	Characterization and sequence analysis of the replicator region of the novel plasmid pALC1 from Paracoccus alcaliphilus.	Bartosik D, Witkowska M, Baj J, Wlodarczyk M	Plasmid	10.1006/plas.2000.1505	2001
Phylogeny	Paracoccus yeeii sp. nov. (formerly CDC group EO-2), a novel bacterial species associated with human infection.	Daneshvar MI, Hollis DG, Weyant RS, Steigerwalt AG, Whitney AM, Douglas MP, Macgregor JP, Jordan JG, Mayer LW, Rassouli SM, Barchet W, Munro C, Shuttleworth L, Bernard K.	J Clin Microbiol	10.1128/jcm.41.3.1289-1294.2003	2003
Phylogeny	Paracoccus siganidrum sp. nov., isolated from fish gastrointestinal tract.	Liu Y, Xie QY, Hong K, Li L, Zhao YM, Tang YL, An JY, Zhu PP, Xu CH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9894-4	2013
Phylogeny	Paracoccus oceanense sp. nov., isolated from the West Pacific.	Fu Y, Li Q, Liu K, Xu Y, Wang Y, Jiao N	Curr Microbiol	10.1007/s00284-011-0015-1	2011
Phylogeny	Paracoccus stylophorae sp. nov., isolated from the reef-building coral Stylophora pistillata.	Sheu SY, Jiang SR, Chen CA, Wang JT, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.028035-0	2010
Phylogeny	Paracoccus caeni sp. nov., isolated from sludge.	Lee M, Woo SG, Park G, Kim MK	Int J Syst Evol Microbiol	10.1099/ijs.0.017897-0	2010

References

#3293	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8512
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32934	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116208	Collection of Institut Pasteur ; Curators of the CIP; CIP 106073
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paracoccus alcaliphilus (DSM 8512, ATCC 51199, JCM 7364)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Pathway annotation

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_028553725

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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