Kaistia dalseonensis (DSM 18800, KCTC 12850, B6-8)

Name: Kaistia dalseonensis (DSM 18800, KCTC 12850, B6-8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13567

Type strain

Strain Designation B6-8

Culture col. no. DSM 18800 KCTC 12850 B6-8

NCBI tax ID(s) 410840

Special Collections DSMZ KCTC

History <- K. K. Kim, KAIST; B6-8 <- L. Jin

Links

Kaistia dalseonensis B6-8 is a bacterium that was isolated from river sediment.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 396816

KCTC 12850,DSM 18800

@ref 20215

Last LPSN update 2026-02-09 11:21:11

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Kaistiaceae

Genus Kaistia

Species Kaistia dalseonensis

Full scientific name Kaistia dalseonensis Jin et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7705	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7705	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.5

Spore formation

@ref	Spore formation	Confidence
125439		95.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7705	river sediment	Dalseo Stream	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AM409364 (>99% sequence identity) for Kaistia dalseonensis subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	39
Animal Samples	12
Plant Samples	14
Total Samples	123

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7705	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM3081471v1 assembly for Kaistia dalseonensis B6-8	contig	GCA_030814715	410840.4	2928190133	410840	65.91
66792	ASM2634399v1 assembly for Kaistia dalseonensis DSM 18800	contig	GCA_026343995	410840.3	8049200660	410840	65.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7705	Kaistia dalseonensis partial 16S rRNA gene, strain B6-8	AM409364	1449		410840

GC content

@ref	GC-content (mol%)	Method
7705	66.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kaistia dalseonensis DSM 18800
NCBI: GCA_026343995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.90	no
125439	motility	BacteriaNetⓘ	yes	53.00	no
125439	gram_stain	BacteriaNetⓘ	negative	97.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoxanthobacter liyangensis sp. nov., isolated from dichlorodiphenyltrichloroethane-contaminated soil.	Liu XM, Chen K, Meng C, Zhang L, Zhu JC, Huang X, Li SP, Jiang JD	Int J Syst Evol Microbiol	10.1099/ijs.0.056507-0	2014
Phylogeny	Kaistia defluvii sp. nov., isolated from river sediment.	Jin L, Kim KK, Lee HG, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.038687-0	2012
Phylogeny	Kaistia geumhonensis sp. nov. and Kaistia dalseonensis sp. nov., two members of the class Alphaproteobacteria.	Jin L, Kim KK, Baek SH, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.028894-0	2010

References

#7705	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18800
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kaistia dalseonensis (DSM 18800, KCTC 12850, B6-8)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030814715

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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