Strain identifier

BacDive ID: 13567

Type strain: Yes

Species: Kaistia dalseonensis

Strain Designation: B6-8

Strain history: <- K. K. Kim, KAIST; B6-8 <- L. Jin

NCBI tax ID(s): 410840 (species)

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General

@ref: 7705

BacDive-ID: 13567

DSM-Number: 18800

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Kaistia dalseonensis B6-8 is a mesophilic bacterium that was isolated from river sediment.

NCBI tax id

  • NCBI tax id: 410840
  • Matching level: species

strain history

  • @ref: 7705
  • history: <- K. K. Kim, KAIST; B6-8 <- L. Jin

doi: 10.13145/bacdive13567.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Kaistiaceae
  • genus: Kaistia
  • species: Kaistia dalseonensis
  • full scientific name: Kaistia dalseonensis Jin et al. 2011

@ref: 7705

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Kaistiaceae

genus: Kaistia

species: Kaistia dalseonensis

full scientific name: Kaistia dalseonensis Jin et al. 2011

strain designation: B6-8

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 7705
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 7705
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 7705
  • sample type: river sediment
  • geographic location: Dalseo Stream
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#River (Creek)
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_70697.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_3060;97_38206;98_49598;99_70697&stattab=map
  • Last taxonomy: Kaistia dalseonensis subclade
  • 16S sequence: AM409364
  • Sequence Identity:
  • Total samples: 123
  • soil counts: 39
  • aquatic counts: 58
  • animal counts: 12
  • plant counts: 14

Safety information

risk assessment

  • @ref: 7705
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7705
  • description: Kaistia dalseonensis partial 16S rRNA gene, strain B6-8
  • accession: AM409364
  • length: 1449
  • database: ena
  • NCBI tax ID: 410840

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kaistia dalseonensis DSM 188002928190133draftimg410840
66792Kaistia dalseonensis DSM 18800GCA_026343995contigncbi410840

GC content

  • @ref: 7705
  • GC-content: 66.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 7705

culture collection no.: DSM 18800, KCTC 12850

straininfo link

  • @ref: 82755
  • straininfo: 396816

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21131499Kaistia geumhonensis sp. nov. and Kaistia dalseonensis sp. nov., two members of the class Alphaproteobacteria.Jin L, Kim KK, Baek SH, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.028894-02010Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobiaceae/*classification/genetics/*isolation & purification/metabolism, Rivers/*microbiologyMetabolism
Phylogeny22247212Kaistia defluvii sp. nov., isolated from river sediment.Jin L, Kim KK, Lee HG, Ahn CY, Oh HMInt J Syst Evol Microbiol10.1099/ijs.0.038687-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhizobiaceae/*classification/genetics/isolation & purification, Rivers/*microbiology, Sequence Analysis, DNA, Sewage/microbiology, Ubiquinone/analogs & derivatives/analysisGenetics
Phylogeny25013230Pseudoxanthobacter liyangensis sp. nov., isolated from dichlorodiphenyltrichloroethane-contaminated soil.Liu XM, Chen K, Meng C, Zhang L, Zhu JC, Huang X, Li SP, Jiang JDInt J Syst Evol Microbiol10.1099/ijs.0.056507-02014Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DDT/*chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/chemistry, Ubiquinone/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitle
7705Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18800)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18800
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82755Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID396816.1StrainInfo: A central database for resolving microbial strain identifiers