Name: Kaistia geumhonensis B1-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13568

Type strain:

Species: Kaistia geumhonensis

Strain Designation: B1-1

Culture col. no.: DSM 18799, KCTC 12849

Strain history: <- K. K. Kim, KAIST; B1-1 <- L. Jin

NCBI tax ID(s): 410839 (species)

SI-ID 397710

DSM 18799

Special Collections

DSMZ
KCTC

Section

Kaistia geumhonensis B1-1 is a bacterium that was isolated from river sediment.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Kaistiaceae*
	Genus	*Kaistia*
	Species	**Kaistia geumhonensis**
	Full Scientific Name (LPSN)	Kaistia geumhonensis Jin et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7704]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7704]

Culture medium growth

[Ref.: #7704]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7704]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7704]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7704]	Sample type/isolated from	river sediment
[Ref.: #7704]	Geographic location (country and/or sea, region)	Geumho River
[Ref.: #7704]	Country	Republic of Korea
[Ref.: #7704]	Country ISO 3 Code	KOR
[Ref.: #7704]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM409363 (>99% sequence identity) for Kaistia geumhonensis from Microbeatlas

Aquatic Samples	374
Soil Samples	237
Animal Samples	92
Plant Samples	39
Total Samples	742

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7704]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7704]	Kaistia geumhonensis partial 16S rRNA gene, strain B1-1	AM409363	1449	GenBank ENA	410839 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kaistia geumhonensis DSM 18799	2928557508	draft	JGI IMG/M	410839 tax ID	*
[Ref.: #66792]	Kaistia geumhonensis DSM 18799	GCA_026344055	contig	GenBank ENA	410839 tax ID	*

[Ref.: #7704]

GC-content

61.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7704]

Culture collection no.

DSM 18799, KCTC 12849

[Ref.: #82756]

SI-ID 397710

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kaistia algarum sp. nov., isolated from a freshwater green alga Paulinella chromatophora.	Lee Y, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002943	2018	*
Phylogeny	Kaistia defluvii sp. nov., isolated from river sediment.	Jin L, Kim KK, Lee HG, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.038687-0	2012	*
Phylogeny	Kaistia geumhonensis sp. nov. and Kaistia dalseonensis sp. nov., two members of the class Alphaproteobacteria.	Jin L, Kim KK, Baek SH, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.028894-0	2010	*

References

#7704

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18799

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#82756

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397710.1 )

* These data were automatically processed and therefore are not curated

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