Kaistia geumhonensis (DSM 18799, KCTC 12849, B1-1)

Name: Kaistia geumhonensis (DSM 18799, KCTC 12849, B1-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13568

Type strain

Strain Designation B1-1

Culture col. no. DSM 18799 KCTC 12849 B1-1

NCBI tax ID(s) 410839

Special Collections DSMZ KCTC

History DSMZ <- K. K. Kim, KAIST; B1-1 <- L. Jin

Links

Kaistia geumhonensis B1-1 is a bacterium that was isolated from river sediment.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397710

KCTC 12849,DSM 18799

@ref 20215

Last LPSN update 2026-05-29 08:28:04

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Kaistiaceae

Genus Kaistia

Species Kaistia geumhonensis

Full scientific name Kaistia geumhonensis Jin et al. 2011

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7704	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7704	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.48

Spore formation

@ref	Spore formation	Confidence
125439		97.842

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7704	river sediment	Geumho River	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AM409363 (>99% sequence identity) for Kaistia geumhonensis from Microbeatlas

Aquatic Samples	374
Soil Samples	237
Animal Samples	92
Plant Samples	39
Total Samples	742

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7704	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM3081514v1 assembly for Kaistia geumhonensis B1-1	contig	GCA_030815145	410839.4	2928557508	410839	67.52
66792	ASM2634405v1 assembly for Kaistia geumhonensis DSM 18799	contig	GCA_026344055	410839.3	8049205634	410839	66.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7704	Kaistia geumhonensis partial 16S rRNA gene, strain B1-1	AM409363	1449		410839

GC content

@ref	GC-content (mol%)	Method
7704	61.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3081514v1 assembly for Kaistia geumhonensis B1-1
NCBI: GCA_030815145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	71.25	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.48	no
125439	motility	BacteriaNetⓘ	yes	48.19	no
125439	spore_formation	BacteriaNetⓘ	no	97.84	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kaistia algarum sp. nov., isolated from a freshwater green alga Paulinella chromatophora.	Lee Y, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002943	2018
Phylogeny	Kaistia defluvii sp. nov., isolated from river sediment.	Jin L, Kim KK, Lee HG, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.038687-0	2012
Phylogeny	Kaistia geumhonensis sp. nov. and Kaistia dalseonensis sp. nov., two members of the class Alphaproteobacteria.	Jin L, Kim KK, Baek SH, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.028894-0	2010

References

#7704	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18799
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kaistia geumhonensis (DSM 18799, KCTC 12849, B1-1)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030815145

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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