Name: Saccharopolyspora antimicrobica 05-74
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13467

Type strain:

Species: Saccharopolyspora antimicrobica

Strain Designation: 05-74, I05-00074

Culture col. no.: DSM 45119, CCM 7463, KCTC 19303, JCM 16610, CPCC 201024

Strain history: <- YQ Zhang, Inst. Med. Biotechnol, China

NCBI tax ID(s): 455193 (species)

SI-ID 396626

DSM 45119

Section

Saccharopolyspora antimicrobica 05-74 is an aerobe, spore-forming, mesophilic bacterium that was isolated from forest soil.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora antimicrobica**
	Full Scientific Name (LPSN)	Saccharopolyspora antimicrobica Yuan et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32466]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #32466]	Motility	no

[Ref.: #20166]	Colony color	Beige (1001)
[Ref.: #20166]	Incubation period	10-14 days
[Ref.: #20166]	Cultivation medium used	ISP 2

[Ref.: #20166]	Colony color	Beige (1001)
[Ref.: #20166]	Incubation period	10-14 days
[Ref.: #20166]	Cultivation medium used	ISP 3

[Ref.: #20166]	Colony color	Beige (1001)
[Ref.: #20166]	Incubation period	10-14 days
[Ref.: #20166]	Cultivation medium used	ISP 4

[Ref.: #20166]	Colony color	Ochre brown (8001)
[Ref.: #20166]	Incubation period	10-14 days
[Ref.: #20166]	Cultivation medium used	ISP 5

[Ref.: #20166]	Colony color	Ochre brown (8001)
[Ref.: #20166]	Incubation period	10-14 days
[Ref.: #20166]	Cultivation medium used	ISP 6

[Ref.: #20166]	Colony color	Beige (1001)
[Ref.: #20166]	Incubation period	10-14 days
[Ref.: #20166]	Cultivation medium used	ISP 7

[Ref.: #32466]

Pigment production

yes

[Ref.: #20166]	Multicellular complex forming ability	no
[Ref.: #20166]	Medium Name (multicellularity)	ISP 2

[Ref.: #20166]	Multicellular complex forming ability	no
[Ref.: #20166]	Medium Name (multicellularity)	ISP 3

[Ref.: #20166]	Multicellular complex forming ability	no
[Ref.: #20166]	Medium Name (multicellularity)	ISP 4

[Ref.: #20166]	Multicellular complex forming ability	no
[Ref.: #20166]	Medium Name (multicellularity)	ISP 5

[Ref.: #20166]	Multicellular complex forming ability	no
[Ref.: #20166]	Medium Name (multicellularity)	ISP 6

[Ref.: #20166]	Multicellular complex forming ability	no
[Ref.: #20166]	Medium Name (multicellularity)	IPS 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12358]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12358]

Culture medium growth

[Ref.: #12358]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12358]

Culture medium composition

expand / minimize

[Ref.: #12358]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #12358]

Culture medium growth

[Ref.: #12358]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12358]

Culture medium composition

expand / minimize

[Ref.: #20166]

Culture medium

ISP 2

[Ref.: #20166]

Culture medium growth

[Ref.: #20166]

Culture medium composition

expand / minimize

[Ref.: #20166]

Culture medium

ISP 3

[Ref.: #20166]

Culture medium growth

[Ref.: #20166]

Culture medium composition

expand / minimize

[Ref.: #20166]

Culture medium

ISP 4

[Ref.: #20166]

Culture medium growth

[Ref.: #20166]

Culture medium composition

expand / minimize

[Ref.: #20166]

Culture medium

ISP 5

[Ref.: #20166]

Culture medium growth

[Ref.: #20166]

Culture medium composition

expand / minimize

[Ref.: #20166]

Culture medium

ISP 6

[Ref.: #20166]

Culture medium growth

[Ref.: #20166]

Culture medium composition

expand / minimize

[Ref.: #20166]

Culture medium

ISP 7

[Ref.: #20166]

Culture medium growth

[Ref.: #20166]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12358]	growth	28 °C
[Ref.: #20166]	optimum	28 °C
[Ref.: #32466]	growth	20-45 °C
[Ref.: #32466]	optimum	32.5 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28-37 °C

[Ref.: #12358]	Temperature range	mesophilic
[Ref.: #20166]	Temperature range	mesophilic
[Ref.: #32466]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32466]			optimum	7.25
[Ref.: #32466]			growth	6-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32466]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32466]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32466]		NaCl		growth	0-7	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32466]	acetate ChEBI	+	carbon source
[Ref.: #32466]	arabinose ChEBI	+	carbon source
[Ref.: #32466]	cellobiose ChEBI	+	carbon source
[Ref.: #32466]	citrate ChEBI	+	carbon source
[Ref.: #32466]	esculin ChEBI	+	hydrolysis
[Ref.: #32466]	fructose ChEBI	+	carbon source
[Ref.: #32466]	galactose ChEBI	+	carbon source
[Ref.: #32466]	glucosamine ChEBI	+	carbon source
[Ref.: #32466]	glucose ChEBI	+	carbon source
[Ref.: #32466]	lactose ChEBI	+	carbon source
[Ref.: #32466]	malonate ChEBI	+	carbon source
[Ref.: #32466]	maltose ChEBI	+	carbon source
[Ref.: #32466]	mannitol ChEBI	+	carbon source
[Ref.: #32466]	mannose ChEBI	+	carbon source
[Ref.: #32466]	melibiose ChEBI	+	carbon source
[Ref.: #32466]	nitrate ChEBI	+	reduction
[Ref.: #32466]	phenylalanine ChEBI	+	carbon source
[Ref.: #32466]	raffinose ChEBI	+	carbon source
[Ref.: #32466]	rhamnose ChEBI	+	carbon source
[Ref.: #32466]	ribitol ChEBI	+	carbon source
[Ref.: #32466]	ribose ChEBI	+	carbon source
[Ref.: #32466]	salicin ChEBI	+	carbon source
[Ref.: #32466]	sorbitol ChEBI	+	carbon source
[Ref.: #32466]	sucrose ChEBI	+	carbon source
[Ref.: #32466]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32466]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #32466]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #32466]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #32466]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #32466]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20166]	947	not determinedn.d.	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	+	+	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	100	9 of 9
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	3-chlorocatechol degradation	100	5 of 5
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	propanol degradation	100	7 of 7
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	flavin biosynthesis	93.33	14 of 15
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	glutamate and glutamine metabolism	89.29	25 of 28
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	vitamin B12 metabolism	88.24	30 of 34
[Ref.: #66794]	dTDPLrhamnose biosynthesis	87.5	7 of 8
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	tryptophan metabolism	86.84	33 of 38
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	purine metabolism	86.17	81 of 94
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	85.71	6 of 7
[Ref.: #66794]	methionine metabolism	84.62	22 of 26
[Ref.: #66794]	pyrimidine metabolism	84.44	38 of 45
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	histidine metabolism	82.76	24 of 29
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	phenol degradation	80	16 of 20
[Ref.: #66794]	4-hydroxyphenylacetate degradation	80	8 of 10
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	lipid metabolism	77.42	24 of 31
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	non-pathway related	76.32	29 of 38
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	arginine metabolism	75	18 of 24
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	3-phenylpropionate degradation	73.33	11 of 15
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	oxidative phosphorylation	71.43	65 of 91
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	70.59	12 of 17
[Ref.: #66794]	polyamine pathway	69.57	16 of 23
[Ref.: #66794]	androgen and estrogen metabolism	68.75	11 of 16
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	carotenoid biosynthesis	68.18	15 of 22
[Ref.: #66794]	degradation of sugar acids	68	17 of 25
[Ref.: #66794]	degradation of pentoses	67.86	19 of 28
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	lysine metabolism	66.67	28 of 42
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	daunorubicin biosynthesis	55.56	5 of 9
[Ref.: #66794]	cholesterol biosynthesis	54.55	6 of 11
[Ref.: #66794]	ascorbate metabolism	54.55	12 of 22
[Ref.: #66794]	phenylpropanoid biosynthesis	53.85	7 of 13
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	chlorophyll metabolism	33.33	6 of 18
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12358]	Sample type/isolated from	forest soil
[Ref.: #12358]	Geographic location (country and/or sea, region)	Temple of Heaven, Beijing
[Ref.: #12358]	Country	China
[Ref.: #12358]	Country ISO 3 Code	CHN
[Ref.: #12358]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from the Temple of Heaven
[Ref.: #67770]	Geographic location (country and/or sea, region)	Beijing
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From forest soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Hebei Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12358]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20166]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12358]	Saccharopolyspora antimicrobica strain I05-00074 16S ribosomal RNA gene, partial sequence	EF693956	1449	ENA	455193 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Saccharopolyspora antimicrobica DSM 45119	GCA_003635025	contig	GenBank	455193 tax ID
[Ref.: #66792]	Saccharopolyspora antimicrobica strain DSM 45119	455193.5	wgs	PATRIC	455193 tax ID	*
[Ref.: #66792]	Saccharopolyspora antimicrobica DSM 45119	2627854288	draft	JGI IMG/M	455193 tax ID	*

[Ref.: #12358]	GC-content	69.3 mol%
[Ref.: #67770]	GC-content	70.4 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	69.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharopolyspora antimicrobica strain DSM 45119 PATRIC: 455193.5
[Ref.: #69480]	gram-positive	yes	89.04	yes
[Ref.: #69480]	anaerobic	no	98.693	yes
[Ref.: #69480]	halophile	yes	54.684	no
[Ref.: #69480]	spore-forming	yes	92.416	yes
[Ref.: #69480]	glucose-util	yes	87.476	no
[Ref.: #69480]	aerobic	yes	89.682	yes
[Ref.: #69480]	flagellated	no	97.376	yes
[Ref.: #69480]	thermophile	no	97.772	yes
[Ref.: #69480]	motile	no	92.269	yes
[Ref.: #69480]	glucose-ferment	no	91.208	no

Availability in culture collections External links

[Ref.: #12358]

Culture collection no.

DSM 45119, CCM 7463, KCTC 19303, JCM 16610, CPCC 201024

[Ref.: #82659]

SI-ID 396626

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora maritima sp. nov., an actinomycete isolated from mangrove sediment.	Suksaard P, Srisuk N, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002941	2018	*
Phylogeny	Saccharopolyspora indica sp. nov., an actinomycete isolated from the rhizosphere of Callistemon citrinus (Curtis).	Vaddavalli R, Peddi S, Kothagauni SY, Begum Z, Gaddam B, Periketi M, Linga VR	Int J Syst Evol Microbiol	10.1099/ijs.0.057539-0	2014	*
Phylogeny	Saccharopolyspora antimicrobica sp. nov., an actinomycete from soil.	Yuan LJ, Zhang YQ, Guan Y, Wei YZ, Li QP, Yu LY, Li WJ, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijs.0.65532-0	2008	*

References

#12358

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45119

#20166

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32466

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28687 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82659

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396626.1 )

#28687

IJSEM 1180 2008 ( DOI 10.1099/ijs.0.65532-0 , PubMed 18450710 )

* These data were automatically processed and therefore are not curated

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Saccharopolyspora antimicrobica strain DSM 45119

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