Name: Nocardioides fonticola NAA-13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 134367

Type strain:

Species: Nocardioides fonticola

Strain Designation: NAA-13

Culture col. no.: LMG 24213, BCRC 16874, JCM 16703

Strain history: BCRC 16874 <-- W.-M. Chen NAA-13.

NCBI tax ID(s): 450363 (species)

SI-ID 308902

LMG 24213, BCRC 16874, JCM 16703

Section

Nocardioides fonticola NAA-13 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from freshwater .

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides fonticola**
	Full Scientific Name (LPSN)	Nocardioides fonticola Chou et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32628]	Gram stain	positive

[Ref.: #32628]	Cell length	02-09 µm

[Ref.: #32628]	Cell width	0.8 µm

[Ref.: #32628]	Cell shape	rod-shaped

[Ref.: #32628]	Motility	no

[Ref.: #32628]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32628]	growth	25-37 °C
[Ref.: #32628]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #32628]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32628]			optimum	07-08
[Ref.: #32628]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32628]

Oxygen tolerance

aerobe

[Ref.: #32628]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32628]		NaCl		growth	0.5-1	%
[Ref.: #32628]		NaCl		optimum	0.5	%

[Ref.: #32628]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32628]	esculin ChEBI	+	hydrolysis
[Ref.: #32628]	glucose ChEBI	+	carbon source
[Ref.: #32628]	mannitol ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32628]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #32628]	Sample type/isolated from	freshwater (river, lake, pond)

[Ref.: #67770]	Sample type/isolated from	Spring water
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kaoshiung County
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #32628]	Nocardioides fonticola strain NAA-13 16S ribosomal RNA gene, partial sequence	EF626689	1403	GenBank	450363 tax ID

[Ref.: #32628]

GC-content

71.8 mol%

Availability in culture collections External links

[Ref.: #32628]

Culture collection no.

LMG 24213, BCRC 16874, JCM 16703

[Ref.: #91913]

SI-ID 308902

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides ginsengagri sp. nov., isolated from the soil of a ginseng field.	Lee SH, Liu QM, Lee ST, Kim SC, Im WT	Int J Syst Evol Microbiol	10.1099/ijs.0.031823-0	2011	*
Phylogeny	Nocardioides fonticola sp. nov., a novel actinomycete isolated from spring water.	Chou JH, Cho NT, Arun AB, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65810-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32628

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28839 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#91913

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID308902.1 )

#28839

IJSEM 1864 2008 ( DOI 10.1099/ijs.0.65810-0 , PubMed 18676470 )

* These data were automatically processed and therefore are not curated

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