Strain identifier
BacDive ID: 134367
Type strain: 
Species: Nocardioides fonticola
Strain Designation: NAA-13
Strain history: BCRC 16874 <-- W.-M. Chen NAA-13.
NCBI tax ID(s): 450363 (species)
version 8.1 (current version)
General
@ref: 32628
BacDive-ID: 134367
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped
description: Nocardioides fonticola NAA-13 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from freshwater .
NCBI tax id
- NCBI tax id: 450363
- Matching level: species
strain history
- @ref: 67770
- history: BCRC 16874 <-- W.-M. Chen NAA-13.
doi: 10.13145/bacdive134367.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides fonticola
- full scientific name: Nocardioides fonticola Chou et al. 2008
@ref: 32628
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides fonticola
strain designation: NAA-13
type strain: yes
Morphology
cell morphology
- @ref: 32628
- gram stain: positive
- cell length: 02-09 µm
- cell width: 0.8 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 32628
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32628 | positive | growth | 25-37 | mesophilic |
| 32628 | positive | optimum | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32628 | positive | growth | 05-09 | alkaliphile |
| 32628 | positive | optimum | 07-08 |
Physiology and metabolism
oxygen tolerance
- @ref: 32628
- oxygen tolerance: aerobe
spore formation
- @ref: 32628
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32628 | NaCl | positive | growth | 0.5-1 % |
| 32628 | NaCl | positive | optimum | 0.5 % |
observation
| @ref | observation |
|---|---|
| 32628 | aggregates in chains |
| 67770 | quinones: MK-8(H4) |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32628 | 17234 | glucose | + | carbon source |
| 32628 | 29864 | mannitol | + | carbon source |
| 32628 | 4853 | esculin | + | hydrolysis |
enzymes
- @ref: 32628
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 32628 | freshwater (river, lake, pond) | ||||
| 67770 | Spring water | Kaoshiung County | Taiwan | TWN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Pond (small) |
| #Environmental | #Aquatic | #River (Creek) |
Sequence information
16S sequences
- @ref: 32628
- description: Nocardioides fonticola strain NAA-13 16S ribosomal RNA gene, partial sequence
- accession: EF626689
- length: 1403
- database: nuccore
- NCBI tax ID: 450363
GC content
- @ref: 32628
- GC-content: 71.8
External links
@ref: 32628
culture collection no.: LMG 24213, BCRC 16874, JCM 16703
straininfo link
- @ref: 91913
- straininfo: 308902
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18676470 | Nocardioides fonticola sp. nov., a novel actinomycete isolated from spring water. | Chou JH, Cho NT, Arun AB, Young CC, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.65810-0 | 2008 | Actinomycetales/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Taiwan | Genetics |
| Phylogeny | 21515700 | Nocardioides ginsengagri sp. nov., isolated from the soil of a ginseng field. | Lee SH, Liu QM, Lee ST, Kim SC, Im WT | Int J Syst Evol Microbiol | 10.1099/ijs.0.031823-0 | 2011 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Panax/growth & development, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysis | Genetics |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 32628 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28839 | 28776041 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 91913 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID308902.1 |